View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0669_low_9 (Length: 508)

Name: NF0669_low_9
Description: NF0669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0669_low_9
NF0669_low_9
[»] chr4 (12 HSPs)
chr4 (89-503)||(12451508-12451921)
chr4 (126-339)||(9251554-9251767)
chr4 (107-327)||(10115474-10115692)
chr4 (134-337)||(9197983-9198186)
chr4 (150-337)||(9269364-9269552)
chr4 (89-276)||(16570367-16570550)
chr4 (323-503)||(17959001-17959180)
chr4 (126-276)||(18420020-18420170)
chr4 (134-282)||(9220761-9220907)
chr4 (241-495)||(18173749-18174003)
chr4 (144-276)||(11775233-11775365)
chr4 (388-459)||(16570821-16570892)
[»] scaffold0282 (1 HSPs)
scaffold0282 (100-501)||(19774-20172)
[»] chr2 (11 HSPs)
chr2 (89-457)||(21653276-21653642)
chr2 (126-337)||(23153909-23154120)
chr2 (126-337)||(23565166-23565377)
chr2 (135-276)||(17739946-17740086)
chr2 (329-445)||(17740682-17740798)
chr2 (129-276)||(34897843-34897990)
chr2 (188-338)||(34135355-34135506)
chr2 (187-324)||(24301937-24302075)
chr2 (241-337)||(18331449-18331545)
chr2 (101-137)||(24280629-24280665)
chr2 (451-495)||(34897621-34897665)
[»] chr1 (2 HSPs)
chr1 (128-481)||(9167059-9167416)
chr1 (238-480)||(20407138-20407385)
[»] scaffold1114 (1 HSPs)
scaffold1114 (126-442)||(193-508)
[»] scaffold0024 (1 HSPs)
scaffold0024 (89-432)||(100472-100825)
[»] chr6 (19 HSPs)
chr6 (89-347)||(12465492-12465748)
chr6 (182-438)||(14353280-14353537)
chr6 (126-301)||(12486682-12486858)
chr6 (240-501)||(20109904-20110166)
chr6 (134-305)||(9520630-9520801)
chr6 (212-383)||(23295183-23295357)
chr6 (161-445)||(23298637-23298921)
chr6 (238-437)||(14985482-14985682)
chr6 (100-275)||(23089879-23090052)
chr6 (129-295)||(14797284-14797451)
chr6 (322-445)||(19977864-19977988)
chr6 (126-309)||(22544776-22544960)
chr6 (183-338)||(17913352-17913523)
chr6 (126-231)||(22523925-22524029)
chr6 (280-337)||(21746615-21746672)
chr6 (141-217)||(14985397-14985473)
chr6 (238-276)||(14874659-14874697)
chr6 (213-297)||(14567603-14567688)
chr6 (89-132)||(23298555-23298599)
[»] chr5 (2 HSPs)
chr5 (100-481)||(24193096-24193474)
chr5 (126-337)||(17363101-17363312)
[»] scaffold0007 (2 HSPs)
scaffold0007 (187-481)||(208436-208731)
scaffold0007 (238-473)||(211551-211787)
[»] chr8 (12 HSPs)
chr8 (109-336)||(17508485-17508710)
chr8 (100-337)||(25262180-25262422)
chr8 (311-441)||(21686909-21687039)
chr8 (311-441)||(21691233-21691363)
chr8 (179-333)||(24401185-24401340)
chr8 (218-305)||(21684776-21684863)
chr8 (218-305)||(21689125-21689212)
chr8 (416-503)||(12517601-12517686)
chr8 (418-501)||(24401426-24401508)
chr8 (140-188)||(21684711-21684759)
chr8 (140-188)||(21689060-21689108)
chr8 (385-501)||(25262471-25262586)
[»] scaffold2017 (1 HSPs)
scaffold2017 (203-481)||(639-917)
[»] chr7 (15 HSPs)
chr7 (143-337)||(20147563-20147755)
chr7 (126-337)||(6461005-6461216)
chr7 (89-337)||(16195992-16196239)
chr7 (205-365)||(17162135-17162296)
chr7 (100-230)||(14973780-14973906)
chr7 (100-230)||(15403256-15403382)
chr7 (195-337)||(13488251-13488394)
chr7 (183-276)||(11775050-11775143)
chr7 (238-337)||(14266882-14266982)
chr7 (191-276)||(16093850-16093935)
chr7 (287-337)||(17492374-17492424)
chr7 (287-337)||(17560790-17560840)
chr7 (183-276)||(15010168-15010261)
chr7 (386-481)||(11774844-11774939)
chr7 (145-231)||(20911616-20911701)
[»] scaffold0111 (1 HSPs)
scaffold0111 (126-365)||(31193-31433)
[»] scaffold0417 (1 HSPs)
scaffold0417 (122-337)||(2557-2772)
[»] chr3 (15 HSPs)
chr3 (129-258)||(38277993-38278122)
chr3 (151-270)||(9637227-9637346)
chr3 (342-460)||(12805100-12805219)
chr3 (145-256)||(17385767-17385878)
chr3 (287-337)||(14305960-14306010)
chr3 (161-253)||(2547600-2547692)
chr3 (187-263)||(12794318-12794394)
chr3 (89-132)||(25486672-25486716)
chr3 (175-298)||(29650502-29650625)
chr3 (239-297)||(10711169-10711228)
chr3 (241-340)||(14262851-14262950)
chr3 (239-281)||(2279290-2279332)
chr3 (287-337)||(8900452-8900502)
chr3 (161-251)||(16219970-16220060)
chr3 (100-132)||(5346209-5346241)
[»] scaffold0959 (1 HSPs)
scaffold0959 (186-337)||(740-892)
[»] scaffold0126 (1 HSPs)
scaffold0126 (246-334)||(16342-16431)
[»] scaffold0135 (1 HSPs)
scaffold0135 (134-282)||(31412-31558)
[»] scaffold0115 (2 HSPs)
scaffold0115 (244-337)||(40620-40714)
scaffold0115 (126-262)||(40717-40853)
[»] scaffold0018 (4 HSPs)
scaffold0018 (126-333)||(53506-53711)
scaffold0018 (126-333)||(57458-57663)
scaffold0018 (368-445)||(53717-53794)
scaffold0018 (368-445)||(57669-57746)
[»] scaffold0171 (1 HSPs)
scaffold0171 (241-337)||(3664-3759)
[»] scaffold0053 (1 HSPs)
scaffold0053 (107-231)||(75897-76018)
[»] scaffold0040 (1 HSPs)
scaffold0040 (144-252)||(48442-48550)
[»] scaffold1924 (1 HSPs)
scaffold1924 (287-337)||(311-361)
[»] scaffold0333 (1 HSPs)
scaffold0333 (185-227)||(1175-1217)


