View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0669_low_94 (Length: 251)

Name: NF0669_low_94
Description: NF0669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0669_low_94
NF0669_low_94
[»] chr1 (8 HSPs)
chr1 (12-139)||(47563198-47563326)
chr1 (195-236)||(13970542-13970583)
chr1 (151-192)||(42098752-42098793)
chr1 (160-192)||(17240717-17240749)
chr1 (160-192)||(17242125-17242157)
chr1 (160-192)||(21747943-21747975)
chr1 (159-192)||(42097325-42097358)
chr1 (156-192)||(9008757-9008792)
[»] chr8 (6 HSPs)
chr8 (195-236)||(38974345-38974386)
chr8 (195-236)||(39005443-39005484)
chr8 (160-192)||(3923630-3923662)
chr8 (160-192)||(9755684-9755716)
chr8 (160-188)||(14101115-14101143)
chr8 (160-188)||(40462270-40462298)
[»] chr4 (15 HSPs)
chr4 (195-236)||(5169802-5169843)
chr4 (159-198)||(5169312-5169351)
chr4 (159-192)||(2753087-2753120)
chr4 (159-192)||(17288630-17288663)
chr4 (159-192)||(23506405-23506438)
chr4 (160-192)||(16314223-16314255)
chr4 (160-192)||(17288778-17288810)
chr4 (160-192)||(20673565-20673597)
chr4 (160-192)||(20674834-20674866)
chr4 (160-192)||(23504895-23504927)
chr4 (151-190)||(1997082-1997120)
chr4 (159-190)||(5170409-5170440)
chr4 (160-191)||(51568809-51568840)
chr4 (160-188)||(24685024-24685052)
chr4 (160-192)||(47863692-47863724)
[»] chr7 (7 HSPs)
chr7 (154-192)||(5769328-5769366)
chr7 (159-192)||(47578607-47578640)
chr7 (160-192)||(5737177-5737209)
chr7 (160-191)||(12628033-12628064)
chr7 (160-190)||(12629453-12629483)
chr7 (160-190)||(21261980-21262010)
chr7 (160-192)||(23525581-23525613)
[»] chr5 (1 HSPs)
chr5 (149-195)||(32953083-32953129)
[»] chr3 (11 HSPs)
chr3 (195-236)||(39606177-39606218)
chr3 (150-191)||(15438461-15438501)
chr3 (155-192)||(36438795-36438832)
chr3 (151-191)||(37086764-37086803)
chr3 (160-198)||(39606653-39606691)
chr3 (160-192)||(11150271-11150303)
chr3 (160-192)||(15439701-15439733)
chr3 (160-192)||(30034614-30034646)
chr3 (160-192)||(34799865-34799897)
chr3 (160-192)||(36437214-36437246)
chr3 (160-192)||(42278477-42278509)
[»] scaffold0071 (2 HSPs)
scaffold0071 (150-191)||(23690-23730)
scaffold0071 (160-192)||(22458-22490)
[»] scaffold0049 (1 HSPs)
scaffold0049 (159-192)||(385-418)
[»] chr6 (5 HSPs)
chr6 (160-190)||(21383844-21383874)
chr6 (160-190)||(25482148-25482178)
chr6 (160-192)||(5858898-5858930)
chr6 (160-192)||(32146114-32146146)
chr6 (160-192)||(35223132-35223164)
[»] chr2 (1 HSPs)
chr2 (159-193)||(30776465-30776499)


Alignment Details
Target: chr1 (Bit Score: 105; Significance: 1e-52; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 12 - 139
Target Start/End: Original strand, 47563198 - 47563326
Alignment:
Q  12 tatactaataaagatgagtttgtaccatacattgacaaatta-tgggttttgtcgttttgatacaattgctttcttaagtaataaattaatgatcatttt 110  Q
    |||||||||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |||||    
T  47563198 tatactaataaagatgagtttgtaccatacatcgacaaattaatgggttttatcgttttgatacaattgctttcttaagtaataaattaatgataatttt 47563297  T
Q  111 gcgaaccaaataactatttgtaagccctt 139  Q
    | |||||||||||||||||||||||||||    
T  47563298 gtgaaccaaataactatttgtaagccctt 47563326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 195 - 236
Target Start/End: Complemental strand, 13970583 - 13970542
Alignment:
Q  195 gtctcaaaataggtctgaaaattctaacccataaatccgaag 236  Q
    |||||||||||||||| |||||||||| ||||||||||||||    
T  13970583 gtctcaaaataggtcttaaaattctaatccataaatccgaag 13970542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 192
Target Start/End: Complemental strand, 42098793 - 42098752
Alignment:
Q  151 aaaataaatgggttaataggcttttacccccctgccatttgg 192  Q
    ||||| || |||||||||||||||||||||||||||||||||    
T  42098793 aaaattaaagggttaataggcttttacccccctgccatttgg 42098752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 192
Target Start/End: Original strand, 17240717 - 17240749
