View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0669_low_89 (Length: 258)

Name: NF0669_low_89
Description: NF0669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0669_low_89
NF0669_low_89
[»] scaffold0091 (3 HSPs)
scaffold0091 (181-258)||(29057-29134)
scaffold0091 (43-118)||(28917-28994)
scaffold0091 (43-105)||(24720-24782)
[»] chr6 (4 HSPs)
chr6 (181-258)||(14989413-14989490)
chr6 (183-258)||(14980301-14980376)
chr6 (43-105)||(14980460-14980522)
chr6 (181-218)||(10906902-10906939)
[»] chr1 (5 HSPs)
chr1 (181-258)||(13882274-13882351)
chr1 (181-258)||(51658700-51658777)
chr1 (43-105)||(13882464-13882526)
chr1 (46-104)||(51658854-51658912)
chr1 (196-249)||(1567113-1567166)
[»] scaffold0218 (2 HSPs)
scaffold0218 (182-258)||(14378-14454)
scaffold0218 (43-113)||(14237-14307)
[»] scaffold0003 (2 HSPs)
scaffold0003 (181-256)||(130795-130870)
scaffold0003 (43-105)||(130633-130695)
[»] chr3 (10 HSPs)
chr3 (184-258)||(16642300-16642374)
chr3 (183-258)||(4712838-4712913)
chr3 (181-258)||(14055075-14055152)
chr3 (181-258)||(14062816-14062893)
chr3 (43-105)||(16642133-16642195)
chr3 (43-105)||(4712997-4713059)
chr3 (185-249)||(13926896-13926960)
chr3 (43-105)||(14055222-14055284)
chr3 (43-105)||(14062983-14063045)
chr3 (46-84)||(14481800-14481838)
[»] chr7 (11 HSPs)
chr7 (181-258)||(16060512-16060589)
chr7 (181-258)||(48376787-48376864)
chr7 (43-118)||(16060374-16060449)
chr7 (43-105)||(9080206-9080268)
chr7 (43-100)||(16069010-16069067)
chr7 (181-249)||(4531797-4531865)
chr7 (43-98)||(48376637-48376692)
chr7 (181-218)||(9080338-9080375)
chr7 (196-242)||(37945878-37945924)
chr7 (59-100)||(41744134-41744175)
chr7 (181-213)||(37946032-37946064)
[»] scaffold0063 (2 HSPs)
scaffold0063 (43-118)||(28443-28518)
scaffold0063 (181-219)||(28342-28380)
[»] chr8 (5 HSPs)
chr8 (181-244)||(23657751-23657814)
chr8 (181-258)||(23658526-23658611)
chr8 (43-102)||(23657648-23657707)
chr8 (43-102)||(23658423-23658482)
chr8 (43-100)||(17862246-17862303)
[»] scaffold1269 (1 HSPs)
scaffold1269 (204-258)||(1-55)
[»] scaffold0061 (1 HSPs)
scaffold0061 (48-105)||(18099-18156)
[»] scaffold1043 (1 HSPs)
scaffold1043 (43-100)||(1427-1484)
[»] chr5 (3 HSPs)
chr5 (43-100)||(25756783-25756840)
chr5 (43-100)||(25790961-25791018)
chr5 (46-90)||(24832209-24832253)
[»] chr2 (2 HSPs)
chr2 (181-249)||(23656508-23656576)
chr2 (44-100)||(23907788-23907844)
[»] chr4 (1 HSPs)
chr4 (43-100)||(19728447-19728504)
[»] scaffold0170 (1 HSPs)
scaffold0170 (44-100)||(17250-17306)
[»] scaffold0319 (1 HSPs)
scaffold0319 (227-258)||(13608-13639)


Alignment Details
Target: scaffold0091 (Bit Score: 78; Significance: 2e-36; HSPs: 3)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 181 - 258
Target Start/End: Original strand, 29057 - 29134
Alignment:
Q  181 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatc 258  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29057 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatc 29134  T