Alignment Details
Target: chr4 (Bit Score: 375; Significance: 0; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 89 - 503
Target Start/End: Complemental strand, 12451921 - 12451508
Alignment:
Q  89 catcatcaatccatcaagttaaaatcaccaaagaatcatcatcagcaacaacaatcacctcaaagaaacaacaaagtttcaaagttacaattcacataaa 188  Q
    |||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  12451921 catcatcaattcatcaagttaaaatcaccaaagaatcatcatcagtaacaacaatcacctcaaagaaacaacaaagtttcaaa-ttacatttcacataaa 12451823  T
Q  189 agacggacaactatccacatcacgacattcatcatattaaacatgcaatcaacattgattcattcttattctatcatattatcatgaacataaaccaatt 288  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12451822 agacggacaactatccacatcacgacattcatcatattaaacatccaatcaacattgattcattcttattctatcatattatcatgaacataaaccaatt 12451723  T
Q  289 gcaagttatccggtcataaaatcacattttgacaaagtttgtctatttttactactttctacattttccaagtaatttgacaaaacaatgtaaacgtgtt 388  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  12451722 gcaagttatccgctcataaaatcacattttgacaaagtttgtctatttttacaactttctacattttccaagtaatttgacaaaacaatgtaaacgtgtt 12451623  T
Q  389 caaataccccaaccaagtacatacgctactcacatatgatcacagtagcatatgcatgtaaacatcataggtcactttcgattaattccaaaaattcgcc 488  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  12451622 caaataccccaacctagtacatacgctactcacatatgatcacagtagcatatgcatgtaagcatcataggtcactttcgattaattccaaaaattcgcc 12451523  T
Q  489 taagttcatctcact 503  Q
    |||||||||||||||    
T  12451522 taagttcatctcact 12451508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 126 - 339
Target Start/End: Original strand, 9251554 - 9251767
Alignment:
Q  126 atcatcagcaacaacaatcacctcaaagaaacaacaaagtttcaaagttacaattcacataaaagacggacaactatccacatcacgacattcatcatat 225  Q
    ||||||| |||||||||||| || |||||| |||||||||| |||| | ||| ||  || ||||||||||||| ||||||||||| ||||||||||| ||    
T  9251554 atcatcatcaacaacaatcaact-aaagaatcaacaaagttacaaactcacattttgcacaaaagacggacaattatccacatcaagacattcatcaaat 9251652  T
Q  226 taaacatgcaatcaacattgattcattcttattctatcatattatcatgaacataaa-ccaattgcaagttatccggtcataaaatcacattttgacaaa 324  Q
    |||||| | | ||| | |||||||||||||||| ||  |||| |||||||| |||||  |||||||||||||||||||||||||| | |||||  |||||    
T  9251653 taaacacggactcatccttgattcattcttattataaaatatcatcatgaatataaagtcaattgcaagttatccggtcataaaacctcatttcaacaaa 9251752  T
Q  325 gtttgtctattttta 339  Q
    ||| |||||||||||    
T  9251753 gttcgtctattttta 9251767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 107 - 327
Target Start/End: Complemental strand, 10115692 - 10115474
Alignment:
Q  107 ttaaaatcaccaaagaatcatcatcagcaacaacaatcacctcaaagaaacaacaaagtttcaaagttacaattcacataaaagacggacaactatccac 206  Q
    ||||||||||||||| |  ||||||| ||||||  |||||||||||||||||| || |||||||| | ||| ||  |||||||| |  |||||||  |||    
T  10115692 ttaaaatcaccaaagga--atcatcatcaacaattatcacctcaaagaaacaataacgtttcaaaatcacattttgcataaaag-cacacaactaatcac 10115596  T
Q  207 atcacgacattcatcatattaaacatgcaatcaacattgattcattcttattctatcatattatcatgaacataaa-ccaattgcaagttatccggtcat 305  Q
    |||| ||||||||| ||||||||||  ||| || || |||||||||||||||||||| ||||||| |||| | ||| ||| |||| ||||||||| ||||    
T  10115595 atcatgacattcataatattaaacacccaaccatcaatgattcattcttattctatcctattatcgtgaatacaaagccatttgcgagttatccgatcat 10115496  T
Q  306 aaaatcacattttgacaaagtt 327  Q
    |||||| |||||||||||||||    
T  10115495 aaaatctcattttgacaaagtt 10115474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 134 - 337
Target Start/End: Original strand, 9197983 - 9198186
Alignment:
Q  134 caacaacaatcacctcaaagaaacaacaaagtttcaaagttacaattcacataaaagacggacaactatccacatcacgacattcatcatattaaacatg 233  Q
    |||||||||||| || || ||| |||||||||| |||| | ||| ||  || |||||||| | || ||||||||||| ||||||||||| ||||||||      
T  9197983 caacaacaatcaactgaa-gaaccaacaaagttccaaaatcacattttgcacaaaagacgaaaaattatccacatcatgacattcatcaaattaaacacc 9198081  T
Q  234 caatcaacattgattcattcttattctatcatattatcatgaacataaa-ccaattgcaagttatccggtcataaaatcacattttgacaaagtttgtct 332  Q
    || |||   | |||||||||||||| |||||||| |||||||| ||||| |||||||||||||||||| |||||||| | |||||  ||||||||  |||    
T  9198082 cactcattgtggattcattcttattatatcatatcatcatgaatataaagccaattgcaagttatccgatcataaaacctcatttcaacaaagttcatct 9198181  T
Q  333 atttt 337  Q
    |||||    
T  9198182 atttt 9198186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 150 - 337
Target Start/End: Original strand, 9269364 - 9269552
Alignment:
Q  150 aaagaaacaacaaagtttcaaagttacaattcacataaaagacggacaactatccacatcacgacattcatcatattaaacatgcaatcaacattgattc 249  Q
    |||||| |||| |||||||||| | ||| ||  || ||||||| ||||  ||||||||||| ||||||||||| ||||||||   | ||| | |||||||    
T  9269364 aaagaatcaactaagtttcaaactcacattttgcacaaaagacagacagttatccacatcatgacattcatcaaattaaacaccgactcatccttgattc 9269463  T
Q  250 attcttattctatcatattatcatgaacataaa-ccaattgcaagttatccggtcataaaatcacattttgacaaagtttgtctatttt 337  Q
    ||||||||| ||  |||| |||||||| |||||  |||||||||||||| ||||||||||| | |||||  |||||||| |||||||||    
T  9269464 attcttattataaaatatcatcatgaatataaagtcaattgcaagttattcggtcataaaacctcatttcaacaaagttcgtctatttt 9269552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 89 - 276
Target Start/End: Original strand, 16570367 - 16570550
Alignment:
Q  89 catcatcaatccatcaagttaaaatcaccaaagaatcatcatcagcaacaacaatcacctcaaagaaacaacaaagtttcaaagttacaattcacataaa 188  Q
    ||||| ||| || |||| ||||||||||||||||||||||||     ||||| |||||||||||||||||| ||  ||||||||| ||| ||||||| ||    
T  16570367 catcaccaaaccttcaaattaaaatcaccaaagaatcatcattg---acaactatcacctcaaagaaacaataatatttcaaagtcacatttcacat-aa 16570462  T
Q  189 agacggacaactatccacatcacgacattcatcatattaaacatgcaatcaacattgattcattcttattctatcatattatcatgaa 276  Q
    |||| |||| ||| |||||||| ||||||||||||||| ||||  || |||  ||  ||||||||  ||||||||||| || ||||||    
T  16570463 agactgacatctaaccacatcatgacattcatcatattgaacacccagtcattatcaattcattcacattctatcatactaacatgaa 16570550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 323 - 503
Target Start/End: Original strand, 17959001 - 17959180
Alignment:
Q  323 aagtttgtctatttttactactttctacattttccaagtaatttgacaaaacaatgtaaacgtgttcaaataccccaaccaagtacatacgctactcaca 422  Q
    ||||| ||||||||| || ||||||  ||||||| ||||||||||||||||||| ||| || |||||||| ||| |||| ||| | || | || |||  |    
T  17959001 aagttcgtctattttaacaactttcatcattttctaagtaatttgacaaaacaaagtatacatgttcaaagacctcaacaaagcatatccactgctcgga 17959100  T
Q  423 tatgatcacagtagcatatgcatgtaaacatcataggtcactttcgattaattccaaaaattcgcctaagttcatctcact 503  Q
    ||||||||||||||||||||||| ||  ||||||||| || || | ||||||| ||||| ||   ||||||||||||||||    
T  17959101 tatgatcacagtagcatatgcatatacgcatcataggccaattcccattaatt-caaaattttctctaagttcatctcact 17959180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 126 - 276
Target Start/End: Complemental strand, 18420170 - 18420020
Alignment:
Q  126 atcatcagcaacaacaatcacctcaaagaaacaacaaagtttcaaagttacaattcacataaaagacggacaactatccacatcacgacattcatcatat 225  Q
    ||||||| ||||||| ||||||| || ||||||| |  |||| ||| | ||  ||  |||||||||||||||| || ||||||||  ||||| |||| ||    
T  18420170 atcatcatcaacaactatcaccttaaggaaacaatatcgttttaaaatcacgttttgcataaaagacggacaattaaccacatcataacatttatcaaat 18420071  T
Q  226 taaacatgcaatcaacattgattcattcttattctatcatattatcatgaa 276  Q
    ||||||  |||||| ||||||||||||||||||||||| ||| ||||||||    
T  18420070 taaacacccaatcatcattgattcattcttattctatcttatcatcatgaa 18420020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 134 - 282
Target Start/End: Original strand, 9220761 - 9220907
Alignment:
Q  134 caacaacaatcacctcaaagaaacaacaaagtttcaaagttacaattcacataaaagacggacaactatccacatcacgacattcatcatattaaacatg 233  Q
    |||||||||||| ||||| ||| |||||||||| |||| | ||| ||  |||||||||||||||| |||| |||||| ||||||||||| |||||||       
T  9220761 caacaacaatcaactcaa-gaaccaacaaagttccaaaatcacatttg-cataaaagacggacaattatctacatcatgacattcatcaaattaaacgac 9220858  T
Q  234 caatcaacattgattcattcttattctatcatattatcatgaacataaa 282  Q
    || ||| | | |||||||||| ||| |||||||| |||||||| |||||    
T  9220859 cactcatcgtggattcattctaattttatcatatcatcatgaatataaa 9220907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 241 - 495
Target Start/End: Original strand, 18173749 - 18174003
Alignment:
Q  241 cattgattcattcttattctatcatattatcatgaacataaac-caattgcaagttatccggtcataaaatcacattttgacaaagtttgtctattttta 339  Q
    ||||||||||||||| ||| ||||||| |||||||| | |||  |||||  |||| || |   |||||||   |||||| |||||||| |||||||||      
T  18173749 cattgattcattctttttccatcatatcatcatgaataaaaagtcaattataagtcattcaaccataaaacaccatttttacaaagttcgtctattttct 18173848  T
Q  340 ctactttctacattttccaagtaatttgacaaaacaatgtaaacgtgttcaaataccccaaccaagtacatacgctactcacatatgatcacagtagcat 439  Q
      |||||| | |||||| ||||||||  |||||| || |||||| | |||||| ||| |||| ||| | |||  ||||||||||||||||||| ||||||    
T  18173849 taactttcaatattttctaagtaattcaacaaaataaggtaaacatattcaaacacctcaacaaagcatatatactactcacatatgatcacaatagcat 18173948  T
Q  440 atgcatgtaaacatcataggtcactttcgattaattccaaaaattcgcctaagttc 495  Q
     ||||| ||  ||||||||| || || | | ||||||| ||||||| |||||||||    
T  18173949 ctgcatatacgcatcataggccaattccaactaattcc-aaaattcacctaagttc 18174003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 144 - 276
Target Start/End: Original strand, 11775233 - 11775365
Alignment:
Q  144 cacctcaaagaaacaacaaagtttcaaagttacaattcacataaaagacggacaactatccacatcacgacattcatcatattaaacatgcaatcaacat 243  Q
    ||||||||||||||   ||||||||||| | | | ||||| |||||||||||||  ||||||| | | || |||||||||||||||||  |||||  |||    
T  11775233 cacctcaaagaaacggtaaagtttcaaattcatatttcacctaaaagacggacatttatccacgttatgatattcatcatattaaacacccaatcctcat 11775332  T
Q  244 tgattcattcttattctatcatattatcatgaa 276  Q
      ||||||||  |||||||||||||| ||||||    
T  11775333 ctattcattcacattctatcatattaacatgaa 11775365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 388 - 459
Target Start/End: Original strand, 16570821 - 16570892
Alignment:
Q  388 tcaaataccccaaccaagtacatacgctactcacatatgatcacagtagcatatgcatgtaaacatcatagg 459  Q
    ||||| ||| |||||||  | |||| ||||||||||||||||||| |||||||||||| ||  |||||||||    
T  16570821 tcaaacacctcaaccaaacatatacactactcacatatgatcacaatagcatatgcatataggcatcatagg 16570892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0282 (Bit Score: 137; Significance: 3e-71; HSPs: 1)
Name: scaffold0282
Description:

Target: scaffold0282; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 100 - 501
Target Start/End: Complemental strand, 20172 - 19774
Alignment:
Q  100 catcaagttaaaatcaccaaagaatcatcatcagcaacaacaatcacctcaaagaaacaacaaagtttcaaagttacaattcacataaaagacggacaac 199  Q
    |||||| |||||||||||||||| ||||| |||   ||||  |||||||||||||||||||||||||||||| | ||| ||  ||||||||| ||||| |    
T  20172 catcaaattaaaatcaccaaagagtcatcgtca---acaattatcacctcaaagaaacaacaaagtttcaaaatcacattttgcataaaagatggacatc 20076  T
Q  200 tatccacatcacgacattcatcatattaaacatgcaatcaacattgattcattcttattctatcatattatcatgaaca-taaaccaattgcaagttatc 298  Q
    || |||||||| |||||||| |||||||||||  |||||| | ||||||||||||||||||||||||| ||||| | ||  || | ||||||||||||||    
T  20075 taaccacatcatgacattcaacatattaaacacccaatcatctttgattcattcttattctatcatatcatcataagcacgaagctaattgcaagttatc 19976  T
Q  299 cggtcataaaatcacattttgacaaagtttgtctatttttactactttctacattttccaagtaatttgacaaaacaatgtaaacgtgttcaaatacccc 398  Q
    ||||||| |||||||||||| |||| ||| ||||||||| |  |||||   ||||||| ||||||||   |||||||| |||||| |||||||  ||| |    
T  19975 cggtcatgaaatcacattttaacaaggttcgtctattttcaaaacttttatcattttctaagtaattccccaaaacaaggtaaacatgttcaaccacctc 19876  T
Q  399 aaccaagtacatacgctactcacatatgatcacagtagcatatgcatgtaaacatcataggtcactttcgattaattccaaaaattcgcctaagttcatc 498  Q
    ||||||| | |||| ||||||| ||||||||||| |||||||||||| ||| ||||||| | || ||   ||||||||| ||||||| ||||||||| ||    
T  19875 aaccaagcatatacactactcatatatgatcacactagcatatgcatataagcatcatatgccaattctaattaattcc-aaaattcacctaagttcgtc 19777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 124; Significance: 1e-63; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 89 - 457
Target Start/End: Original strand, 21653276 - 21653642
Alignment:
Q  89 catcatcaatccatcaagttaaaatcaccaaagaatcatcatcagcaacaacaatcacctcaaagaaacaacaaagtttcaaagttacaattcacataaa 188  Q
    |||||||||| |||||| |||||||||||||||||| |||||||   | ||| ||||| |||| |||||| ||   ||| | | | ||| || |||||||    
T  21653276 catcatcaattcatcaaattaaaatcaccaaagaataatcatca---ataactatcacttcaaggaaacatcaccttttaacaatcacattttacataaa 21653372  T
Q  189 agacggacaactatccacatcacgacattcatcatattaaacatgcaatcaacattgattcattcttattctatcatattatcatgaacataaa-ccaat 287  Q
    |||  |||||||| |||||| | | |||||||||| ||  ||| ||||||  |||||| ||| |||||||||||||| ||||||||||  |||| ||| |    
T  21653373 agaaagacaactaaccacattatgtcattcatcatttttgacacgcaatcttcattgactcaatcttattctatcatgttatcatgaaggtaaaaccatt 21653472  T
Q  288 tgcaagttatccggtcataaaatcacattttgacaaagtttgtctatttttactactttctacattttccaagtaatttgacaaaacaatgtaaacgtgt 387  Q
    |||||||||||||||||| ||| |||||||| |||| ||| ||||||||| ||  |||||||||||||| ||||||||  ||||||||| |||||| ||     
T  21653473 tgcaagttatccggtcatgaaaccacattttaacaacgttcgtctattttcaccgctttctacattttctaagtaattccacaaaacaaggtaaacatgg 21653572  T
Q  388 tcaaataccccaaccaagtacatacgctactcacatatgatcacagtagcatatgcatgtaaacatcata 457  Q
    ||||| || ||||||||| | |||| |||||||||||||||||||||||||||||||| ||| |||||||    
T  21653573 tcaaacactccaaccaagcatatacactactcacatatgatcacagtagcatatgcatataagcatcata 21653642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 126 - 337
Target Start/End: Complemental strand, 23154120 - 23153909
Alignment:
Q  126 atcatcagcaacaacaatcacctcaaagaaacaacaaagtttcaaagttacaattcacataaaagacggacaactatccacatcacgacattcatcatat 225  Q
    ||||||| ||||||  |||||||||||||||||| || |||||| |   ||| ||  || ||| |||||||||||| |||||||| | ||||||||||||    
T  23154120 atcatcatcaacaattatcacctcaaagaaacaataacgtttcacaaccacattttgcacaaa-gacggacaactaaccacatcatggcattcatcatat 23154022  T
Q  226 taaacatgcaatcaacattgattcattcttattctatcatattatcatgaacataaa-ccaattgcaagttatccggtcataaaatcacattttgacaaa 324  Q
    ||||||  ||||||  |||||||||||||||||||||| |||||| ||||  | ||| ||| |||||||||||||| |||||||| | |||||||| |||    
T  23154021 taaacacccaatcataattgattcattcttattctatcctattattatgattacaaagccatttgcaagttatccgatcataaaacctcattttgataaa 23153922  T
Q  325 gtttgtctatttt 337  Q
    ||| |||||||||    
T  23153921 gttcgtctatttt 23153909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 126 - 337
Target Start/End: Complemental strand, 23565377 - 23565166
Alignment:
Q  126 atcatcagcaacaacaatcacctcaaagaaacaacaaagtttcaaagttacaattcacataaaagacggacaactatccacatcacgacattcatcatat 225  Q
    ||||||| ||||||  |||||||||||||||||| || |||||| |   ||| ||  || ||| |||||||||||| |||||||| | ||||||||||||    
T  23565377 atcatcatcaacaattatcacctcaaagaaacaataacgtttcacaaccacattttgcacaaa-gacggacaactaaccacatcatggcattcatcatat 23565279  T
Q  226 taaacatgcaatcaacattgattcattcttattctatcatattatcatgaacataaa-ccaattgcaagttatccggtcataaaatcacattttgacaaa 324  Q
    ||||||  ||||||  |||||||||||||||||||||| |||||| ||||  | ||| ||| |||||||||||||| |||||||| | |||||||| |||    
T  23565278 taaacacccaatcataattgattcattcttattctatcctattattatgattacaaagccatttgcaagttatccgatcataaaacctcattttgataaa 23565179  T
Q  325 gtttgtctatttt 337  Q
    ||| |||||||||    
T  23565178 gttcgtctatttt 23565166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 135 - 276
Target Start/End: Original strand, 17739946 - 17740086
Alignment:
Q  135 aacaacaatcacctcaaagaaacaacaaagtttcaaagttacaattcacataaaagacggacaactatccacatcacgacattcatcatattaaacatgc 234  Q
    ||||||||||| |||||  || ||||||||||||||| | ||| ||  ||||||||||||| ||||||||| |||| |||||||| |||||||||||  |    
T  17739946 aacaacaatcaactcaat-aatcaacaaagtttcaaaatcacattttgcataaaagacggataactatccatatcatgacattcaacatattaaacactc 17740044  T
Q  235 aatcaacattgattcattcttattctatcatattatcatgaa 276  Q
    ||||| ||||||||||||||||||||||||||| ||||||||    
T  17740045 aatcatcattgattcattcttattctatcatatcatcatgaa 17740086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 329 - 445
Target Start/End: Original strand, 17740682 - 17740798
Alignment:
Q  329 gtctatttttactactttctacattttccaagtaatttgacaaaacaatgtaaacgtgttcaaataccccaaccaagtacatacgctactcacatatgat 428  Q
    ||||||||| || ||||| ||||||||| |||||||||||||||||||  ||||| |||||||| ||| |||||||| |||||| |||||||||||| ||    
T  17740682 gtctattttcaccactttttacattttctaagtaatttgacaaaacaagttaaacatgttcaaacacctcaaccaagcacatacactactcacatattat 17740781  T
Q  429 cacagtagcatatgcat 445  Q
    |||||||||||||||||    
T  17740782 cacagtagcatatgcat 17740798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 129 - 276
Target Start/End: Complemental strand, 34897990 - 34897843
Alignment:
Q  129 atcagcaacaacaatcacctcaaagaaacaacaaagtttcaaagttacaattcacataaaagacggacaactatccacatcacgacattcatcatattaa 228  Q
    |||| ||| |||||||||||||||||||| |||||||||| || | ||| ||||  |||||||| ||||||||||||||| | ||| |||||||||||||    
T  34897990 atcaccaataacaatcacctcaaagaaacgacaaagtttcgaaatcacatttcatgtaaaagacagacaactatccacattaagacgttcatcatattaa 34897891  T
Q  229 acatgcaatcaacattgattcattcttattctatcatattatcatgaa 276  Q
    |||  |||||| ||| ||||||| ||||||||||||||| | ||||||    
T  34897890 acactcaatcatcatcgattcatccttattctatcatataaacatgaa 34897843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 188 - 338
Target Start/End: Complemental strand, 34135506 - 34135355
Alignment:
Q  188 aagacggacaactatccacatcacgacattcatcatattaaacatgcaatcaacattgattcattcttattctatcatattatcatgaacataaa-ccaa 286  Q
    ||||||||||||||  |||| || || || ||||||||||||||  || ||   |||||||||| |||| | ||| |||| |||||||||||||| ||||    
T  34135506 aagacggacaactaatcacaccatgatatgcatcatattaaacacccagtccttattgattcatccttagtttattatatcatcatgaacataaagccaa 34135407  T
Q  287 ttgcaagttatccggtcataaaatcacattttgacaaagtttgtctattttt 338  Q
    ||||||||||| | ||||| ||| |||||||| || ||||| ||||||||||    
T  34135406 ttgcaagttattctgtcatgaaaccacattttaactaagttcgtctattttt 34135355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 187 - 324
Target Start/End: Original strand, 24301937 - 24302075
Alignment:
Q  187 aaagacggacaactatccacatcacgacattcatcatattaaacatgcaatcaacattgattcattcttattctatcatattatcatgaacat-aaacca 285  Q
    |||| ||||||| ||||||||| | |||||||| || ||| ||||| ||| |||||| |||||||||||||| |||| ||| ||    | ||| || | |    
T  24301937 aaagtcggacaattatccacattatgacattcaccaaattcaacatccaagcaacatagattcattcttattatatcctatcatttcaagcatgaagcta 24302036  T
Q  286 attgcaagttatccggtcataaaatcacattttgacaaa 324  Q
    |||||||| |||||||||| |||| |||||||| |||||    
T  24302037 attgcaagctatccggtcacaaaaccacattttaacaaa 24302075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 241 - 337
Target Start/End: Complemental strand, 18331545 - 18331449
Alignment:
Q  241 cattgattcattcttattctatcatattatcatgaacataaaccaattgcaagttatccggtcataaaatcacattttgacaaagtttgtctatttt 337  Q
    ||||| |||||||||||| |||||| ||  || ||| | ||| || ||||||||||| || |||||||| | ||||||||  ||||| |||||||||    
T  18331545 cattgtttcattcttattttatcatgttcccaagaatacaaatcatttgcaagttattcgatcataaaacctcattttgaacaagttcgtctatttt 18331449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 101 - 137
Target Start/End: Original strand, 24280629 - 24280665
Alignment:
Q  101 atcaagttaaaatcaccaaagaatcatcatcagcaac 137  Q
    ||||| |||||||||||||||||||||||||| ||||    
T  24280629 atcaatttaaaatcaccaaagaatcatcatcaacaac 24280665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 451 - 495
Target Start/End: Complemental strand, 34897665 - 34897621
Alignment:
Q  451 catcataggtcactttcgattaattccaaaaattcgcctaagttc 495  Q
    |||||||||||| ||  |||||||||| |||||||||||||||||    
T  34897665 catcataggtcaattatgattaattccgaaaattcgcctaagttc 34897621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 116; Significance: 9e-59; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 128 - 481
Target Start/End: Complemental strand, 9167416 - 9167059
Alignment:
Q  128 catcagcaacaacaatcacctcaaagaaacaacaaagtttcaaagttacaattcacataaaagacggacaactatccacatcacgacattcatcatatta 227  Q
    ||||| ||| ||||||||||  |||||||| ||||||||||||| | ||| |||| ||||||||||||||||||||  ||||| ||||||||||||||||    
T  9167416 catcatcaataacaatcaccctaaagaaacgacaaagtttcaaaatcacatttcatataaaagacggacaactatctgcatcatgacattcatcatatta 9167317  T
Q  228 aacatgcaatcaacattgattcattcttattctatcatattatcatgaacat-aaaccaattgcaagttatccggtc---ataaaatcacattttgacaa 323  Q
    ||||  |||||||| |||||||||||||||| || ||||| ||||| || || ||||||||| |||||| ||||| |   || ||| |||||||| ||||    
T  9167316 aacactcaatcaactttgattcattcttattttaccatatcatcattaatataaaaccaattacaagttctccggccaatatgaaaccacattttaacaa 9167217  T
Q  324 agtttgtctatttttactactttctacattttccaagtaatttgacaaaacaatgtaaacgtgttcaaataccccaaccaagtacatacgctactcacat 423  Q
    | ||  |||||||| || ||||||||||||||| ||| ||||  |||||| || |||||| ||||| || ||| |||| ||| | |||| ||||||||||    
T  9167216 acttcctctattttcacaactttctacattttctaagcaattcaacaaaaaaaggtaaacatgttctaacacctcaacaaagcatatacactactcacat 9167117  T
Q  424 atgatcacagtagcatatgcatgtaaacatcataggtcactttcgattaattccaaaa 481  Q
    || ||| || |||||||||||| ||| ||||||||| || || | || ||||||||||    
T  9167116 attatcgcaatagcatatgcatataagcatcataggacaattcctataaattccaaaa 9167059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 238 - 480
Target Start/End: Original strand, 20407138 - 20407385
Alignment:
Q  238 caacattgattcattcttattctatcatattatcatgaacat-aaaccaattgcaagttatccggtcataaaatcacattttgacaaagtttgtctattt 336  Q
    ||||||||||||||||||||| |||||  |||||||| |||| |||||||||| ||||||||||||||  |||||||||||| ||||| || ||||||||    
T  20407138 caacattgattcattcttattatatcaccttatcatgcacatcaaaccaattgtaagttatccggtcaagaaatcacattttaacaaaattcgtctattt 20407237  T
Q  337 ttactactttctacattttccaagtaatttgacaaaacaatgtaa----acgtgttcaaataccccaaccaagtacatacgctactcacatatgatcaca 432  Q
      |  ||||||||||||||| ||| ||||| ||||||||| || |    | ||| ||||| ||| |||||||| | |||| |||||||||||||||| ||    
T  20407238 ccagaactttctacattttctaagaaatttaacaaaacaaggtcaatgcatgtgatcaaacacctcaaccaagcatatacactactcacatatgatccca 20407337  T
Q  433 gtagcatatgcatgtaaacatcataggtcactttcgattaattccaaa 480  Q
    |||| |||||||| ||  ||||||| | || || |||||| |||||||    
T  20407338 gtagtatatgcatataggcatcataagccaattccgattagttccaaa 20407385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1114 (Bit Score: 113; Significance: 5e-57; HSPs: 1)
Name: scaffold1114
Description:

Target: scaffold1114; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 126 - 442
Target Start/End: Original strand, 193 - 508
Alignment:
Q  126 atcatcagcaacaacaatcacctcaaagaaacaacaaagtttcaaagttacaattcacataaaagacggacaactatccacatcacgacattcatcatat 225  Q
    ||||||| ||| |||||| ||||||||||||| ||||||||||||| | | | |||||||||| |||||||||||||||||||||  |||||||||||||    
T  193 atcatcatcaataacaattacctcaaagaaacgacaaagtttcaaaatcaaatttcacataaa-gacggacaactatccacatcaaaacattcatcatat 291  T
Q  226 taaacatgcaatcaacattgattcattcttattctatcatattatcatgaacataaaccaattgcaagttatccggtcataaaatcacattttgacaaag 325  Q
    ||||||   || || | || |||||| || |||||||||||  |||||||| | ||  |||||  ||||||||||  |||||||    ||||||||||||    
T  292 taaacaccaaaccatcgtttattcatcctcattctatcataccatcatgaataaaagtcaattataagttatccgagcataaaacattattttgacaaag 391  T
Q  326 tttgtctatttttactactttctacattttccaagtaatttgacaaaacaatgtaaacgtgttcaaataccccaaccaagtacatacgctactcacatat 425  Q
    || ||||||||| || |||||| |||||||| ||||||||| ||||||||| |||||| || ||||| ||| |||| ||||| |||  |||||||||||     
T  392 ttcgtctattttcacaactttcaacattttctaagtaatttaacaaaacaaggtaaacatgatcaaacacctcaacaaagtatatatactactcacataa 491  T
Q  426 gatcacagtagcatatg 442  Q
    |||||||||||||||||    
T  492 gatcacagtagcatatg 508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 107; Significance: 2e-53; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 89 - 432
Target Start/End: Complemental strand, 100825 - 100472
Alignment:
Q  89 catcatcaatccatcaagttaaaatcaccaaa-gaatcatcatcag---------caacaacaatcacctcaaagaaacaacaaagtttcaaagttacaa 178  Q
    |||||||||| |||||||||| |||||||||| ||||||||||||          |||||||||||||||||||| |||||||| ||| ||||||  ||     
T  100825 catcatcaattcatcaagttataatcaccaaaagaatcatcatcaaaatcaccatcaacaacaatcacctcaaaggaacaacaaggtt-caaagtcgcat 100727  T
Q  179 ttcacataaaagacggacaactatccacatcacgacattcatcatattaaacatgcaatcaacattgattcattcttattctatcatattatcatgaaca 278  Q
    ||||||||||||||||||| |||| ||||||| || ||||||||| |||||||  ||| || ||||||||||||||||||||||||||| ||| | | ||    
T  100726 ttcacataaaagacggacatctattcacatcatgatattcatcatgttaaacacccaaccatcattgattcattcttattctatcatatcatcttaagca 100627  T
Q  279 t-aaaccaattgcaagttatccggtcataaaatcacattttgacaaagtttgtctatttttactactttctacattttccaagtaatttgacaaaacaat 377  Q
    | || | |||| ||||||||||  |||| ||| ||| |||| |||||||| ||||||||| |  |||||||||| || | |||||||| ||||||||||     
T  100626 tgaagctaattacaagttatccaatcatgaaaccactttttaacaaagttcgtctattttcatcactttctacagttcctaagtaattcgacaaaacaag 100527  T
Q  378 gtaaacgtgttcaaataccccaaccaagtacatacgctactcacatatgatcaca 432  Q
    |||||   ||||||| ||| |||||||| | |||| ||||||||| |||||||||    
T  100526 gtaaataagttcaaacacctcaaccaagcatatacactactcacacatgatcaca 100472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 106; Significance: 8e-53; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 89 - 347
Target Start/End: Complemental strand, 12465748 - 12465492
Alignment:
Q  89 catcatcaatccatcaagttaaaatcaccaaagaatcatcatcagcaacaacaatcacctcaaagaaacaacaaagtttcaaagttacaattcacataaa 188  Q
    |||||||||  |||||| ||||||||||||||||||||||||||   ||||| ||||||||||  |||||| || |||||||||| ||| |||||| |||    
T  12465748 catcatcaaatcatcaaattaaaatcaccaaagaatcatcatca---acaactatcacctcaagaaaacaataatgtttcaaagtcacatttcacacaaa 12465652  T
Q  189 agacggacaactatccacatcacgacattcatcatattaaacatgcaatcaacattgattcattcttattctatcatattatcatgaaca-taaaccaat 287  Q
    ||||||||| |||   |||||| ||||||||||||||||||||  |||||| ||||||||||||||||||||||||||| |||||||| |  ||| ||||    
T  12465651 agacggacatctaaatacatcatgacattcatcatattaaacacccaatcatcattgattcattcttattctatcatatcatcatgaatacaaaatcaat 12465552  T
Q  288 tgcaagttatccggtcataaaatcacattttgacaaagtttgtctatttttactactttc 347  Q
    | |||||||| ||  |||||||   ||||||||||||||| ||||||||| || ||||||    
T  12465551 tacaagttattcgaccataaaacatcattttgacaaagttcgtctattttcacaactttc 12465492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 182 - 438
Target Start/End: Original strand, 14353280 - 14353537
Alignment:
Q  182 acataaaagacggacaactatccacatcacgacattcatcatattaaacatgcaatcaacattgattcattcttattctatcatattatcatgaacataa 281  Q
    ||||||||||||||||| || |||||| |   |||||||||| || ||||| |||||  |||||| ||| | |||| ||||||||||||||| ||  |||    
T  14353280 acataaaagacggacaattaaccacattatcccattcatcatttttaacatccaatcttcattgactcaattttatgctatcatattatcataaaagtaa 14353379  T
Q  282 a-ccaattgcaagttatccggtcataaaatcacattttgacaaagtttgtctatttttactactttctacattttccaagtaatttgacaaaacaatgta 380  Q
    | |||||||||||||||||| |||| |||||||||||| |||||||| ||| ||||| || ||||||||||||||| ||||||||  ||||||||| |||    
T  14353380 aaccaattgcaagttatccgatcatgaaatcacattttaacaaagttcgtcaattttcaccactttctacattttctaagtaattccacaaaacaaggta 14353479  T
Q  381 aacgtgttcaaataccccaaccaagtacatacgctactcacatatgatcacagtagca 438  Q
    ||| || ||||| |||||||||||| | |||| ||||||||||||||||||| |||||    
T  14353480 aacatgatcaaacaccccaaccaagcatatacactactcacatatgatcacaatagca 14353537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 126 - 301
Target Start/End: Original strand, 12486682 - 12486858
Alignment:
Q  126 atcatcagcaacaacaatcacctcaaagaaacaacaaagtttcaaagttacaattcacataaaagacggacaactatccacatcacgacattcatcatat 225  Q
    ||||||| |||||||||||||||||||||||||| | ||||||||||| ||  |||||||||||||| ||||| ||||||||| ||||||||||||||||    
T  12486682 atcatcatcaacaacaatcacctcaaagaaacaatacagtttcaaagtcacttttcacataaaagacagacaattatccacattacgacattcatcatat 12486781  T
Q  226 taaacatgcaatcaacattgattcattcttattctatcatattatcatgaacataaa-ccaattgcaagttatccgg 301  Q
    ||||||  | |||| |||||||||||||||||||||| |||| |||||||| | ||| |||||| ||| ||||||||    
T  12486782 taaacaccccatcatcattgattcattcttattctataatatcatcatgaatacaaagccaattacaaattatccgg 12486858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 240 - 501
Target Start/End: Original strand, 20109904 - 20110166
Alignment:
Q  240 acattgattcattcttattctatcatattatcatgaacataaacc-aattgcaagttatccggtcataaaatcacattttgacaaagtttgtctattttt 338  Q
    |||||||||||||||||||||||||||| ||| | | ||| || | ||||||||||||||||||||| ||| || ||||| ||||||||  ||||||||     
T  20109904 acattgattcattcttattctatcatatcatcttaatcatgaagctaattgcaagttatccggtcatgaaaccagattttaacaaagttcatctattttc 20110003  T
Q  339 actactttctacattttccaa-gtaatttgacaaaacaatgtaaacgtgttcaaataccccaaccaagtacatacgctactcacatatgatcacagtagc 437  Q
     | ||||||||||||| | || ||||||  |||||||||||||||| ||| |||| ||| |||||||| | ||||  || ||||||||||||| ||||||    
T  20110004 gccactttctacatttcctaatgtaattcaacaaaacaatgtaaacttgtgcaaacacctcaaccaagcatatacattattcacatatgatcatagtagc 20110103  T
Q  438 atatgcatgtaaacatcataggtcactttcgattaattccaaaaattcgcctaagttcatctca 501  Q
    |||| ||| ||| ||||||||| || || ||||| ||||||||| |||| |||||||| |||||    
T  20110104 atattcatataagcatcataggccaattccgattgattccaaaatttcg-ctaagttcgtctca 20110166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 134 - 305
Target Start/End: Original strand, 9520630 - 9520801
Alignment:
Q  134 caacaacaatcacctcaaagaaa-caacaaagtttcaaagttacaattcacataaaagacggacaactatccacatcacgacattcatcatattaaacat 232  Q
    |||||||||||| |||||||||| ||| |||||||||| || ||  ||||| |||| ||||||||||||||||  | | ||||||||||| ||||||||     
T  9520630 caacaacaatcaactcaaagaaaacaataaagtttcaa-gtcacctttcacctaaa-gacggacaactatccatcttatgacattcatcaaattaaacac 9520727  T
Q  233 gcaatcaacattgattcattcttattctatcatattatcatgaacataaa-ccaattgcaagttatccggtcat 305  Q
     |||||| ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||    
T  9520728 ccaatcatcattgattcattcttattctatcatatcatcatgaacataaagccaattgcaagttatccggtcat 9520801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 212 - 383
Target Start/End: Complemental strand, 23295357 - 23295183
Alignment:
Q  212 gacattcatcatattaaacatgcaatcaacattgattcattcttattctat--catattatcatgaacataaac-caattgcaagttatccggtcataaa 308  Q
    |||||||| |||||||||||| ||| |||||||||||||||||||||||||  ||||| ||| | | |||  |  |||||||||||||||||||  | ||    
T  23295357 gacattcaccatattaaacatccaaccaacattgattcattcttattctatatcatatcatcttaagcatgtagtcaattgcaagttatccggttttgaa 23295258  T
Q  309 atcacattttgacaaagtttgtctatttttactactttctacattttccaagtaatttgacaaaacaatgtaaac 383  Q
    |||||||||| |||||||||||||||||| || ||||||||||||||| ||||||||| ||||||||| ||||||    
T  23295257 atcacattttaacaaagtttgtctattttaaccactttctacattttctaagtaattttacaaaacaaggtaaac 23295183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 161 - 445
Target Start/End: Original strand, 23298637 - 23298921
Alignment:
Q  161 aaagtttcaaagttacaattcacataaaagacggacaactatccacatcacgacattcatcatattaaacatgcaatcaacattgattcattcttattct 260  Q
    ||||||||||| | ||| ||  ||||||||||||||||||| |||||||| | |||||||  |||| || |  |||||| ||||||||||||| |||  |    
T  23298637 aaagtttcaaaatcacattttgcataaaagacggacaactaaccacatcatggcattcattgtatttaatactcaatcatcattgattcattcgtatcat 23298736  T
Q  261 atcatattatcatgaacataaa-ccaattgcaagttatccggtcataaaatcacattttgacaaagtttgtctatttttactactttctacattttccaa 359  Q
    ||| |||||||||||   |||| ||| || |||||||||| ||| ||||  |||||||| | |||||| ||||||||| || |||||| |||||||| ||    
T  23298737 atcctattatcatgagagtaaagccacttacaagttatccagtcttaaac-cacattttaataaagttcgtctattttcacaactttccacattttctaa 23298835  T
Q  360 gtaatttgacaaaacaatgtaaacgtgttcaaataccccaaccaagtacatacgctactcacatatgatcacagtagcatatgcat 445  Q
    ||||||  ||||||||| ||||||  | ||||| |||  ||| ||| | |||| ||||||||||| ||||||||||||||||||||    
T  23298836 gtaattcaacaaaacaaggtaaacacgatcaaacacctaaacaaagcatatacactactcacataagatcacagtagcatatgcat 23298921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 238 - 437
Target Start/End: Original strand, 14985482 - 14985682
Alignment:
Q  238 caacattgattcattcttattctatcatattatcatgaacataaa-ccaattgcaagttatccggtcataaaatcacattttgacaaagtttgtctattt 336  Q
    ||||| ||||||||||||||| || ||||| |||||||| ||||| ||||||||||||||| ||||||| |||||| ||||| ||||||||  |||||||    
T  14985482 caacaatgattcattcttattttaccatatcatcatgaagataaaaccaattgcaagttattcggtcatgaaatcatattttaacaaagttcatctattt 14985581  T
Q  337 ttactactttctacattttccaagtaatttgacaaaacaatgtaaacgtgttcaaataccccaaccaagtacatacgctactcacatatgatcacagtag 436  Q
    | || ||||||||||| ||| ||| || || ||||||||| ||| || |||||||| | | |||| ||| | |||  ||| |||||||||||||||||||    
T  14985582 tcaccactttctacatcttctaagcaagttaacaaaacaaggtatacatgttcaaacaactcaacaaagcatataaactagtcacatatgatcacagtag 14985681  T
Q  437 c 437  Q
    |    
T  14985682 c 14985682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 100 - 275
Target Start/End: Complemental strand, 23090052 - 23089879
Alignment:
Q  100 catcaagttaaaatcaccaaagaatcatcatcagcaacaacaatcacctcaaagaaacaacaaagtttcaaagttacaattcacataaaagacggacaac 199  Q
    |||||||||| ||||||||||  | ||| |||| ||||||  |||||||||||||||||| || |||||| |   ||| ||  ||||| | |||||||||    
T  23090052 catcaagttagaatcaccaaa--agcattatcatcaacaagtatcacctcaaagaaacaataacgtttcacaaccacattttgcataagaaacggacaac 23089955  T
Q  200 tatccacatcacgacattcatcatattaaacatgcaatcaacattgattcattcttattctatcatattatcatga 275  Q
    || |||||||| ||||||||||||||||||||  ||| || |||||||||||||||||||||||||||||| ||||    
T  23089954 taaccacatcatgacattcatcatattaaacacccaaccatcattgattcattcttattctatcatattattatga 23089879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 129 - 295
Target Start/End: Original strand, 14797284 - 14797451
Alignment:
Q  129 atcagcaacaacaatcacctcaaagaaacaacaaagtttcaaagtt-acaattcacataaaagacggacaactatccacatcacgacattcatcatatta 227  Q
    |||| ||||||||||||||||||  |||||||||| |||||||  | ||| ||||||| |||||||||||  || |||||||| | |||||| |||||||    
T  14797284 atcatcaacaacaatcacctcaagaaaacaacaaaatttcaaaaatcacatttcacatcaaagacggacatttaaccacatcatggcattcaacatatta 14797383  T
Q  228 aacatgcaatcaacattgattcattcttattctatcatattatcatgaacataaaccaattgcaagtt 295  Q
    ||||| |||||  |||| |||||||||||||||||||||| |||||||| |||| ||| || ||||||    
T  14797384 aacattcaatcgtcattaattcattcttattctatcatatcatcatgaatataatccatttacaagtt 14797451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 322 - 445
Target Start/End: Complemental strand, 19977988 - 19977864
Alignment:
Q  322 aaagtttgtctatttttactactttctacattttcc-aagtaatttgacaaaacaatgtaaacgtgttcaaataccccaaccaagtacatacgctactca 420  Q
    |||||||||||||||| || ||||||||||||||   ||||| ||  |||||||||||||||| || ||||| ||| ||||||||   |||| |||||||    
T  19977988 aaagtttgtctattttcaccactttctacatttttttaagtatttcaacaaaacaatgtaaacatgatcaaacacctcaaccaagcttatacactactca 19977889  T
Q  421 catatgatcacagtagcatatgcat 445  Q
    |||||||| |||||||| |||||||    
T  19977888 catatgatgacagtagcttatgcat 19977864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 126 - 309
Target Start/End: Original strand, 22544776 - 22544960
Alignment:
Q  126 atcatcagcaacaacaatcacctcaaagaaacaacaaagtttcaaagttacaattcacataaaagacggacaactatccacatcacgacattcatcatat 225  Q
    ||||||| | ||||| ||||||||||| |||||  |  |||||||| | ||| ||  ||||||||||||||||||| |||||||| || |||||||||||    
T  22544776 atcatcatcgacaactatcacctcaaataaacattaccgtttcaaaatcacattttgcataaaagacggacaactaaccacatcatgatattcatcatat 22544875  T
Q  226 taaacatgcaatcaacattgattcattcttattctatcatattatcatgaacataaa-ccaattgcaagttatccggtcataaaa 309  Q
    | ||||   ||||| ||||||||||| |||||  |||| ||||||||| |  | |||  || |||||||||||||| ||||||||    
T  22544876 tcaacactaaatcatcattgattcatgcttatcttatcctattatcataattacaaagacatttgcaagttatccgatcataaaa 22544960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 183 - 338
Target Start/End: Original strand, 17913352 - 17913523
Alignment:
Q  183 cataaaagacggacaactatccacatcacgacattcatcatattaaacatgcaatcaacattga---------------ttcattcttattctatcatat 267  Q
    ||||||||| ||||||||| |||||||| ||||||||||||||||||||  |||||| ||||||               |||||||||||| |||| |||    
T  17913352 cataaaagatggacaactaaccacatcatgacattcatcatattaaacacccaatcatcattgacctcatcatcattgtttcattcttattgtatcctat 17913451  T
Q  268 tatcatgaacataaa-ccaattgcaagttatccggtcataaaatcacattttgacaaagtttgtctattttt 338  Q
    |||||| | || ||| ||||||||||||||| || |||||||| | |||||||||||| || || |||||||    
T  17913452 tatcataatcacaaatccaattgcaagttattcgatcataaaacctcattttgacaaacttcgtttattttt 17913523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 126 - 231
Target Start/End: Complemental strand, 22524029 - 22523925
Alignment:
Q  126 atcatcagcaacaacaatcacctcaaagaaacaacaaagtttcaaagttacaattcacataaaagacggacaactatccacatcacgacattcatcatat 225  Q
    ||||||| |||||||| ||| |||||||||||||||| ||| |||| | ||| ||||||| ||||||||||   || |||||||| |||||||||||  |    
T  22524029 atcatcatcaacaacattcatctcaaagaaacaacaaggttccaaattcacatttcacat-aaagacggacttgtagccacatcatgacattcatcaatt 22523931  T
Q  226 taaaca 231  Q
    ||||||    
T  22523930 taaaca 22523925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 280 - 337
Target Start/End: Complemental strand, 21746672 - 21746615
Alignment:
Q  280 aaaccaattgcaagttatccggtcataaaatcacattttgacaaagtttgtctatttt 337  Q
    |||||| |||||||||||||| |||||||| | ||||||||| ||||| |||||||||    
T  21746672 aaaccatttgcaagttatccgatcataaaacctcattttgactaagttcgtctatttt 21746615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 141 - 217
Target Start/End: Original strand, 14985397 - 14985473
Alignment:
Q  141 aatcacctcaaagaaacaacaaagtttcaaagttacaattcacataaaagacggacaactatccacatcacgacatt 217  Q
    |||| ||||||| ||||||||| |||||||  | ||  ||||||||||||||||| ||||| |||||||| ||||||    
T  14985397 aatctcctcaaaaaaacaacaaggtttcaatttcacgtttcacataaaagacggataactacccacatcatgacatt 14985473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 238 - 276
Target Start/End: Complemental strand, 14874697 - 14874659
Alignment:
Q  238 caacattgattcattcttattctatcatattatcatgaa 276  Q
    |||||||||||||||||||||  ||||||||||||||||    
T  14874697 caacattgattcattcttatttcatcatattatcatgaa 14874659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 213 - 297
Target Start/End: Complemental strand, 14567688 - 14567603
Alignment:
Q  213 acattcatcatattaaacatgcaatcaacattgattcattcttattctatcatattatcatgaacataaa-ccaattgcaagttat 297  Q
    ||||||| ||||||| |||| |||||| |||  ||||||| |||||||||  ||  |||||||||||||| | |||||||||||||    
T  14567688 acattcaacatattagacatccaatcatcatcaattcatttttattctatactaccatcatgaacataaagcaaattgcaagttat 14567603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 89 - 132
Target Start/End: Original strand, 23298555 - 23298599
Alignment:
Q  89 catcatcaatccatcaagttaaaatcaccaaag-aatcatcatca 132  Q
    |||||||||| |||||||||||||||||||| | |||||||||||    
T  23298555 catcatcaattcatcaagttaaaatcaccaaggaaatcatcatca 23298599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 101; Significance: 8e-50; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 100 - 481
Target Start/End: Original strand, 24193096 - 24193474
Alignment:
Q  100 catcaagttaaaatcaccaaagaatcatcatcagcaacaacaatcacctcaaagaaacaacaaagtttcaaagttacaattcacataaaagacggacaac 199  Q
    |||||| || |||| ||||||||||||||||||   |||||||||| || ||||||||||||||||| |||| | |||  |  |||||| ||   | ||     
T  24193096 catcaaatttaaattaccaaagaatcatcatca---acaacaatcaacttaaagaaacaacaaagttccaaaatcacatcttgcataaacgataaaaaat 24193192  T
Q  200 tatccacatcacgacattcatcatattaaacatgcaatcaacattgattcattcttattctatcatattatcatgaacataaac-caattgcaagttatc 298  Q
    ||||||| ||| |||||| |||||||||||||| ||||   |||||||||||||||||| || ||||| ||| | | ||| ||  |||||||||||||||    
T  24193193 tatccacgtcatgacattaatcatattaaacatccaattctcattgattcattcttattataacatatcatcttaagcatgaagtcaattgcaagttatc 24193292  T
Q  299 cggtcataaaatcacattttgacaaagtttgtctatttttactactttctacattttccaagtaatttgacaaaacaatgtaaacgtgttcaaatacccc 398  Q
    ||||||| |||||||||||| |||||||| ||||||||  || |||||||||| |||| ||||||||  |||||| || |||||| ||| | || ||| |    
T  24193293 cggtcatgaaatcacattttaacaaagttcgtctatttccacaactttctaca-tttctaagtaattcaacaaaataaggtaaacatgtcctaacacctc 24193391  T
Q  399 aaccaagtacatacgctactcacatatgatcacagtagcatatgcatgtaaacatcataggtcactttcgattaattccaaaa 481  Q
    ||||||| | |||| ||||||||||||||| | ||||||| |||||| ||  ||| ||||| || ||  ||||||||||||||    
T  24193392 aaccaagcatatacactactcacatatgattagagtagcacatgcatataggcattataggccaattctgattaattccaaaa 24193474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 126 - 337
Target Start/End: Original strand, 17363101 - 17363312
Alignment:
Q  126 atcatcagcaacaacaatcacctcaaagaaacaacaaagtttcaaagttacaattcacataaaagacggacaactatccacatcacgacattcatcatat 225  Q
    ||||||| || | |||||||||||||||||| |||||||||||||| | | ||||||||| ||| ||||||||||| |||| ||| | |||||| |||||    
T  17363101 atcatcatcatcgacaatcacctcaaagaaataacaaagtttcaaaatcataattcacatcaaa-acggacaactaaccacttcatggcattcaacatat 17363199  T
Q  226 taaacatgcaatcaacattgattcattcttattctatcatattatc--atgaacataaaccaattgcaagttatccggtcataaaatcacattttgacaa 323  Q
    ||||||   | ||| |||||||||||||||||||||||||||||||  ||| ||| || ||||||||||||||||||||||| ||| |||||||| ||||    
T  17363200 taaacacctactcatcattgattcattcttattctatcatattatcttatgcaca-aagccaattgcaagttatccggtcatgaaaccacattttaacaa 17363298  T
Q  324 agtttgtctatttt 337  Q
    |||| |||||||||    
T  17363299 agttcgtctatttt 17363312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 100; Significance: 3e-49; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 187 - 481
Target Start/End: Complemental strand, 208731 - 208436
Alignment:
Q  187 aaagacggacaactatccacatcacgacattcatcatattaaacatgcaatcaacattgattcattcttattctatcatattatcatgaacataaa-cca 285  Q
    ||||||||||| ||| ||||| || || ||||||||  ||| |||| | | ||||||| ||||||||||||| ||||||| ||||||||||||||| |||    
T  208731 aaagacggacacctaaccacaacatgatattcatcactttagacatccgaccaacattcattcattcttattttatcatactatcatgaacataaaacca 208632  T
Q  286 attgcaagttatccggtcataaaatcacattttgacaaagtttgtctatttttactactttctacattttccaagtaatttgacaaaacaatgtaaacgt 385  Q
    |||| ||||||||| ||||  |||| |||  || |||||||||||||||||  || |||||||| |||||| ||||||||  | ||||||| ||||||||    
T  208631 attgtaagttatccagtcaagaaattacacattaacaaagtttgtctatttccacaactttctatattttctaagtaattcaataaaacaaggtaaacgt 208532  T
Q  386 gttcaaataccccaaccaagtacatacgctactcacatatgatcacagtagcatatgcatgtaaacatcataggtcactttcgattaattccaaaa 481  Q
    | ||||| ||| |||||||| | |||| ||||||||||||||||||| || |||||||||  |  ||||||||| || ||  ||||||||||||||    
T  208531 gatcaaacacctcaaccaagcatatacactactcacatatgatcacaataacatatgcatacaggcatcataggccaattctgattaattccaaaa 208436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 238 - 473
Target Start/End: Complemental strand, 211787 - 211551
Alignment:
Q  238 caacattgattcattcttattctatcatattatcatgaacataaa-ccaattgcaagttatccggtcataaaatcacattttgacaaagtttgtctattt 336  Q
    |||||||||||||||||||| |||||||| ||||||||||||||| ||||||| ||||||||| ||||  ||||||||  || |||||||||||||||||    
T  211787 caacattgattcattcttatactatcatactatcatgaacataaaaccaattgtaagttatccagtcaagaaatcacacattaacaaagtttgtctattt 211688  T
Q  337 ttactactttctacattttccaagtaatttgacaaaacaatgtaaacgtgttcaaataccccaaccaagtacatacgctactcacatatgatcacagtag 436  Q
     | | |||||||| |||||| ||||||||  | ||| ||| ||||||||| ||||| ||| |||||||  | |||| |||||||||||||||||||||||    
T  211687 ctgcaactttctatattttctaagtaattcaataaagcaaggtaaacgtgatcaaacacctcaaccaaacatatacactactcacatatgatcacagtag 211588  T
Q  437 catatgcatgtaaacatcataggtcactttcgattaa 473  Q
    ||||| ||| ||  ||||||||| || || |||||||    
T  211587 catattcatataggcatcataggccaattccgattaa 211551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 95; Significance: 3e-46; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 109 - 336
Target Start/End: Original strand, 17508485 - 17508710
Alignment:
Q  109 aaaatcaccaaagaatcatcatcagcaacaacaatcacctcaaagaaacaacaaagtttcaaagttacaattcacataaaagacggacaactatccacat 208  Q
    ||||||||||||||||||||||||   ||||| || |||||||||||||||||| |||| ||||| | | ||   |||||||| ||| ||||||||||||    
T  17508485 aaaatcaccaaagaatcatcatca---acaactattacctcaaagaaacaacaatgttttaaagtcagattttgaataaaagatggataactatccacat 17508581  T
Q  209 cacgacattcatcatattaaacatgcaatcaacattgattcattcttattctatcatattatcatgaacataaa-ccaattgcaagttatccggtcataa 307  Q
    || ||||||||||||||||||||  |||||| ||||||||||||| ||||||||||||| | |||||  | ||| |||||||||||||||||| ||||||    
T  17508582 catgacattcatcatattaaacacccaatcatcattgattcattcatattctatcatatcaacatgagtacaaagccaattgcaagttatccgatcataa 17508681  T
Q  308 aatcacattttgacaaagtttgtctattt 336  Q
    || | |||||  |||||||| ||||||||    
T  17508682 aacctcatttcaacaaagttcgtctattt 17508710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 100 - 337
Target Start/End: Original strand, 25262180 - 25262422
Alignment:
Q  100 catcaagttaaaatcaccaaag-aatcatcatcagcaacaacaat---cacctcaaagaaacaacaaagtttcaaagttacaattcacataaaagacgga 195  Q
    |||||||||||||||||||||| ||||||||||| |||||||| |   |||||  || |||| | ||||||||| | |  || || || ||||||||| |    
T  25262180 catcaagttaaaatcaccaaaggaatcatcatcatcaacaacatttaacacctgtaaaaaacgataaagtttcacaatatcattttacgtaaaagacgaa 25262279  T
Q  196 caactatccacatcacgacattcatcatattaaacatgcaatcaacattgattcattcttattctatcatattatcatgaacata-aaccaattgcaagt 294  Q
    ||| ||||||||| |  ||||||| |||||||||||  || ||| ||||||||||||||||| ||||||||||| ||||||  || ||||| || |||||    
T  25262280 caattatccacattaaaacattcaccatattaaacagtcattcatcattgattcattcttatcctatcatattaccatgaaggtacaaccatttacaagt 25262379  T
Q  295 tatccggtcataaaatcacattttgacaaagtttgtctatttt 337  Q
    ||||| |||  |||||| | |||||||||||||  ||||||||    
T  25262380 tatccagtctaaaaatctctttttgacaaagttcatctatttt 25262422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 311 - 441
Target Start/End: Original strand, 21686909 - 21687039
Alignment:
Q  311 cacattttgacaaagtttgtctatttttactactttctacattttccaagtaatttgacaaaacaatgtaaacgtgttcaaataccccaaccaagtacat 410  Q
    |||||||| |||||||| ||||||||| || |||||||| |||||| ||||||||  ||||||||| |||||| || ||||| ||| |||| | | ||||    
T  21686909 cacattttaacaaagttcgtctattttcaccactttctatattttctaagtaattcaacaaaacaaggtaaacatgatcaaacacctcaacaaggcacat 21687008  T
Q  411 acgctactcacatatgatcacagtagcatat 441  Q
    || |||||||||||||||||||||| |||||    
T  21687009 acactactcacatatgatcacagtaccatat 21687039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 311 - 441
Target Start/End: Original strand, 21691233 - 21691363
Alignment:
Q  311 cacattttgacaaagtttgtctatttttactactttctacattttccaagtaatttgacaaaacaatgtaaacgtgttcaaataccccaaccaagtacat 410  Q
    |||||||| |||||||| ||||||||| || |||||||| |||||| ||||||||  ||||||||| |||||| || ||||| ||| |||| | | ||||    
T  21691233 cacattttaacaaagttcgtctattttcaccactttctatattttctaagtaattcaacaaaacaaggtaaacatgatcaaacacctcaacaaggcacat 21691332  T
Q  411 acgctactcacatatgatcacagtagcatat 441  Q
    || |||||||||||||||||||||| |||||    
T  21691333 acactactcacatatgatcacagtaccatat 21691363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 179 - 333
Target Start/End: Original strand, 24401185 - 24401340
Alignment:
Q  179 ttcacataaaagacggacaactatccacatcacgacattcatcatattaaacatgcaatcaacattgattcattcttattctatcatattatcatgaaca 278  Q
    ||||||||||||| ||||||||  |||||||| |||||| ||||| || ||||   ||||  |||||||| ||||||||| |||| |||||||||||| |    
T  24401185 ttcacataaaagatggacaactgaccacatcatgacatttatcatttttaacacaaaatcttcattgattaattcttattgtatcctattatcatgaaaa 24401284  T
Q  279 t-aaaccaattgcaagttatccggtcataaaatcacattttgacaaagtttgtcta 333  Q
    | ||| || || |||||||||||||  ||||||| | ||||||||||||| |||||    
T  24401285 taaaatcatttacaagttatccggtgttaaaatctctttttgacaaagttcgtcta 24401340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 218 - 305
Target Start/End: Original strand, 21684776 - 21684863
Alignment:
Q  218 catcatattaaacatgcaatcaacattgattcattcttattctatcatattatcatgaacataaa-ccaattgcaagttatccggtcat 305  Q
    ||||||||||||||  |||||||||||||||||||||||||| | || || |||||| ||||||| |||||||||| |||| |||||||    
T  21684776 catcatattaaacacccaatcaacattgattcattcttattcca-cagatcatcatggacataaagccaattgcaaattattcggtcat 21684863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 218 - 305
Target Start/End: Original strand, 21689125 - 21689212
Alignment:
Q  218 catcatattaaacatgcaatcaacattgattcattcttattctatcatattatcatgaacataaa-ccaattgcaagttatccggtcat 305  Q
    ||||||||||||||  |||||||||||||||||||||||||| | || || |||||| ||||||| |||||||||| |||| |||||||    
T  21689125 catcatattaaacacccaatcaacattgattcattcttattcca-cagatcatcatggacataaagccaattgcaaattattcggtcat 21689212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 416 - 503
Target Start/End: Original strand, 12517601 - 12517686
Alignment:
Q  416 actcacatatgatcacagtagcatatgcatgtaaacatcataggtcactttcgattaattccaaaaattcgcctaagttcatctcact 503  Q
    ||||||||| |||||||||||||||||||| | | ||||||||| || || ||||||||||| ||||||| ||||||||| |||||||    
T  12517601 actcacataagatcacagtagcatatgcatat-agcatcataggacaattccgattaattcc-aaaattcacctaagttcgtctcact 12517686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 418 - 501
Target Start/End: Original strand, 24401426 - 24401508
Alignment:
Q  418 tcacatatgatcacagtagcatatgcatgtaaacatcataggtcactttcgattaattccaaaaattcgcctaagttcatctca 501  Q
    |||||||||||||||||||||||| ||| |  |||||||| | || |||||||||||||| ||||||| ||||||||| |||||    
T  24401426 tcacatatgatcacagtagcatatacatatccacatcataagccaatttcgattaattcc-aaaattcacctaagttcgtctca 24401508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 140 - 188
Target Start/End: Original strand, 21684711 - 21684759
Alignment:
Q  140 caatcacctcaaagaaacaacaaagtttcaaagttacaattcacataaa 188  Q
    |||||||||||||||||| |||| |||||||| ||||| ||||||||||    
T  21684711 caatcacctcaaagaaacgacaaggtttcaaaattacatttcacataaa 21684759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 140 - 188
Target Start/End: Original strand, 21689060 - 21689108
Alignment:
Q  140 caatcacctcaaagaaacaacaaagtttcaaagttacaattcacataaa 188  Q
    |||||||||||||||||| |||| |||||||| ||||| ||||||||||    
T  21689060 caatcacctcaaagaaacgacaaggtttcaaaattacatttcacataaa 21689108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 385 - 501
Target Start/End: Original strand, 25262471 - 25262586
Alignment:
Q  385 tgttcaaataccccaaccaagtacatacgctactcacatatgatcacagtagcatatgcatgtaaacatcataggtcactttcgattaattccaaaaatt 484  Q
    |||||||| ||| |||| ||| | |||| ||  |||||||| ||||||||||||||| ||| |  |||||||| | || || ||||||||||| ||||||    
T  25262471 tgttcaaacacctcaacaaagcatatacactcatcacatattatcacagtagcatatacatatccacatcataagccaattccgattaattcc-aaaatt 25262569  T
Q  485 cgcctaagttcatctca 501  Q
    | ||||||||| |||||    
T  25262570 cacctaagttcgtctca 25262586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2017 (Bit Score: 80; Significance: 3e-37; HSPs: 1)
Name: scaffold2017
Description:

Target: scaffold2017; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 203 - 481
Target Start/End: Original strand, 639 - 917
Alignment:
Q  203 ccacatcacgacattcatcatattaaacatgcaatcaacattgattcattcttattctatcatattatcatgaacataaa-ccaattgcaagttatccgg 301  Q
    |||||||| || ||| |||| || |||||| |||  ||||||||||||||||| ||| || |||||||||| |||||||| ||||||| |||| || |||    
T  639 ccacatcatgatatttatcacatcaaacatccaaataacattgattcattcttcttccattatattatcatcaacataaaaccaattgtaagt-atacgg 737  T
Q  302 tcataaaatcacattttgacaaagtttgtctatttttactactttctacattttccaagtaatttgacaaaacaatgtaaacgtgttcaaataccccaac 401  Q
    |||  |||| ||||||| |||||||| ||||||||  || ||||| ||||||||| ||  |||| |||||||||| |||||| || ||||||| | ||||    
T  738 tcaagaaataacattttaacaaagttcgtctatttccacaactttttacattttctaataaattcgacaaaacaaggtaaacatgatcaaatatctcaac 837  T
Q  402 caagtacatacgctactcacatatgatcacagtagcatatgcatgtaaacatcataggtcactttcgattaattccaaaa 481  Q
    |||  | ||||  ||||||||||||||||||||||| ||| ||| ||  ||||||||| || || |||||||||| ||||    
T  838 caaaaatatacaatactcacatatgatcacagtagcttatacatataggcatcataggccaattccgattaattcaaaaa 917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 6e-35; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 143 - 337
Target Start/End: Original strand, 20147563 - 20147755
Alignment:
Q  143 tcacctcaaagaaacaacaaagtttcaaagttacaattcacataaaagacggacaactatccacatcacgacattcatcatattaaacatgcaatcaaca 242  Q
    |||| |||||||||||| |||||||||  || | | ||  |||||||||||||||||||||||||||| ||||||||||||||| ||||  ||||||  |    
T  20147563 tcacatcaaagaaacaataaagtttca--gtcatattttgcataaaagacggacaactatccacatcaagacattcatcatattgaacacccaatcatta 20147660  T
Q  243 ttgattcattcttattctatcatattatcatgaacataaaccaattgcaagttatccggtcataaaatcacattttgacaaagtttgtctatttt 337  Q
    ||| ||||||||||||||||||||| |||||||||| ||  || || |||||||| || ||||||||   ||||||||||||||| |||| ||||    
T  20147661 ttggttcattcttattctatcatatcatcatgaacacaagacatttacaagttattcgatcataaaacatcattttgacaaagttcgtctttttt 20147755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 126 - 337
Target Start/End: Complemental strand, 6461216 - 6461005
Alignment:
Q  126 atcatcagcaacaacaatcacctcaaagaaacaacaaagtttcaaagttacaattcacataaaagacggacaactatccacatcacgacattcatcatat 225  Q
    ||||||| ||||||  |||||||||||||||||| || |||||| | | ||| ||  |||||| |||||||||||| |||||||| |||  |||||||||    
T  6461216 atcatcatcaacaattatcacctcaaagaaacaataacgtttcacaatcacattttgcataaa-gacggacaactaaccacatcatgactatcatcatat 6461118  T
Q  226 taaacatgcaatcaacattgattcattcttattctatcatattatcatgaacataaa-ccaattgcaagttatccggtcataaaatcacattttgacaaa 324  Q
    ||||||  ||| || ||||| ||||||||||||||||| |||||| | ||| | ||| ||| ||||||||||||||  ||||||| | ||||||||||||    
T  6461117 taaacacccaaccatcattgtttcattcttattctatcctattattaagaatacaaagccatttgcaagttatccgaccataaaacctcattttgacaaa 6461018  T
Q  325 gtttgtctatttt 337  Q
    ||| || ||||||    
T  6461017 gttcgtgtatttt 6461005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 89 - 337
Target Start/End: Original strand, 16195992 - 16196239
Alignment:
Q  89 catcatcaatccatcaagttaaaatcaccaaagaatcatcatcagcaacaacaatcacctcaaagaaacaacaaagtttcaaagttacaattcacataaa 188  Q
    |||||||||| |||||||||||||||||||||| |  ||||||| |||||   | ||||| |||||||| | ||||||||| | |  |  || |||||||    
T  16195992 catcatcaattcatcaagttaaaatcaccaaagga--atcatcatcaacattta-cacctgaaagaaacgataaagtttcacaatcccgttttacataaa 16196088  T
Q  189 agacggacaactatccacatcacgacattcatcatattaaacatgcaatcaacattgattcattcttattctatcatattatcatgaacat-aaaccaat 287  Q
    |||||||||| ||||||||  | |||||||| |||||||||||  || ||| ||||||||||||| |||   ||||||||||||||||  | |||  | |    
T  16196089 agacggacaattatccacaataagacattcaccatattaaacacccattcatcattgattcattcgtatatgatcatattatcatgaaggtaaaattatt 16196188  T
Q  288 tgcaagttatccggtcataaaat-cacattttgacaaagtttgtctatttt 337  Q
    | |||||||||||||| ||||||  |  |||||||||||||||||||||||    
T  16196189 tacaagttatccggtcttaaaatatattttttgacaaagtttgtctatttt 16196239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 205 - 365
Target Start/End: Complemental strand, 17162296 - 17162135
Alignment:
Q  205 acatcacgacattcatcatattaaacatgcaatcaacattgattcattcttattctatcatattatcatgaacataaa-ccaattgcaagttatccggtc 303  Q
    |||||| |||||||||||||||||||    ||||| |||| |||||||||||||||||||||| ||||| | || ||| |||||| |||| ||||| |      
T  17162296 acatcatgacattcatcatattaaacccctaatcatcatttattcattcttattctatcatatcatcataagcacaaagccaattacaagctatccaggt 17162197  T
Q  304 ataaaatcacattttgacaaagtttgtctatttttactactttctacattttccaagtaatt 365  Q
    |||||| | |||||  |||||||| ||||||||| || ||||||  ||||||| ||||||||    
T  17162196 ataaaacctcatttcaacaaagttcgtctattttcacaactttcatcattttctaagtaatt 17162135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 100 - 230
Target Start/End: Complemental strand, 14973906 - 14973780
Alignment:
Q  100 catcaagttaaaatcaccaaagaatcatcatcagcaacaacaatcacctcaaagaaacaacaaagtttcaaagttacaattcacataaaagacggacaac 199  Q
    |||||| |||||||||| ||||||||||||||    ||||| |||||||||||||||||| ||  ||||||||| ||| ||||||| ||||| ||||  |    
T  14973906 catcaaattaaaatcacaaaagaatcatcatcg---acaactatcacctcaaagaaacaataatatttcaaagtcacatttcacat-aaagatggacctc 14973811  T
Q  200 tatccacatcacgacattcatcatattaaac 230  Q
    || |||||||| || ||||||||||||||||    
T  14973810 taaccacatcatgatattcatcatattaaac 14973780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 100 - 230
Target Start/End: Complemental strand, 15403382 - 15403256
Alignment:
Q  100 catcaagttaaaatcaccaaagaatcatcatcagcaacaacaatcacctcaaagaaacaacaaagtttcaaagttacaattcacataaaagacggacaac 199  Q
    |||||| |||||||||| ||||||||||||||    ||||| |||||||||||||||||| ||  ||||||||| ||| ||||||| ||||| ||||  |    
T  15403382 catcaaattaaaatcacaaaagaatcatcatcg---acaactatcacctcaaagaaacaataatatttcaaagtcacatttcacat-aaagatggacctc 15403287  T
Q  200 tatccacatcacgacattcatcatattaaac 230  Q
    || |||||||| || ||||||||||||||||    
T  15403286 taaccacatcatgatattcatcatattaaac 15403256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 195 - 337
Target Start/End: Original strand, 13488251 - 13488394
Alignment:
Q  195 acaactatccacatcacgacattcatcatattaaacatgcaatcaacattgattcattcttattctatcatattatcatgaacataaac-caattgcaag 293  Q
    ||||||| |||||||| ||||||||||| |||| | || ||| || |  |||||||||||||||||||| ||| || ||||  | |||  || |||||||    
T  13488251 acaactaaccacatcatgacattcatcacattataaatccaaccatccatgattcattcttattctatcctatcattatgattacaaagtcatttgcaag 13488350  T
Q  294 ttatccggtcataaaatcacattttgacaaagtttgtctatttt 337  Q
    ||||||| ||||| || | ||||||||||||||| |||||||||    
T  13488351 ttatccgatcatagaacctcattttgacaaagttcgtctatttt 13488394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 183 - 276
Target Start/End: Complemental strand, 11775143 - 11775050
Alignment:
Q  183 cataaaagacggacaactatccacatcacgacattcatcatattaaacatgcaatcaacattgattcattcttattctatcatattatcatgaa 276  Q
    ||||||| |||||||| || |||||||||||||||||||| ||||||||  |||  | |||| ||||||||| ||||||||||| || ||||||    
T  11775143 cataaaatacggacaattaaccacatcacgacattcatcaaattaaacaaccaaatatcattaattcattctcattctatcatactaacatgaa 11775050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 238 - 337
Target Start/End: Complemental strand, 14266982 - 14266882
Alignment:
Q  238 caacattgattcattcttattctatcatattatcatgaa-cataaaccaattgcaagttatccggtcataaaatcacattttgacaaagtttgtctattt 336  Q
    |||||||||||||||| |||| |||||||||||||||||  | ||||||||  |||| |||  | |||||||| | ||||||||||||||| ||||||||    
T  14266982 caacattgattcattcgtattttatcatattatcatgaataaaaaaccaatcacaaggtataagatcataaaagctcattttgacaaagttcgtctattt 14266883  T
Q  337 t 337  Q
    |    
T  14266882 t 14266882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 191 - 276
Target Start/End: Original strand, 16093850 - 16093935
Alignment:
Q  191 acggacaactatccacatcacgacattcatcatattaaacatgcaatcaacattgattcattcttattctatcatattatcatgaa 276  Q
    |||||||||||| |  || | ||||||||||||||||||||| ||||||  ||| ||| |||| ||||||||||||||| ||||||    
T  16093850 acggacaactattcgtataatgacattcatcatattaaacatccaatcatgattaattaattcctattctatcatattagcatgaa 16093935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 287 - 337
Target Start/End: Complemental strand, 17492424 - 17492374
Alignment:
Q  287 ttgcaagttatccggtcataaaatcacattttgacaaagtttgtctatttt 337  Q
    |||||||||||||| |||||||||  ||||||||||||||| |||||||||    
T  17492424 ttgcaagttatccgatcataaaatttcattttgacaaagttcgtctatttt 17492374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 287 - 337
Target Start/End: Original strand, 17560790 - 17560840
Alignment:
Q  287 ttgcaagttatccggtcataaaatcacattttgacaaagtttgtctatttt 337  Q
    |||||||||||||| |||||||||  ||||||||||||||| |||||||||    
T  17560790 ttgcaagttatccgatcataaaatttcattttgacaaagttcgtctatttt 17560840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 183 - 276
Target Start/End: Complemental strand, 15010261 - 15010168
Alignment:
Q  183 cataaaagacggacaactatccacatcacgacattcatcatattaaacatgcaatcaacattgattcattcttattctatcatattatcatgaa 276  Q
    ||||||||||||||||  | | |||||||||||| ||||||||||||||  | |||| |||||||||||  | |||| ||||||| | ||||||    
T  15010261 cataaaagacggacaaacaacaacatcacgacatccatcatattaaacaccccatcatcattgattcatcatcattcaatcatataaacatgaa 15010168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 386 - 481
Target Start/End: Complemental strand, 11774939 - 11774844
Alignment:
Q  386 gttcaaataccccaaccaagtacatacgctactcacatatgatcacagtagcatatgcatgtaaacatcataggtcactttcgattaattccaaaa 481  Q
    |||||||| || ||||||||||||||| | | ||||||||||   ||||||||||| ||| ||   |||||||| || || |||||||||||||||    
T  11774939 gttcaaatccctcaaccaagtacatacacaattcacatatgagtgcagtagcatatacatatacgtatcataggccaattccgattaattccaaaa 11774844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 145 - 231
Target Start/End: Complemental strand, 20911701 - 20911616
Alignment:
Q  145 acctcaaagaaacaacaaagtttcaaagttacaattcacataaaagacggacaactatccacatcacgacattcatcatattaaaca 231  Q
    ||||||| ||||| | ||||||||||| | ||| |||||||||| |||||||| ||| ||||| |  ||| ||||||||||||||||    
T  20911701 acctcaaggaaacgataaagtttcaaattcacatttcacataaa-gacggacatctagccacaacgtgaccttcatcatattaaaca 20911616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 73; Significance: 4e-33; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 126 - 365
Target Start/End: Complemental strand, 31433 - 31193
Alignment:
Q  126 atcatcagcaacaacaatcacctcaaagaaacaacaaagtttcaaagttacaattcacataaaagacggacaactatccacatcacgacattcatcatat 225  Q
    ||||||| |||||||  ||||||||| ||||||||||||||||||| | ||| ||  ||||| |||| ||  || |||||||| | |||||||| |||||    
T  31433 atcatcatcaacaactttcacctcaatgaaacaacaaagtttcaaaatcacattttgcataatagacagaatacgatccacataatgacattcaacatat 31334  T
Q  226 taaacatgcaatcaacattgattcattcttattctatcatattatcatgaacataaa-ccaattgcaagttatccggtcataaaatcacattttgacaaa 324  Q
    || |||  |||||| |||||||||||||||| |||||||||| ||||| | || ||| ||||||||||||||||| || |||||| | |||||  |||||    
T  31333 tagacacccaatcatcattgattcattcttactctatcatatcatcataagcacaaagccaattgcaagttatccagttataaaacctcatttcaacaaa 31234  T
Q  325 gtttgtctatttttactactttctacattttccaagtaatt 365  Q
    |||  |||||||| || ||||||   |||||| ||||||||    
T  31233 gttcatctattttcacaactttcattattttctaagtaatt 31193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0417 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: scaffold0417
Description:

Target: scaffold0417; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 122 - 337
Target Start/End: Original strand, 2557 - 2772
Alignment:
Q  122 aatcatcatcagcaacaacaatcacctcaaagaaacaacaaagtttcaaagttacaattcacataaaagacggacaactatccacatcacgacattcatc 221  Q
    ||||||||| |  |||||| |||||||||| ||||||| |||||||||   | ||| ||||||||||| ||| ||| ||| |||||||| ||||||||||    
T  2557 aatcatcattattaacaactatcacctcaaggaaacaataaagtttcacgatcacatttcacataaaatacgaacatctaaccacatcatgacattcatc 2656  T
Q  222 atattaaacatgcaatcaacattgattcattcttattctatcatattatcatgaacataaa-ccaattgcaagttatccggtcataaaatcacattttga 320  Q
    ||||||||||   ||||| |||||||||||||||| |||||||||| |||||||| | ||| ||||||  ||||||| ||  |||| || | || |||||    
T  2657 atattaaacaccaaatcatcattgattcattctta-tctatcatatcatcatgaatacaaagccaattaaaagttattcgaacatacaacctcaatttga 2755  T
Q  321 caaagtttgtctatttt 337  Q
    ||||||| |||||||||    
T  2756 caaagttcgtctatttt 2772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 6e-29; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 129 - 258
Target Start/End: Complemental strand, 38278122 - 38277993
Alignment:
Q  129 atcagcaacaacaatcacctcaaagaaacaacaaagtttcaaagttacaattcacataaaagacggacaactatccacatcacgacattcatcatattaa 228  Q
    |||| ||| |||||||||||||||||||| |||||||||| || |  || ||||  ||||||| ||||||||||| ||||||||||||||||| ||||||    
T  38278122 atcatcaataacaatcacctcaaagaaacgacaaagtttcgaaatcgcatttcatgtaaaagatggacaactatctacatcacgacattcatcgtattaa 38278023  T
Q  229 acatgcaatcaacattgattcattcttatt 258  Q
     ||| |||||| ||||||||||||||||||    
T  38278022 gcattcaatcatcattgattcattcttatt 38277993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 151 - 270
Target Start/End: Complemental strand, 9637346 - 9637227
Alignment:
Q  151 aagaaacaacaaagtttcaaagttacaattcacataaaagacggacaactatccacatcacgacattcatcatattaaacatgcaatcaacattgattca 250  Q
    ||||||||| || |||||||| | ||| ||  ||||||| ||||||||||| |||||||| ||||||||||||||| ||||| |||||| ||||||||||    
T  9637346 aagaaacaataacgtttcaaaatcacattttgcataaaaaacggacaactaaccacatcatgacattcatcatatttaacatccaatcatcattgattca 9637247  T
Q  251 ttcttattctatcatattat 270  Q
    |||||||| |||| ||||||    
T  9637246 ttcttattatatcctattat 9637227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 342 - 460
Target Start/End: Original strand, 12805100 - 12805219
Alignment:
Q  342 actttctacattttccaagtaattt-gacaaaacaatgtaaacgtgttcaaataccccaaccaagtacatacgctactcacatatgatcacagtagcata 440  Q
    |||| |||||||||| || || ||| |||||||||| ||||||||| | ||| ||| |||||||| | |||| ||||||||||||||||||| |||| ||    
T  12805100 acttcctacattttctaaatattttcgacaaaacaaggtaaacgtgattaaacacctcaaccaagcatatacactactcacatatgatcacaatagctta 12805199  T
Q  441 tgcatgtaaacatcataggt 460  Q
    ||||| ||  ||||||||||    
T  12805200 tgcatataggcatcataggt 12805219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 145 - 256
Target Start/End: Original strand, 17385767 - 17385878
Alignment:
Q  145 acctcaaagaaacaacaaagtttcaaagttacaattcacataaaagacggacaactatccacatcacgacattcatcatattaaacatgcaatcaacatt 244  Q
    ||||||||||||||| || |||||| | | | | ||  ||||||||||||| ||||| |||||||| |||| |||||||||||||||  |||  | ||||    
T  17385767 acctcaaagaaacaataacgtttcacaatcatattttgcataaaagacggaaaactaaccacatcatgacaatcatcatattaaacacccaactatcatt 17385866  T
Q  245 gattcattctta 256  Q
    ||||||||||||    
T  17385867 gattcattctta 17385878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 287 - 337
Target Start/End: Complemental strand, 14306010 - 14305960
Alignment:
Q  287 ttgcaagttatccggtcataaaatcacattttgacaaagtttgtctatttt 337  Q
    |||||||||||||| ||||||||||  ||||||||||||||||||||||||    
T  14306010 ttgcaagttatccgatcataaaatcttattttgacaaagtttgtctatttt 14305960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 161 - 253
Target Start/End: Complemental strand, 2547692 - 2547600
Alignment:
Q  161 aaagtttcaaagttacaattcacataaaagacggacaactatccacatcacgacattcatcatattaaacatgcaatcaacattgattcattc 253  Q
    ||||||||| | | ||| || |||||||||||||  ||| | ||||| || ||||||||||||||||||||  |||||| |||||||||||||    
T  2547692 aaagtttcacaatcacattttacataaaagacggggaacaacccacaccaagacattcatcatattaaacactcaatcatcattgattcattc 2547600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 187 - 263
Target Start/End: Original strand, 12794318 - 12794394
Alignment:
Q  187 aaagacggacaactatccacatcacgacattcatcatattaaacatgcaatcaacattgattcattcttattctatc 263  Q
    |||||||||||| |||||| |||| ||||||||||||||| ||||  ||| |  ||| ||||| |||||||||||||    
T  12794318 aaagacggacaattatccaaatcatgacattcatcatatttaacacccaaacttcatcgattcgttcttattctatc 12794394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 89 - 132
Target Start/End: Complemental strand, 25486716 - 25486672
Alignment:
Q  89 catcatcaatccatcaagttaaaatcacc-aaagaatcatcatca 132  Q
    |||||||||| |||||||||||||||||| |||||||||||||||    
T  25486716 catcatcaattcatcaagttaaaatcaccaaaagaatcatcatca 25486672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 175 - 298
Target Start/End: Complemental strand, 29650625 - 29650502
Alignment:
Q  175 acaattcacataaaagacggacaactatccacatcacgacattcatcatattaaacatgcaatcaa-cattgattcattcttattctatcatattatcat 273  Q
    ||||||||||||| ||||||||||  | |||||||| ||||  || ||||||| |||| |  |||  ||||||||||||||||||  ||||| |||||||    
T  29650625 acaattcacataatagacggacaatcacccacatcatgacacccaacatattatacatccg-tcactcattgattcattcttatttcatcatgttatcat 29650527  T
Q  274 gaacataaaccaattgcaagttatc 298  Q
    ||  |||| ||| ||||||||||||    
T  29650526 gagtataagccatttgcaagttatc 29650502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 239 - 297
Target Start/End: Complemental strand, 10711228 - 10711169
Alignment:
Q  239 aacattgattcattcttattctatcatattatcatgaacat-aaaccaattgcaagttat 297  Q
    ||||||||||| ||||||||  ||||| |||||||||| || ||||||||||||||||||    
T  10711228 aacattgattccttcttatttcatcatgttatcatgaatataaaaccaattgcaagttat 10711169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 241 - 340
Target Start/End: Original strand, 14262851 - 14262950
Alignment:
Q  241 cattgattcattcttattctatcatattatcatgaacataaaccaattgcaagttatccggtcataaaatcacattttgacaaagtttgtctatttttac 340  Q
    |||| ||||||| |||||  |||||||||||||||| ||||  || ||| ||||||||   ||||||   | ||||||||||||||| ||||||||||||    
T  14262851 catttattcatttttatttcatcatattatcatgaatataagtcatttgtaagttatcaaatcataattcctcattttgacaaagttcgtctatttttac 14262950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 239 - 281
Target Start/End: Original strand, 2279290 - 2279332
Alignment:
Q  239 aacattgattcattcttattctatcatattatcatgaacataa 281  Q
    |||||||||| |||||||| |||||||||||||||||| ||||    
T  2279290 aacattgattaattcttatcctatcatattatcatgaatataa 2279332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 287 - 337
Target Start/End: Original strand, 8900452 - 8900502
Alignment:
Q  287 ttgcaagttatccggtcataaaatcacattttgacaaagtttgtctatttt 337  Q
    ||||||||||| || ||| |||| | |||||||||||||||||||||||||    
T  8900452 ttgcaagttattcgatcacaaaacctcattttgacaaagtttgtctatttt 8900502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 161 - 251
Target Start/End: Complemental strand, 16220060 - 16219970
Alignment:
Q  161 aaagtttcaaagttacaattcacataaaagacggacaactatccacatcacgacattcatcatattaaacatgcaatcaacattgattcat 251  Q
    ||||||||||| | ||| ||||  ||||||||| ||| |||||||||| | || ||||||||||||| |||  |||||| |||| ||||||    
T  16220060 aaagtttcaaattcacatttcaactaaaagacgaacatctatccacattatgatattcatcatattatacaatcaatcatcatttattcat 16219970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 100 - 132
Target Start/End: Original strand, 5346209 - 5346241
Alignment:
Q  100 catcaagttaaaatcaccaaagaatcatcatca 132  Q
    ||||||||||||||||||||||||||| |||||    
T  5346209 catcaagttaaaatcaccaaagaatcaacatca 5346241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0959 (Bit Score: 61; Significance: 6e-26; HSPs: 1)
Name: scaffold0959
Description:

Target: scaffold0959; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 186 - 337
Target Start/End: Original strand, 740 - 892
Alignment:
Q  186 aaaagacggacaactatccacatcacgacattcatcatattaaacatgcaatcaacattgattcattcttattctatcatattatcatgaacataaa-cc 284  Q
    ||||||||||||| ||||||||||| || ||||| || ||||||||  || ||| | || ||||||  ||| |||||||||  |||||||| ||||| ||    
T  740 aaaagacggacaattatccacatcatgaaattcaccaaattaaacacccattcatcgtttattcatatttactctatcataaaatcatgaatataaagcc 839  T
Q  285 aattgcaagttatccggtcataaaatcacattttgacaaagtttgtctatttt 337  Q
    ||||||||||||||||||||||||||| |||||  |||||||| |||||||||    
T  840 aattgcaagttatccggtcataaaatctcatttcaacaaagttcgtctatttt 892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 246 - 334
Target Start/End: Complemental strand, 16431 - 16342
Alignment:
Q  246 attcattcttattctatcatattatcatgaacat-aaaccaattgcaagttatccggtcataaaatcacattttgacaaagtttgtctat 334  Q
    |||||||||||||||||||||| ||||||||||| |||| |||||||||| |||||||||||||  |  | |||||| ||||||||||||    
T  16431 attcattcttattctatcatatcatcatgaacataaaacaaattgcaagtcatccggtcataaagacttaatttgacgaagtttgtctat 16342  T