Alignment:
Q  160 gggttaataggcttttacccccctgccatttgg 192  Q
    |||||||||||||||||||||||||||||||||    
T  17240717 gggttaataggcttttacccccctgccatttgg 17240749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 192
Target Start/End: Complemental strand, 17242157 - 17242125
Alignment:
Q  160 gggttaataggcttttacccccctgccatttgg 192  Q
    |||||||||||||||||||||||||||||||||    
T  17242157 gggttaataggcttttacccccctgccatttgg 17242125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 192
Target Start/End: Original strand, 21747943 - 21747975
Alignment:
Q  160 gggttaataggcttttacccccctgccatttgg 192  Q
    |||||||||||||||||||||||||||||||||    
T  21747943 gggttaataggcttttacccccctgccatttgg 21747975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 192
Target Start/End: Original strand, 42097325 - 42097358
Alignment:
Q  159 tgggttaataggcttttacccccctgccatttgg 192  Q
    |||||||||||| |||||||||||||||||||||    
T  42097325 tgggttaataggtttttacccccctgccatttgg 42097358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 192
Target Start/End: Original strand, 9008757 - 9008792
Alignment:
Q  156 aaatgggttaataggcttttacccccctgccatttgg 192  Q
    ||||||||||||||||||||| |||||||||||||||    
T  9008757 aaatgggttaataggctttta-ccccctgccatttgg 9008792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 195 - 236
Target Start/End: Complemental strand, 38974386 - 38974345
Alignment:
Q  195 gtctcaaaataggtctgaaaattctaacccataaatccgaag 236  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  38974386 gtctcaaaataggtctgaaaattctaacccataaatccgaag 38974345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 195 - 236
Target Start/End: Complemental strand, 39005484 - 39005443
Alignment:
Q  195 gtctcaaaataggtctgaaaattctaacccataaatccgaag 236  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  39005484 gtctcaaaataggtctgaaaattctaacccataaatccgaag 39005443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 192
Target Start/End: Complemental strand, 3923662 - 3923630
Alignment:
Q  160 gggttaataggcttttacccccctgccatttgg 192  Q
    |||||||||||||||||||||||| ||||||||    
T  3923662 gggttaataggcttttacccccctaccatttgg 3923630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 192
Target Start/End: Original strand, 9755684 - 9755716
Alignment:
Q  160 gggttaataggcttttacccccctgccatttgg 192  Q
    |||||||||| ||||||||||||||||||||||    
T  9755684 gggttaatagacttttacccccctgccatttgg 9755716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 188
Target Start/End: Complemental strand, 14101143 - 14101115
Alignment:
Q  160 gggttaataggcttttacccccctgccat 188  Q
    |||||||||||||||||||||||||||||    
T  14101143 gggttaataggcttttacccccctgccat 14101115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 188
Target Start/End: Original strand, 40462270 - 40462298
Alignment:
Q  160 gggttaataggcttttacccccctgccat 188  Q
    |||||||||||||||||||||||||||||    
T  40462270 gggttaataggcttttacccccctgccat 40462298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 195 - 236
Target Start/End: Original strand, 5169802 - 5169843
Alignment:
Q  195 gtctcaaaataggtctgaaaattctaacccataaatccgaag 236  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  5169802 gtctcaaaataggtctgaaaattctaacccataaatccgaag 5169843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 198
Target Start/End: Original strand, 5169312 - 5169351
Alignment:
Q  159 tgggttaataggcttttacccccctgccatttggacgtct 198  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  5169312 tgggttaataggcttttacccccctgccatttgggcgtct 5169351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 159 - 192
Target Start/End: Complemental strand, 2753120 - 2753087
Alignment:
Q  159 tgggttaataggcttttacccccctgccatttgg 192  Q
    ||||||||||||||||||||||||||||||||||    
T  2753120 tgggttaataggcttttacccccctgccatttgg 2753087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 159 - 192
