View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0669_low_96 (Length: 251)

Name: NF0669_low_96
Description: NF0669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0669_low_96
NF0669_low_96
[»] scaffold0157 (1 HSPs)
scaffold0157 (1-234)||(34986-35219)
[»] chr4 (5 HSPs)
chr4 (1-234)||(12485258-12485491)
chr4 (1-198)||(12469134-12469331)
chr4 (1-198)||(12466491-12466687)
chr4 (100-159)||(47518421-47518480)
chr4 (80-150)||(23054177-23054254)
[»] chr5 (2 HSPs)
chr5 (100-152)||(27170059-27170111)
chr5 (100-156)||(18697029-18697085)
[»] chr2 (2 HSPs)
chr2 (103-156)||(1551571-1551624)
chr2 (80-156)||(17281887-17281970)
[»] chr8 (1 HSPs)
chr8 (100-156)||(10408921-10408977)
[»] chr1 (2 HSPs)
chr1 (100-156)||(34118068-34118124)
chr1 (70-156)||(11407917-11408011)
[»] chr6 (1 HSPs)
chr6 (100-156)||(21881563-21881619)


Alignment Details
Target: scaffold0157 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 35219 - 34986
Alignment:
Q  1 tgttgcggctttgtttctctagcctttcaacactggtggcctgagtttttgtctttttgttgcgtggatgttgatatgagatttgttttctctcttggtg 100  Q
    ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  35219 tgttgcggctttgtttctctagcctttcaacactaatggcctgagtttttgtctttttgttgcgtggaagttgatatgagatttgttttctctcttggtg 35120  T
Q  101 aggttatgttttctcgcaacgtgagtggtgatggaccagtcacgatggtggtgatgaatatgtcatgattcttgataccaaatccgtgttcgcatatggt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  35119 aggttatgttttctcgcaacgtgagtggtgatggaccagtcacgatggtggtgatgaatatgtcatgattcttgataccaaattcgtgttcgcatatggt 35020  T
Q  201 ctgttacgattttgagggatccttggctgtgttg 234  Q
    ||||| | |||||||||||||||||| |||||||    
T  35019 ctgttccaattttgagggatccttggatgtgttg 34986  T

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Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 12485258 - 12485491
Alignment:
Q  1 tgttgcggctttgtttctctagcctttcaacactggtggcctgagtttttgtctttttgttgcgtggatgttgatatgagatttgttttctctcttggtg 100  Q
    ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  12485258 tgttgcggctttgtttctctagcctttcaacactaatggcctgagtttttgtctttttgttgcgtggaagttgatatgagatttgttttctctcttggtg 12485357  T
Q  101 aggttatgttttctcgcaacgtgagtggtgatggaccagtcacgatggtggtgatgaatatgtcatgattcttgataccaaatccgtgttcgcatatggt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  12485358 aggttatgttttctcgcaacgtgagtggtgatggaccagtcacgatggtggtgatgaatatgtcatgattcttgataccaaattcgtgttcgcatatggt 12485457  T
Q  201 ctgttacgattttgagggatccttggctgtgttg 234  Q
    ||||| | |||||||||||||||||| |||||||    
T  12485458 ctgttccaattttgagggatccttggatgtgttg 12485491  T

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Target: chr4; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 12469134 - 12469331
Alignment:
Q  1 tgttgcggctttgtttctctagcctttcaacactggtggcctgagtttttgtctttttgttgcgtggatgttgatatgagatttgttttctctcttggtg 100  Q
    ||||||||||||||||||   |   |||||||||| |||||| ||||||  ||||||||||| |||| ||||||||  |||| |||||||||||||||||    
T  12469134 tgttgcggctttgtttcttgggttattcaacactgatggccttagttttcatctttttgttgtgtggttgttgataccagatatgttttctctcttggtg 12469233  T
Q  101 aggttatgttttctcgcaacgtgagtggtgatggaccagtcacgatggtggtgatgaatatgtcatgattcttgataccaaatccgtgttcgcatatg 198  Q
    ||||| ||||||||||||||||| || |||||||||  ||||||||||||||||||||||||||| ||||  ||||||||||||  |||||| |||||    
T  12469234 aggttttgttttctcgcaacgtgggttgtgatggactggtcacgatggtggtgatgaatatgtcacgattggtgataccaaatcaatgttcgtatatg 12469331  T