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Target: scaffold0135 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 134 - 282
Target Start/End: Original strand, 31412 - 31558
Alignment:
Q  134 caacaacaatcacctcaaagaaacaacaaagtttcaaagttacaattcacataaaagacggacaactatccacatcacgacattcatcatattaaacatg 233  Q
    |||||||||||| ||||| ||| |||||||||| |||| | ||| ||  |||||||||||||||| |||| |||||| ||||||||||| |||||||       
T  31412 caacaacaatcaactcaa-gaaccaacaaagttccaaaatcacatttg-cataaaagacggacaattatctacatcatgacattcatcaaattaaacgac 31509  T
Q  234 caatcaacattgattcattcttattctatcatattatcatgaacataaa 282  Q
    || ||| | | |||||||||| ||| |||||||| |||||||| |||||    
T  31510 cactcatcgtggattcattctaattttatcatatcatcatgaatataaa 31558  T

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Target: scaffold0115 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 244 - 337
Target Start/End: Complemental strand, 40714 - 40620
Alignment:
Q  244 tgattcattcttattctatcatattatcatgaacataaac-caattgcaagttatccggtcataaaatcacattttgacaaagtttgtctatttt 337  Q
    ||||||||||||||| |||| ||| |||||||| | |||| || || ||| |||| ||||||||||| | |||||||||||||||||||||||||    
T  40714 tgattcattcttattatatcctatcatcatgaatacaaactcatttacaaattatacggtcataaaagctcattttgacaaagtttgtctatttt 40620  T

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Target: scaffold0115; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 126 - 262
Target Start/End: Complemental strand, 40853 - 40717
Alignment:
Q  126 atcatcagcaacaacaatcacctcaaagaaacaacaaagtttcaaagttacaattcacataaaagacggacaactatccacatcacgacattcatcatat 225  Q
    ||||||| ||||||  |||||||||| ||| ||| | | ||| ||||| ||| ||  ||||||||||||||||||| |||| |||  | ||| |||||||    
T  40853 atcatcatcaacaattatcacctcaaggaagcaatacattttaaaagtcacattttgcataaaagacggacaactaaccacgtcataatatttatcatat 40754  T
Q  226 taaacatgcaatcaacattgattcattcttattctat 262  Q
    ||||||  |||||| |||| ||||||||||| |||||    
T  40753 taaacacacaatcatcattcattcattcttaatctat 40717  T

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Target: scaffold0018 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 126 - 333
Target Start/End: Original strand, 53506 - 53711
Alignment:
Q  126 atcatcagcaacaacaatcacctcaaagaaacaacaaagtttcaaagttacaattcacataaaagacggacaactatccacatcacgacattcatcatat 225  Q
    ||||||| |||||||||||| || | ||||   ||||||||||||| | ||| ||  |||| || |||  |||||| |||||||||||||||||| | ||    
T  53506 atcatcatcaacaacaatcaacttagagaac--acaaagtttcaaaatcacatttttcatagaatacgaccaactaaccacatcacgacattcataaaat 53603  T
Q  226 taaacatgcaatcaacattgattcattcttattctatcatattatcatgaacataaa-ccaattgcaagttatccggtcataaaatcacattttgacaaa 324  Q
     |||||  ||||   | |||||||||||||||| |||| | | |||||||||| ||| |||||| |||||||| ||||||  ||| |||| |||||||||    
T  53604 aaaacacccaattgtccttgattcattcttattttatcttgtcatcatgaacaaaaagccaattacaagttattcggtcaagaaaccaca-tttgacaaa 53702  T
Q  325 gtttgtcta 333  Q
    ||| |||||    
T  53703 gttcgtcta 53711  T

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Target: scaffold0018; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 126 - 333
Target Start/End: Original strand, 57458 - 57663
Alignment:
Q  126 atcatcagcaacaacaatcacctcaaagaaacaacaaagtttcaaagttacaattcacataaaagacggacaactatccacatcacgacattcatcatat 225  Q
    ||||||| |||||||||||| || | ||||   ||||||||||||| | ||| ||  |||| || |||  |||||| |||||||||||||||||| | ||    
T  57458 atcatcatcaacaacaatcaacttagagaac--acaaagtttcaaaatcacatttttcatagaatacgaccaactaaccacatcacgacattcataaaat 57555  T
Q  226 taaacatgcaatcaacattgattcattcttattctatcatattatcatgaacataaa-ccaattgcaagttatccggtcataaaatcacattttgacaaa 324  Q
     |||||  ||||   | |||||||||||||||| |||| | | |||||||||| ||| |||||| |||||||| ||||||  ||| |||| |||||||||    
T  57556 aaaacacccaattgtccttgattcattcttattttatcttgtcatcatgaacaaaaagccaattacaagttattcggtcaagaaaccaca-tttgacaaa 57654  T
Q  325 gtttgtcta 333  Q
    ||| |||||    
T  57655 gttcgtcta 57663  T

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Target: scaffold0018; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 368 - 445
Target Start/End: Original strand, 53717 - 53794
Alignment:
Q  368 acaaaacaatgtaaacgtgttcaaataccccaaccaagtacatacgctactcacatatgatcacagtagcatatgcat 445  Q
    ||||||||| | ||||||| ||||| ||| |||||||| |||||| ||||| ||||||||||||| |||| |||||||    
T  53717 acaaaacaagggaaacgtgatcaaacacctcaaccaagcacatacactactgacatatgatcacaatagcttatgcat 53794  T

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Target: scaffold0018; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 368 - 445
Target Start/End: Original strand, 57669 - 57746
Alignment:
Q  368 acaaaacaatgtaaacgtgttcaaataccccaaccaagtacatacgctactcacatatgatcacagtagcatatgcat 445  Q
    ||||||||| | ||||||| ||||| ||| |||||||| |||||| ||||| ||||||||||||| |||| |||||||    
T  57669 acaaaacaagggaaacgtgatcaaacacctcaaccaagcacatacactactgacatatgatcacaatagcttatgcat 57746  T

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Target: scaffold0171 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 241 - 337
Target Start/End: Original strand, 3664 - 3759
Alignment:
Q  241 cattgattcattcttattctatcatattatcatgaacataaaccaattgcaagttatccggtcataaaatcacattttgacaaagtttgtctatttt 337  Q
    ||||||||||||||||||  |||||||||||||||| | || ||| ||||||||||||  ||||| ||| | |||||||| |||||| |||||||||    
T  3664 cattgattcattcttatttcatcatattatcatgaatacaacccatttgcaagttatcaagtcat-aaacctcattttgataaagttcgtctatttt 3759  T

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Target: scaffold0053 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 107 - 231
Target Start/End: Complemental strand, 76018 - 75897
Alignment:
Q  107 ttaaaatcaccaaagaatcatcatcagcaacaacaatcacctcaaagaaacaacaaagtttcaaagttacaattcacataaaagacggacaactatccac 206  Q
    |||||||||||||||||| ||||||||   |||| ||||||||||||||| || ||  | |||||||  || ||||  |||||||||||||||||||||     
T  76018 ttaaaatcaccaaagaattatcatcag---caactatcacctcaaagaaataataatatctcaaagtcgcatttcatctaaaagacggacaactatccaa 75922  T
Q  207 atcacgacattcatcatattaaaca 231  Q
     | | || ||||||||| |||||||    
T  75921 tttatgatattcatcatgttaaaca 75897  T

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Target: scaffold0040 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 144 - 252
Target Start/End: Complemental strand, 48550 - 48442
Alignment:
Q  144 cacctcaaagaaacaacaaagtttcaaagttacaattcacataaaagacggacaactatccacatcacgacattcatcatattaaacatgcaatcaacat 243  Q
    ||||| |||||||| | ||||||||||| | ||| ||||  ||||||| ||||| |||||||| | | || |||||||||||||||||  |||||| |||    
T  48550 caccttaaagaaacgataaagtttcaaattcacatttcaactaaaagagggacatctatccacgttatgatattcatcatattaaacacccaatcatcat 48451  T
Q  244 tgattcatt 252  Q
      |||||||    
T  48450 caattcatt 48442  T

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Target: scaffold1924 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold1924
Description:

Target: scaffold1924; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 287 - 337
Target Start/End: Complemental strand, 361 - 311
Alignment:
Q  287 ttgcaagttatccggtcataaaatcacattttgacaaagtttgtctatttt 337  Q
    ||||||||||| || |||||||| | ||||||||||||||| |||||||||    
T  361 ttgcaagttattcgatcataaaacctcattttgacaaagttcgtctatttt 311  T

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Target: scaffold0333 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0333
Description:

Target: scaffold0333; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 185 - 227
Target Start/End: Complemental strand, 1217 - 1175
Alignment:
Q  185 taaaagacggacaactatccacatcacgacattcatcatatta 227  Q
    |||||||||| ||||||||||||||| |||||| |||||||||    
T  1217 taaaagacgggcaactatccacatcatgacattaatcatatta 1175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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