View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0670_high_2 (Length: 448)
Name: NF0670_high_2
Description: NF0670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0670_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 374; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 1 - 398
Target Start/End: Complemental strand, 3575649 - 3575253
Alignment:
| Q |
1 |
tgttgatgtagccattctagtattttatttgcaacttagttaaaagcaaataaatatctctattgaaaatgaagaggatggttattgatgatgctttgtt |
100 |
Q |
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| T |
3575649 |
tgttgatgtagccattctagtattttatttgcaacttagttaaatgcaaataaatagctctattgaaaatgaagaggatggttattgatgatgctttgtt |
3575550 |
T |
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| Q |
101 |
atgtcctagtggtactatttatatgttaattcatcaagaaaaactagaggtccatatcttctgaaatctatatcttgattttctattggtttggagcatt |
200 |
Q |
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| T |
3575549 |
atgtcctagtggtactatttatatgttaattcatcaagaaaaactagaggtccatatcttatgaaatctatatcttgattttctattggtttggagcatt |
3575450 |
T |
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| Q |
201 |
acacttgcatctcaaaccacatatatttctcttcagaattattatttcaaaaacatatcaaatatccagaatatgacaattgaatatcatgaaaaacttg |
300 |
Q |
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| T |
3575449 |
acacttacatctcaaaccacatatatttctcttcagaattattatttcaaaaa-atatcaaatatccagaatatgacaattgaatatcatgaaaaacttg |
3575351 |
T |
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| Q |
301 |
ttccatccaataagaaattgtcatttatgattacttgatgggataataatcaatagatttacagaaaagggaccacacagtgcactggtcccattaat |
398 |
Q |
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| T |
3575350 |
ttccatccaataagaaattgtcatttatgattacttgatgggataataatcaatagatttacagaaaagggaccacacagtgcactggtcccattaat |
3575253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 113 - 347
Target Start/End: Original strand, 3585698 - 3585942
Alignment:
| Q |
113 |
tactatttatatgttaattcatcaagaaaaactagaggtccatatcttctgaaatctatatcttgattttctattggtttggagcattacacttgcatct |
212 |
Q |
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| T |
3585698 |
tactatttatatgtgattccaacaaggaaaactagaggtccttatcttacaaaatctatatcttgattttcaattggtttcgagcattgcacttgcatct |
3585797 |
T |
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| Q |
213 |
caaaccacatatatttctcttcagaattatta----------tttcaaaaacatatcaaatatccagaatatgacaattgaatatcatgaaaaacttgtt |
302 |
Q |
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||| ||||| |||| || || |||||||| | ||||| ||| |||||| ||||||| |||||||||||||| ||||||||||| |||||| |
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| T |
3585798 |
caagccacacatatatcattttagaattataaaaaaaaaatctttcagaaatatatcagatatccacaatatgacaattgattatcatgaaaaccttgtt |
3585897 |
T |
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| Q |
303 |
ccatccaataagaaattgtcatttatgattacttgatgggataat |
347 |
Q |
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| T |
3585898 |
tcatccaataagaagttgtcatttatgatttcttgatgtgataat |
3585942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 150 - 224
Target Start/End: Complemental strand, 3572224 - 3572149
Alignment:
| Q |
150 |
gtccatatcttctgaaatctatatct-tgattttctattggtttggagcattacacttgcatctcaaaccacatat |
224 |
Q |
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| T |
3572224 |
gtccatatcttatgaaatctatgtatctaactttctattggttttgagcattacagttgcttctcaaaccacatat |
3572149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 130 - 224
Target Start/End: Complemental strand, 3563557 - 3563464
Alignment:
| Q |
130 |
ttcatcaagaaaaactagaggtccatatcttctgaaatctatatcttgattttctattggtttggagcattacacttgcatctcaaaccacatat |
224 |
Q |
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|||||| || ||||||| ||||| ||||||| |||||||||||| | | |||||||||||||| || ||| | |||| ||||||||||||||| |
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| T |
3563557 |
ttcatcgagcaaaactaaaggtcaatatcttaggaaatctatatc-taagtttctattggtttgtagtatttcctttgcttctcaaaccacatat |
3563464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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