Target Start/End: Original strand, 17288630 - 17288663
Alignment:
Q  159 tgggttaataggcttttacccccctgccatttgg 192  Q
    ||||||||||||||||||||||||||||||||||    
T  17288630 tgggttaataggcttttacccccctgccatttgg 17288663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 159 - 192
Target Start/End: Complemental strand, 23506438 - 23506405
Alignment:
Q  159 tgggttaataggcttttacccccctgccatttgg 192  Q
    ||||||||||||||||||||||||||||||||||    
T  23506438 tgggttaataggcttttacccccctgccatttgg 23506405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 192
Target Start/End: Complemental strand, 16314255 - 16314223
Alignment:
Q  160 gggttaataggcttttacccccctgccatttgg 192  Q
    |||||||||||||||||||||||||||||||||    
T  16314255 gggttaataggcttttacccccctgccatttgg 16314223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 192
Target Start/End: Complemental strand, 17288810 - 17288778
Alignment:
Q  160 gggttaataggcttttacccccctgccatttgg 192  Q
    |||||||||||||||||||||||||||||||||    
T  17288810 gggttaataggcttttacccccctgccatttgg 17288778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 192
Target Start/End: Original strand, 20673565 - 20673597
Alignment:
Q  160 gggttaataggcttttacccccctgccatttgg 192  Q
    |||||||||||||||||||||||||||||||||    
T  20673565 gggttaataggcttttacccccctgccatttgg 20673597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 192
Target Start/End: Complemental strand, 20674866 - 20674834
Alignment:
Q  160 gggttaataggcttttacccccctgccatttgg 192  Q
    |||||||||||||||||||||||||||||||||    
T  20674866 gggttaataggcttttacccccctgccatttgg 20674834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 192
Target Start/End: Original strand, 23504895 - 23504927
Alignment:
Q  160 gggttaataggcttttacccccctgccatttgg 192  Q
    |||||||||||||||||||||||||||||||||    
T  23504895 gggttaataggcttttacccccctgccatttgg 23504927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 190
Target Start/End: Complemental strand, 1997120 - 1997082
Alignment:
Q  151 aaaataaatgggttaataggcttttacccccctgccattt 190  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  1997120 aaaataaa-gggttaataggcttttacccccctgccattt 1997082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 190
Target Start/End: Complemental strand, 5170440 - 5170409
Alignment:
Q  159 tgggttaataggcttttacccccctgccattt 190  Q
    ||||||||||||||||||||||||||||||||    
T  5170440 tgggttaataggcttttacccccctgccattt 5170409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 191
Target Start/End: Original strand, 51568809 - 51568840
Alignment:
Q  160 gggttaataggcttttacccccctgccatttg 191  Q
    ||||||||||||||||||||||||||||||||    
T  51568809 gggttaataggcttttacccccctgccatttg 51568840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 188
Target Start/End: Original strand, 24685024 - 24685052
Alignment:
Q  160 gggttaataggcttttacccccctgccat 188  Q
    |||||||||||||||||||||||||||||    
T  24685024 gggttaataggcttttacccccctgccat 24685052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 192
Target Start/End: Complemental strand, 47863724 - 47863692
Alignment:
Q  160 gggttaataggcttttacccccctgccatttgg 192  Q
    ||||||||||||||||||| |||||||||||||    
T  47863724 gggttaataggcttttacctccctgccatttgg 47863692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 154 - 192
Target Start/End: Complemental strand, 5769366 - 5769328
Alignment:
Q  154 ataaatgggttaataggcttttacccccctgccatttgg 192  Q
    |||||||||||||||||||||||||||||||||||||||    
T  5769366 ataaatgggttaataggcttttacccccctgccatttgg 5769328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 159 - 192
Target Start/End: Complemental strand, 47578640 - 47578607
Alignment:
Q  159 tgggttaataggcttttacccccctgccatttgg 192  Q
    ||||||||||||||||||||||||||||||||||    
