View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0670_high_1 (Length: 495)
Name: NF0670_high_1
Description: NF0670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0670_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 452; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 2 - 477
Target Start/End: Original strand, 48747092 - 48747566
Alignment:
| Q |
2 |
catcagttaacttcttttccctctccttttcaggaacatcattgaacatccaaagctctgaattatgtgctagagatgcatccagaacctaaaggaaaag |
101 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48747092 |
catcagttaacttcttttccctctccttttctggaacatcattgaacatccaaagctctgaattatgtgctagagatgcatccagaacctaaaggaaaag |
48747191 |
T |
|
| Q |
102 |
atggaatttggacatcaccaaaaaggtattaataataatacccacagagcaaataaactgctttgggaatgaagggaggattggattatggctcctcctt |
201 |
Q |
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| T |
48747192 |
atggaatttggacatcaccaaaaaggtattaataataatacccacagagcaaataaactgctttaggaatgaagggaggattggattatggctcctcctt |
48747291 |
T |
|
| Q |
202 |
cgacaacagaaaccaaaactgaaactgggcggcgctaagctcacaggactgtgtttttcaaaccatgctctagataccaacataaatctgagctaaatat |
301 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48747292 |
cgacaacagaaaccaaaactgaaactgggcggcgctaagctcacaggactgtgtttttcaaaccatgctctagataccaacataaatctgagctaaatat |
48747391 |
T |
|
| Q |
302 |
ttatcactcaaataacgaggagtgtacaagcatttatatacacgagagacataatctaaatatatttgcaaataaaaagtcctttcatgctcatttcaag |
401 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48747392 |
ttatcactcaaataacga-gagtgtacaagcatttatatacacgagagacataatctaaatatatttgcaaataaaaagtcctttcatgctcatttcaag |
48747490 |
T |
|
| Q |
402 |
cacattgacaaataaaaacaaagaaagtcaggaaccataacagtagatttctagcagcattaccatgatgatgtcc |
477 |
Q |
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| T |
48747491 |
cacattgacaaataaaaacaaagaaagtcaggaaccataacaggagatttctagcagcattaccatgatcatgtcc |
48747566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 63
Target Start/End: Complemental strand, 368149 - 368111
Alignment:
| Q |
25 |
tccttttcaggaacatcattgaacatccaaagctctgaa |
63 |
Q |
| |
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|||||||||||||| ||||||||||||||||| |||||| |
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| T |
368149 |
tccttttcaggaacttcattgaacatccaaagttctgaa |
368111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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