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Target: scaffold0091; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 43 - 118
Target Start/End: Original strand, 28917 - 28994
Alignment:
Q  43 gacatcatcattcaagtcatcatcataattatacgtcgtcattctcatagtca--atatatatatttacacaccaccc 118  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  28917 gacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatatatttacacaccaccc 28994  T

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Target: scaffold0091; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 43 - 105
Target Start/End: Original strand, 24720 - 24782
Alignment:
Q  43 gacatcatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatat 105  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24720 gacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatat 24782  T

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Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 181 - 258
Target Start/End: Complemental strand, 14989490 - 14989413
Alignment:
Q  181 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatc 258  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14989490 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatc 14989413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 183 - 258
Target Start/End: Complemental strand, 14980376 - 14980301
Alignment:
Q  183 catcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatc 258  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  14980376 catcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatatattatcttcgtcatc 14980301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 43 - 105
Target Start/End: Complemental strand, 14980522 - 14980460
Alignment:
Q  43 gacatcatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatat 105  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14980522 gacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatat 14980460  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 181 - 218
Target Start/End: Complemental strand, 10906939 - 10906902
Alignment:
Q  181 ctcatcatcactaacatataaacattatcatttctcat 218  Q
    |||||||||||||| |||||||||||||||||||||||    
T  10906939 ctcatcatcactaaaatataaacattatcatttctcat 10906902  T

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Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 181 - 258
Target Start/End: Complemental strand, 13882351 - 13882274
Alignment:
Q  181 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatc 258  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13882351 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatc 13882274  T

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Target: chr1; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 181 - 258
Target Start/End: Complemental strand, 51658777 - 51658700
Alignment:
Q  181 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatc 258  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51658777 ctcatcatcactaacatataaatattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatc 51658700  T

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Target: chr1; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 43 - 105
Target Start/End: Complemental strand, 13882526 - 13882464
Alignment:
Q  43 gacatcatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatat 105  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  13882526 gacaccatcattcaagtcatcatcataattatacgtcgtcattctcattgtctatatatatat 13882464  T

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Target: chr1; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 46 - 104
Target Start/End: Complemental strand, 51658912 - 51658854
Alignment:
Q  46 atcatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatata 104  Q
    |||||| ||||||||||||||||||||||||||| |||||||||| |||||||||||||    
T  51658912 atcatcgttcaagtcatcatcataattatacgtcatcattctcatcgtcaatatatata 51658854  T

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Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 196 - 249
Target Start/End: Complemental strand, 1567166 - 1567113
Alignment:
Q  196 atataaacattatcatttctcatcgtatttatttaattacatatatataatatc 249  Q
    ||||||| ||| ||||||||||||||||||||||  ||||||||||||||||||    
T  1567166 atataaatattgtcatttctcatcgtatttatttgtttacatatatataatatc 1567113  T

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Target: scaffold0218 (Bit Score: 77; Significance: 8e-36; HSPs: 2)
Name: scaffold0218
Description:

Target: scaffold0218; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 182 - 258
Target Start/End: Original strand, 14378 - 14454
Alignment:
Q  182 tcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatc 258  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14378 tcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatc 14454  T

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Target: scaffold0218; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 43 - 113
Target Start/End: Original strand, 14237 - 14307
Alignment:
Q  43 gacatcatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatatttacacac 113  Q
    |||| ||||||  |||||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||    
T  14237 gacaccatcatataagtcatcatcataattatacgtcatcattgtcatagtcaatatatatatatacacac 14307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 181 - 256
Target Start/End: Original strand, 130795 - 130870
Alignment:
Q  181 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtca 256  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  130795 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtca 130870  T

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Target: scaffold0003; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 43 - 105
Target Start/End: Original strand, 130633 - 130695
Alignment:
Q  43 gacatcatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatat 105  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  130633 gacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatat 130695  T