T  47578640 tgggttaataggcttttacccccctgccatttgg 47578607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 192
Target Start/End: Original strand, 5737177 - 5737209
Alignment:
Q  160 gggttaataggcttttacccccctgccatttgg 192  Q
    |||||||||||||||||||||||||||||||||    
T  5737177 gggttaataggcttttacccccctgccatttgg 5737209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 191
Target Start/End: Original strand, 12628033 - 12628064
Alignment:
Q  160 gggttaataggcttttacccccctgccatttg 191  Q
    ||||||||||||||||||||||||||||||||    
T  12628033 gggttaataggcttttacccccctgccatttg 12628064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 190
Target Start/End: Complemental strand, 12629483 - 12629453
Alignment:
Q  160 gggttaataggcttttacccccctgccattt 190  Q
    |||||||||||||||||||||||||||||||    
T  12629483 gggttaataggcttttacccccctgccattt 12629453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 190
Target Start/End: Original strand, 21261980 - 21262010
Alignment:
Q  160 gggttaataggcttttacccccctgccattt 190  Q
    |||||||||||||||||||||||||||||||    
T  21261980 gggttaataggcttttacccccctgccattt 21262010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 192
Target Start/End: Original strand, 23525581 - 23525613
Alignment:
Q  160 gggttaataggcttttacccccctgccatttgg 192  Q
    ||||||||||||||||||||| |||||||||||    
T  23525581 gggttaataggcttttaccccgctgccatttgg 23525613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 149 - 195
Target Start/End: Original strand, 32953083 - 32953129
Alignment:
Q  149 taaaaataaatgggttaataggcttttacccccctgccatttggacg 195  Q
    |||| |||||||||||||||| |||||||||||||||||||||||||    
T  32953083 taaatataaatgggttaatagacttttacccccctgccatttggacg 32953129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 195 - 236
Target Start/End: Complemental strand, 39606218 - 39606177
Alignment:
Q  195 gtctcaaaataggtctgaaaattctaacccataaatccgaag 236  Q
    |||||||||||| |||||||||||||||||||||||||||||    
T  39606218 gtctcaaaatagttctgaaaattctaacccataaatccgaag 39606177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 150 - 191
Target Start/End: Original strand, 15438461 - 15438501
Alignment:
Q  150 aaaaataaatgggttaataggcttttacccccctgccatttg 191  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  15438461 aaaaataaa-gggttaataggcttttacccccctgccatttg 15438501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 192
Target Start/End: Complemental strand, 36438832 - 36438795
Alignment:
Q  155 taaatgggttaataggcttttacccccctgccatttgg 192  Q
    |||| |||||||||||||||||||||||||||||||||    
T  36438832 taaaagggttaataggcttttacccccctgccatttgg 36438795  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 191
Target Start/End: Complemental strand, 37086803 - 37086764
Alignment:
Q  151 aaaataaatgggttaataggcttttacccccctgccatttg 191  Q
    |||||||| ||||||||||||||||||||||||||||||||    
T  37086803 aaaataaa-gggttaataggcttttacccccctgccatttg 37086764  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 198
Target Start/End: Complemental strand, 39606691 - 39606653
Alignment:
Q  160 gggttaataggcttttacccccctgccatttggacgtct 198  Q
    ||||||| |||||||||||||||||||||||||| ||||    
T  39606691 gggttaaaaggcttttacccccctgccatttggaagtct 39606653  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 192
Target Start/End: Original strand, 11150271 - 11150303
Alignment:
Q  160 gggttaataggcttttacccccctgccatttgg 192  Q
    ||||||||||||||||||||||| |||||||||    
T  11150271 gggttaataggcttttaccccccagccatttgg 11150303  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 192
Target Start/End: Complemental strand, 15439733 - 15439701
Alignment:
Q  160 gggttaataggcttttacccccctgccatttgg 192  Q
    ||||||||||||||||||||||| |||||||||    
T  15439733 gggttaataggcttttacccccccgccatttgg 15439701  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 192
