View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0669_low_98 (Length: 250)
Name: NF0669_low_98
Description: NF0669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0669_low_98 |
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| [»] scaffold0557 (1 HSPs) |
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| [»] scaffold0726 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 4 - 237
Target Start/End: Complemental strand, 29465442 - 29465209
Alignment:
| Q |
4 |
aaagaacttgatttcactcttttagccatggaactgaaaatacaacataaactnnnnnnntacgaccgaaataggaaataatcaatcaagagcagaccat |
103 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| ||||||||||||||||| |
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| T |
29465442 |
aaagaacttgatttcactcttttagccatggaactgaaaatacaacagaaactaaaaaaatacgaccgaaataggaaataattaatcaagagcagaccat |
29465343 |
T |
|
| Q |
104 |
tatataaaaatgtggcaccaatgctccccatttcctnnnnnnnnnnnnnttgaattaatagaaaaagtaatactaattctctatctccatgttcaagcca |
203 |
Q |
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|||| ||||||||||||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||| ||||||||||| |
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| T |
29465342 |
tatacaaaaatgtggcaccaatgctccccatttcctaaaaaaataaaaattgaatcaatagaaaaagtaatattaattctctatctccttgttcaagcca |
29465243 |
T |
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| Q |
204 |
tccctctggaatctatattccctctcatatcttc |
237 |
Q |
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||||||| |||||||||||||||||||||||||| |
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| T |
29465242 |
tccctctagaatctatattccctctcatatcttc |
29465209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0557 (Bit Score: 141; Significance: 5e-74; HSPs: 1)
Name: scaffold0557
Description:
Target: scaffold0557; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 4 - 237
Target Start/End: Original strand, 9787 - 10019
Alignment:
| Q |
4 |
aaagaacttgatttcactcttttagccatggaactgaaaatacaacataaactnnnnnnntacgaccgaaataggaaataatcaatcaagagcagaccat |
103 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| || ||||||||||||||||||||||||| |
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| T |
9787 |
aaagaacttgatttcactcttttagccatggaactgaaaatacaacagaaactaaaaaa-tacgaccgaaacagaaaataatcaatcaagagcagaccat |
9885 |
T |
|
| Q |
104 |
tatataaaaatgtggcaccaatgctccccatttcctnnnnnnnnnnnnnttgaattaatagaaaaagtaatactaattctctatctccatgttcaagcca |
203 |
Q |
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|||| ||||||||||||||||||||||||||||||| |||||| |||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
9886 |
tatacaaaaatgtggcaccaatgctccccatttcctaaaaaaataaaaattgaatcaatagaaaaagtaacactaattctctatctccatgttcaagcca |
9985 |
T |
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| Q |
204 |
tccctctggaatctatattccctctcatatcttc |
237 |
Q |
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||||||| |||||||||||||||||||||||||| |
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| T |
9986 |
tccctctagaatctatattccctctcatatcttc |
10019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0726 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: scaffold0726
Description:
Target: scaffold0726; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 4 - 237
Target Start/End: Complemental strand, 2575 - 2342
Alignment:
| Q |
4 |
aaagaacttgatttcactcttttagccatggaactgaaaatacaacataaactnnnnnnntacgaccgaaataggaaataatcaatcaagagcagaccat |
103 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||||| | | |||||||||||||||||||||||||| |
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| T |
2575 |
aaagaacttgatttcactcttttagccatggaactgaaaaaacaacagaaactaaaaaaatacgaccgagacaagaaataatcaatcaagagcagaccat |
2476 |
T |
|
| Q |
104 |
tatataaaaatgtggcaccaatgctccccatttcctnnnnnnnnnnnnnttgaattaatagaaaaagtaatactaattctctatctccatgttcaagcca |
203 |
Q |
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|||| |||||||| ||||||||||||||||||| || |||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2475 |
tatacaaaaatgtagcaccaatgctccccattttctaaaaaaataaaaattgaatcaatagaaaaagtaatactaattctctatctccatgttcaagcca |
2376 |
T |
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| Q |
204 |
tccctctggaatctatattccctctcatatcttc |
237 |
Q |
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||||||| || ||||||||||||||||||||||| |
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| T |
2375 |
tccctctagagtctatattccctctcatatcttc |
2342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 177 - 235
Target Start/End: Complemental strand, 9781951 - 9781893
Alignment:
| Q |
177 |
taattctctatctccatgttcaagccatccctctggaatctatattccctctcatatct |
235 |
Q |
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|||||||| ||||| ||||||||||||| |||| ||||||||| |||||||||||||| |
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| T |
9781951 |
taattctcaatctctatgttcaagccattcctcacgaatctataatccctctcatatct |
9781893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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