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Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 184 - 258
Target Start/End: Original strand, 16642300 - 16642374
Alignment:
Q  184 atcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatc 258  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16642300 atcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatc 16642374  T

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Target: chr3; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 183 - 258
Target Start/End: Complemental strand, 4712913 - 4712838
Alignment:
Q  183 catcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatc 258  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  4712913 catcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatatattatcttcgtcatc 4712838  T

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Target: chr3; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 181 - 258
Target Start/End: Complemental strand, 14055152 - 14055075
Alignment:
Q  181 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatc 258  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  14055152 ctcattatcactaacatataaacattatcatttctcatcgtatttatttaattacatatgtataatatcttcgtcatc 14055075  T

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Target: chr3; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 181 - 258
Target Start/End: Complemental strand, 14062893 - 14062816
Alignment:
Q  181 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatc 258  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  14062893 ctcatcataactaacatataaacattatcatttctcatcgtatttatttaattacatatgtataatatcttcgtcatc 14062816  T

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Target: chr3; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 43 - 105
Target Start/End: Original strand, 16642133 - 16642195
Alignment:
Q  43 gacatcatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatat 105  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16642133 gacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatat 16642195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 43 - 105
Target Start/End: Complemental strand, 4713059 - 4712997
Alignment:
Q  43 gacatcatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatat 105  Q
    |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  4713059 gacaccatcattcaagttatcatcataattatacgtcgtcattctcatagtcaatatatatat 4712997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 185 - 249
Target Start/End: Complemental strand, 13926960 - 13926896
Alignment:
Q  185 tcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatc 249  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  13926960 tcatcactaaaatataaacattatcatttctcatcgtatttatttatttaaatatatataatatc 13926896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 43 - 105
Target Start/End: Complemental strand, 14055284 - 14055222
Alignment:
Q  43 gacatcatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatat 105  Q
    ||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||    
T  14055284 gacatcatcattcaagtcatcatcataattatacgtcatcattatcatcgtcaatatatatat 14055222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 43 - 105
Target Start/End: Complemental strand, 14063045 - 14062983
Alignment:
Q  43 gacatcatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatat 105  Q
    |||| |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  14063045 gacaccatcattcaagtcatcatcataattatacgtcatcattctcatcgtcaatatatatat 14062983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 84
Target Start/End: Complemental strand, 14481838 - 14481800
Alignment:
Q  46 atcatcattcaagtcatcatcataattatacgtcgtcat 84  Q
    |||||||||||| |||||||||||||||||| |||||||    
T  14481838 atcatcattcaaatcatcatcataattatacatcgtcat 14481800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 74; Significance: 5e-34; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 181 - 258
Target Start/End: Original strand, 16060512 - 16060589
Alignment:
Q  181 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatc 258  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  16060512 ctcatcatcactaacatataaacattatcatttctcatcatatttatttaattacatatatataatatcttcgtcatc 16060589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 181 - 258
Target Start/End: Original strand, 48376787 - 48376864
Alignment:
Q  181 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatc 258  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48376787 ctcatcatcaataacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatc 48376864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 43 - 118
Target Start/End: Original strand, 16060374 - 16060449
Alignment:
Q  43 gacatcatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatatttacacaccaccc 118  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16060374 gacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatatttacacaccaccc 16060449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 43 - 105
Target Start/End: Original strand, 9080206 - 9080268
Alignment:
Q  43 gacatcatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatat 105  Q
    |||| |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  9080206 gacaccatcattcaagtcatcatcataattatacgtcatcattctcatcgtcaatatatatat 9080268  T

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Target: chr7; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 43 - 100
Target Start/End: Complemental strand, 16069067 - 16069010
Alignment:
Q  43 gacatcatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatata 100  Q
    ||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||||    
T  16069067 gacatcatcattcaaatcatcatcataattatacgtcatcattctcatcgtcaatata 16069010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 181 - 249
Target Start/End: Complemental strand, 4531865 - 4531797
Alignment:
Q  181 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatc 249  Q
    |||||||||| ||| |||||| |||||| ||||||||| ||||||||||| ||||||||||||||||||    
T  4531865 ctcatcatcaataaaatataagcattattatttctcattgtatttatttatttacatatatataatatc 4531797  T

