View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0670_high_5 (Length: 274)
Name: NF0670_high_5
Description: NF0670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0670_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 29 - 252
Target Start/End: Complemental strand, 23077858 - 23077635
Alignment:
| Q |
29 |
acttgttaggtttctggttgtatcacattttaagaaactcaagatagctagtttttgtagttctaagtcttctagtggtggaggaacaaaaactactaaa |
128 |
Q |
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| T |
23077858 |
acttgttaggtttctggttgtatcgcattttaagaaacttaagatagctagtttttgtagttctaagtcttctagtggtggaggaacaaaaagtactaaa |
23077759 |
T |
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| Q |
129 |
tcaccattgaattttaaaactggtgttgatcatttttgcctccatacaggaggaaaagcagtgattgatggagttggaaagagtttagatctaagtgaat |
228 |
Q |
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| T |
23077758 |
tcaccattgaattttaaaactggtgttgatcatttttgcctccatacaggaggaaaagcagtgattgatggagttggaaagagtttagatctaagtgaat |
23077659 |
T |
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| Q |
229 |
atgatcttgagcctgcaaggatga |
252 |
Q |
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|||||||||||||||||||||||| |
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| T |
23077658 |
atgatcttgagcctgcaaggatga |
23077635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 89 - 252
Target Start/End: Complemental strand, 23073193 - 23073030
Alignment:
| Q |
89 |
ttctaagtcttctagtggtggaggaacaaaaactactaaatcaccattgaattttaaaactggtgttgatcatttttgcctccatacaggaggaaaagca |
188 |
Q |
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| T |
23073193 |
ttctaagtcttatagtggtggagcaacaaaaagtactaaatcaccattgaatttcaaaactggagttgatcatttttgcctccacacaggaggaaaagca |
23073094 |
T |
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| Q |
189 |
gtgattgatggagttggaaagagtttagatctaagtgaatatgatcttgagcctgcaaggatga |
252 |
Q |
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| T |
23073093 |
gtgattgatggaattggaatgagtttagatttaagtgaatatgatcttgagcctgcaaggatga |
23073030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 106 - 252
Target Start/End: Original strand, 23111161 - 23111307
Alignment:
| Q |
106 |
gtggaggaacaaaaactactaaatcaccattgaattttaaaactggtgttgatcatttttgcctccatacaggaggaaaagcagtgattgatggagttgg |
205 |
Q |
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||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||||| || |||||||||||||||||||||||| |||| |
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| T |
23111161 |
gtggaggaacaaaaagtactaaatcaccattgaatttcaaaactggagttgatcatttttgcctccacactggaggaaaagcagtgattgatggaattgg |
23111260 |
T |
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| Q |
206 |
aaagagtttagatctaagtgaatatgatcttgagcctgcaaggatga |
252 |
Q |
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| T |
23111261 |
aatgagtttagatttaagtgaatatgatcttgagcctgcaaggatga |
23111307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 126 - 220
Target Start/End: Complemental strand, 41080253 - 41080159
Alignment:
| Q |
126 |
aaatcaccattgaattttaaaactggtgttgatcatttttgcctccatacaggaggaaaagcagtgattgatggagttggaaagagtttagatct |
220 |
Q |
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||||||||| ||||||| ||||||||||||||||||||| ||||| || ||||||||||||||||| |||||| |||| | |||||||||||| |
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| T |
41080253 |
aaatcaccagtgaatttcaaaactggtgttgatcattttgtgctccacactggaggaaaagcagtgatagatggaattgggatgagtttagatct |
41080159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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