Target Start/End: Original strand, 30034614 - 30034646
Alignment:
Q  160 gggttaataggcttttacccccctgccatttgg 192  Q
    ||||||||||| |||||||||||||||||||||    
T  30034614 gggttaatagggttttacccccctgccatttgg 30034646  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 192
Target Start/End: Original strand, 34799865 - 34799897
Alignment:
Q  160 gggttaataggcttttacccccctgccatttgg 192  Q
    |||||||||| ||||||||||||||||||||||    
T  34799865 gggttaatagacttttacccccctgccatttgg 34799897  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 192
Target Start/End: Original strand, 36437214 - 36437246
Alignment:
Q  160 gggttaataggcttttacccccctgccatttgg 192  Q
    |||||||||| ||||||||||||||||||||||    
T  36437214 gggttaatagccttttacccccctgccatttgg 36437246  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 192
Target Start/End: Complemental strand, 42278509 - 42278477
Alignment:
Q  160 gggttaataggcttttacccccctgccatttgg 192  Q
    |||||||||||||||||||||||| ||||||||    
T  42278509 gggttaataggcttttacccccctaccatttgg 42278477  T

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Target: scaffold0071 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 150 - 191
Target Start/End: Complemental strand, 23730 - 23690
Alignment:
Q  150 aaaaataaatgggttaataggcttttacccccctgccatttg 191  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  23730 aaaaataaa-gggttaataggcttttacccccctgccatttg 23690  T

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Target: scaffold0071; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 192
Target Start/End: Original strand, 22458 - 22490
Alignment:
Q  160 gggttaataggcttttacccccctgccatttgg 192  Q
    ||||||||||||||||||||||| |||||||||    
T  22458 gggttaataggcttttacccccccgccatttgg 22490  T

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Target: scaffold0049 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 159 - 192
Target Start/End: Original strand, 385 - 418
Alignment:
Q  159 tgggttaataggcttttacccccctgccatttgg 192  Q
    ||||||||||||||||||||||||||||||||||    
T  385 tgggttaataggcttttacccccctgccatttgg 418  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 190
Target Start/End: Complemental strand, 21383874 - 21383844
Alignment:
Q  160 gggttaataggcttttacccccctgccattt 190  Q
    |||||||||||||||||||||||||||||||    
T  21383874 gggttaataggcttttacccccctgccattt 21383844  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 190
Target Start/End: Original strand, 25482148 - 25482178
Alignment:
Q  160 gggttaataggcttttacccccctgccattt 190  Q
    |||||||||||||||||||||||||||||||    
T  25482148 gggttaataggcttttacccccctgccattt 25482178  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 192
Target Start/End: Original strand, 5858898 - 5858930
Alignment:
Q  160 gggttaataggcttttacccccctgccatttgg 192  Q
    |||||||||| ||||||||||||||||||||||    
T  5858898 gggttaatagacttttacccccctgccatttgg 5858930  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 192
Target Start/End: Complemental strand, 32146146 - 32146114
Alignment:
Q  160 gggttaataggcttttacccccctgccatttgg 192  Q
    ||||||||||||||||| |||||||||||||||    
T  32146146 gggttaataggcttttatccccctgccatttgg 32146114  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 192
Target Start/End: Original strand, 35223132 - 35223164
Alignment:
Q  160 gggttaataggcttttacccccctgccatttgg 192  Q
    |||||||||| ||||||||||||||||||||||    
T  35223132 gggttaatagacttttacccccctgccatttgg 35223164  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 193
Target Start/End: Original strand, 30776465 - 30776499
Alignment:
Q  159 tgggttaataggcttttacccccctgccatttgga 193  Q
    ||||||||||||||||||||||||| |||||||||    
T  30776465 tgggttaataggcttttacccccctaccatttgga 30776499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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