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Target: chr7; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 43 - 98
Target Start/End: Original strand, 48376637 - 48376692
Alignment:
Q  43 gacatcatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaata 98  Q
    |||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  48376637 gacaccatcatttaagtcatcatcataattatacgtcatcattctcatagtcaata 48376692  T

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Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 181 - 218
Target Start/End: Original strand, 9080338 - 9080375
Alignment:
Q  181 ctcatcatcactaacatataaacattatcatttctcat 218  Q
    ||||||||||||||||||||||||||||||||||||||    
T  9080338 ctcatcatcactaacatataaacattatcatttctcat 9080375  T

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Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 242
Target Start/End: Complemental strand, 37945924 - 37945878
Alignment:
Q  196 atataaacattatcatttctcatcgtatttatttaattacatatata 242  Q
    ||||||||||  |||||||| |||||||||||||| |||||||||||    
T  37945924 atataaacatcgtcatttcttatcgtatttatttatttacatatata 37945878  T

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Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 59 - 100
Target Start/End: Original strand, 41744134 - 41744175
Alignment:
Q  59 tcatcatcataattatacgtcgtcattctcatagtcaatata 100  Q
    ||||||||||||||| ||||||||||||||||  ||||||||    
T  41744134 tcatcatcataattagacgtcgtcattctcatcatcaatata 41744175  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 213
Target Start/End: Complemental strand, 37946064 - 37946032
Alignment:
Q  181 ctcatcatcactaacatataaacattatcattt 213  Q
    |||||||||||||| ||||||||||||||||||    
T  37946064 ctcatcatcactaaaatataaacattatcattt 37946032  T

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Target: scaffold0063 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 43 - 118
Target Start/End: Complemental strand, 28518 - 28443
Alignment:
Q  43 gacatcatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatatttacacaccaccc 118  Q
    |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28518 gacaccatcattcaattcatcatcataattatacgtcgtcattctcatagtcaatatatatatttacacaccaccc 28443  T

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Target: scaffold0063; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 181 - 219
Target Start/End: Complemental strand, 28380 - 28342
Alignment:
Q  181 ctcatcatcactaacatataaacattatcatttctcatc 219  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  28380 ctcatcatcactaacatataaacatcatcatttctcatc 28342  T

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Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 181 - 244
Target Start/End: Original strand, 23657751 - 23657814
Alignment:
Q  181 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatata 244  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  23657751 ctcatcatcactaacatataaacattataatttctcatcgtatttatttaattacatatatata 23657814  T

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Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 181 - 258
Target Start/End: Original strand, 23658526 - 23658611
Alignment:
Q  181 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattac--------atatatataatatcttcgtcatc 258  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||        |||||||||||||||||||||||    
T  23658526 ctcatcatcactaacatataaacattataatttctcatcgtatttatttaattacacacacatatatatataatatcttcgtcatc 23658611  T

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Target: chr8; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 43 - 102
Target Start/End: Original strand, 23657648 - 23657707
Alignment:
Q  43 gacatcatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatata 102  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  23657648 gacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtctatatata 23657707  T

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Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 43 - 102
Target Start/End: Original strand, 23658423 - 23658482
Alignment:
Q  43 gacatcatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatata 102  Q
    |||| |||||||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  23658423 gacaccatcattcaagtcatcatcataattataagtcgtcattctcatagtctatatata 23658482  T

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Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 43 - 100
Target Start/End: Complemental strand, 17862303 - 17862246
Alignment:
Q  43 gacatcatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatata 100  Q
    ||||||||||||||| |||||||||||||||||| |  |||||||||| |||||||||    
T  17862303 gacatcatcattcaaatcatcatcataattataccttatcattctcatcgtcaatata 17862246  T