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Target: chr4; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 12466491 - 12466687
Alignment:
Q  1 tgttgcggctttgtttctctagcctttcaacactggtggcctgagtttttgtctttttgttgcgtggatgttgatatgagatttgttttctctcttggtg 100  Q
    |||||| ||||||||||||| |   |||||||||| |||||| ||||||  ||||||||||| |||| ||||||||  |||| |||||||||||||||||    
T  12466491 tgttgcagctttgtttctctggttgttcaacactgatggccttagttttcatctttttgttgtgtggttgttgataccagatatgttttctctcttggtg 12466590  T
Q  101 aggttatgttttctcgcaacgtgagtggtgatggaccagtcacgatggtggtgatgaatatgtcatgattcttgataccaaatccgtgttcgcatatg 198  Q
    ||||| ||||||||||||| ||| || |||||||||  |||||||||||||||||| |||||||| ||||  ||||||||||||  |||||| |||||    
T  12466591 aggttttgttttctcgcaatgtgggttgtgatggactggtcacgatggtggtgatg-atatgtcacgattggtgataccaaatcaatgttcgtatatg 12466687  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 159
Target Start/End: Original strand, 47518421 - 47518480
Alignment:
Q  100 gaggttatgttttctcgcaacgtgagtggtgatggaccagtcacgatggtggtgatgaat 159  Q
    |||||||||||| |||||||| |  ||||||||||| ||||||| |||||||||||||||    
T  47518421 gaggttatgtttgctcgcaacataggtggtgatggatcagtcacaatggtggtgatgaat 47518480  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 80 - 150
Target Start/End: Original strand, 23054177 - 23054254
Alignment:
Q  80 gatttgttttctctcttggt-------gaggttatgttttctcgcaacgtgagtggtgatggaccagtcacgatggtg 150  Q
    ||||||||||||||||||||       |||||||||||| |||||||| |  ||||||||||| ||||||||||||||    
T  23054177 gatttgttttctctcttggttgtggtggaggttatgtttgctcgcaacataggtggtgatggatcagtcacgatggtg 23054254  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 100 - 152
Target Start/End: Original strand, 27170059 - 27170111
Alignment:
Q  100 gaggttatgttttctcgcaacgtgagtggtgatggaccagtcacgatggtggt 152  Q
    |||||||||||| |||||||||| |||||||||||| | ||||||||||||||    
T  27170059 gaggttatgtttgctcgcaacgtaagtggtgatggatcggtcacgatggtggt 27170111  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 156
Target Start/End: Complemental strand, 18697085 - 18697029
Alignment:
Q  100 gaggttatgttttctcgcaacgtgagtggtgatggaccagtcacgatggtggtgatg 156  Q
    |||||||||||| | |||||| |  ||||||||||| ||||||||||||||||||||    
T  18697085 gaggttatgtttgcccgcaacataggtggtgatggatcagtcacgatggtggtgatg 18697029  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 103 - 156
Target Start/End: Original strand, 1551571 - 1551624
Alignment:
Q  103 gttatgttttctcgcaacgtgagtggtgatggaccagtcacgatggtggtgatg 156  Q
    ||||||||| |||||||| |  ||||||||||| ||||||||||||||||||||    
T  1551571 gttatgtttgctcgcaacataggtggtgatggatcagtcacgatggtggtgatg 1551624  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 156
Target Start/End: Original strand, 17281887 - 17281970
Alignment:
Q  80 gatttgttttctctcttggt-------gaggttatgttttctcgcaacgtgagtggtgatggaccagtcacgatggtggtgatg 156  Q
    ||||||||||||||||||||       |||||||||||| |||||||| |  ||||||||||| ||||||| ||||||||||||    
T  17281887 gatttgttttctctcttggtagtggtggaggttatgtttgctcgcaacataggtggtgatggatcagtcacaatggtggtgatg 17281970  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 156
Target Start/End: Complemental strand, 10408977 - 10408921
Alignment:
Q  100 gaggttatgttttctcgcaacgtgagtggtgatggaccagtcacgatggtggtgatg 156  Q
    |||||||||||| |||||||| |  ||||||||||| | ||||||||||||||||||    
T  10408977 gaggttatgtttgctcgcaacataggtggtgatggaacggtcacgatggtggtgatg 10408921  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 156
Target Start/End: Complemental strand, 34118124 - 34118068
Alignment:
Q  100 gaggttatgttttctcgcaacgtgagtggtgatggaccagtcacgatggtggtgatg 156  Q
    |||||||||||| |||||||| |  ||||||||||| | ||||||||||||||||||    
T  34118124 gaggttatgtttgctcgcaacataggtggtgatggatcggtcacgatggtggtgatg 34118068  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 70 - 156
Target Start/End: Original strand, 11407917 - 11408011
Alignment:
Q  70 gttgatatgagatttgttttctctcttggtg--------aggttatgttttctcgcaacgtgagtggtgatggaccagtcacgatggtggtgatg 156  Q
    |||||||| | ||||||||||||||||||||        ||||||||||| |||||||| | |||||||||||| | | ||||| ||||||||||    
T  11407917 gttgatatcatatttgttttctctcttggtggtgggtggaggttatgtttgctcgcaacataagtggtgatggatcggccacgaaggtggtgatg 11408011  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 156
Target Start/End: Complemental strand, 21881619 - 21881563
Alignment:
Q  100 gaggttatgttttctcgcaacgtgagtggtgatggaccagtcacgatggtggtgatg 156  Q
    |||||||||||| ||||||||    ||||||||||| | ||||||||||||||||||    
T  21881619 gaggttatgtttgctcgcaacaaaggtggtgatggatcggtcacgatggtggtgatg 21881563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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