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Target: scaffold1269 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold1269
Description:

Target: scaffold1269; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 204 - 258
Target Start/End: Original strand, 1 - 55
Alignment:
Q  204 attatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatc 258  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  1 attatcatttctcatcgtatttatttaattacatatgtataatatcttcgtcatc 55  T

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Target: scaffold0061 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 48 - 105
Target Start/End: Complemental strand, 18156 - 18099
Alignment:
Q  48 catcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatat 105  Q
    |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  18156 catcattcaagtcatcatcataatcatacttcgtcattctcatagtcaatatatatat 18099  T

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Target: scaffold1043 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold1043
Description:

Target: scaffold1043; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 43 - 100
Target Start/End: Complemental strand, 1484 - 1427
Alignment:
Q  43 gacatcatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatata 100  Q
    ||||||||||||||| ||||||||||||||||||||  |||||||||| |||||||||    
T  1484 gacatcatcattcaaatcatcatcataattatacgttatcattctcatcgtcaatata 1427  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 43 - 100
Target Start/End: Complemental strand, 25756840 - 25756783
Alignment:
Q  43 gacatcatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatata 100  Q
    ||||||||||||||| ||||||||||||||||| ||| |||||||||| |||||||||    
T  25756840 gacatcatcattcaaatcatcatcataattataagtcatcattctcatcgtcaatata 25756783  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 43 - 100
Target Start/End: Original strand, 25790961 - 25791018
Alignment:
Q  43 gacatcatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatata 100  Q
    ||||||||||||||| ||||||||||||||||| ||| |||||||||| |||||||||    
T  25790961 gacatcatcattcaaatcatcatcataattataagtcatcattctcatcgtcaatata 25791018  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 90
Target Start/End: Complemental strand, 24832253 - 24832209
Alignment:
Q  46 atcatcattcaagtcatcatcataattatacgtcgtcattctcat 90  Q
    |||||||||||| |||||||||||||||||| || ||||||||||    
T  24832253 atcatcattcaaatcatcatcataattatacatcatcattctcat 24832209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 181 - 249
Target Start/End: Complemental strand, 23656576 - 23656508
Alignment:
Q  181 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatc 249  Q
    ||||| |||| ||| ||||||| ||||||||||||||| ||||||||||| || |||||||||||||||    
T  23656576 ctcattatcattaaaatataaatattatcatttctcattgtatttatttactttcatatatataatatc 23656508  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 44 - 100
Target Start/End: Original strand, 23907788 - 23907844
Alignment:
Q  44 acatcatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatata 100  Q
    |||||||||||||| | |||||||||| |||||||| |||||||||| |||||||||    
T  23907788 acatcatcattcaaattatcatcataaatatacgtcatcattctcatcgtcaatata 23907844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 100
Target Start/End: Complemental strand, 19728504 - 19728447
Alignment:
Q  43 gacatcatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatata 100  Q
    ||||||||||||||| |||||||||||||||||| |  |||||||||| || ||||||    
T  19728504 gacatcatcattcaaatcatcatcataattatactttatcattctcatcgttaatata 19728447  T

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Target: scaffold0170 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0170
Description:

Target: scaffold0170; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 100
Target Start/End: Original strand, 17250 - 17306
Alignment:
Q  44 acatcatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatata 100  Q
    |||||||||||||| | |||||||||| |||||| | |||||||||| |||||||||    
T  17250 acatcatcattcaaattatcatcataaatatacgccatcattctcatcgtcaatata 17306  T

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Target: scaffold0319 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0319
Description:

Target: scaffold0319; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 227 - 258
Target Start/End: Complemental strand, 13639 - 13608
Alignment:
Q  227 tttaattacatatatataatatcttcgtcatc 258  Q
    ||||||||||||||||||||||||||||||||    
T  13639 tttaattacatatatataatatcttcgtcatc 13608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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