View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0670_high_7 (Length: 266)
Name: NF0670_high_7
Description: NF0670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0670_high_7 |
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| [»] scaffold1267 (1 HSPs) |
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| [»] chr3 (5 HSPs) |
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| [»] scaffold1268 (1 HSPs) |
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| [»] scaffold0891 (1 HSPs) |
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Alignment Details
Target: scaffold1267 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: scaffold1267
Description:
Target: scaffold1267; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 30 - 266
Target Start/End: Original strand, 97 - 333
Alignment:
| Q |
30 |
attccaacgttgtgtgatgcaactagaaaaaattgttatgctcctttcaaagagcttgtcattaagctcaacacttcatcacctcatattccagttactt |
129 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
97 |
attccaacgttgtgtgatgcaactagaaaaaattgttatgctcctttcaaagagcttgtgattaagctcaacacttcatcacctcatattccagttactt |
196 |
T |
|
| Q |
130 |
gcataattgctgatggtaattatgacttcgctggaagagtggctaaagatttgggcattcgagagatacaactttggacagcttctacttgtggctttgt |
229 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
197 |
gcataattgctgatggtaattatgactttgctggaagagtggctaaagatttgggcattcgagagatacaactttggacagcttctacttgtgggtttgt |
296 |
T |
|
| Q |
230 |
ggcatatttgcaattcgaggagcttgtcaaaagagga |
266 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
297 |
ggcatatttgcaattcgaggagcttgtcaaaagagga |
333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 30 - 266
Target Start/End: Complemental strand, 35869093 - 35868857
Alignment:
| Q |
30 |
attccaacgttgtgtgatgcaactagaaaaaattgttatgctcctttcaaagagcttgtcattaagctcaacacttcatcacctcatattccagttactt |
129 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
35869093 |
attccaacgttgtgtgatgcaactagaaaaaattgttatgctcctttcaaagagcttgtgattaagctcaacacttcatcacctcatattccagttactt |
35868994 |
T |
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| Q |
130 |
gcataattgctgatggtaattatgacttcgctggaagagtggctaaagatttgggcattcgagagatacaactttggacagcttctacttgtggctttgt |
229 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
35868993 |
gcataattgctgatggtaattatgactttgctggaagagtggctaaagatttgggcattcgagagatacaactttggacagcttctacttgtgggtttgt |
35868894 |
T |
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| Q |
230 |
ggcatatttgcaattcgaggagcttgtcaaaagagga |
266 |
Q |
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| T |
35868893 |
ggcatatttgcaattcgaggagcttgtcaaaagagga |
35868857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 30 - 266
Target Start/End: Complemental strand, 35854484 - 35854248
Alignment:
| Q |
30 |
attccaacgttgtgtgatgcaactagaaaaaattgttatgctcctttcaaagagcttgtcattaagctcaacacttcatcacctcatattccagttactt |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| ||||| ||||||||||||||||||||||||| |
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| T |
35854484 |
attccaacgttgtgtgatgcaactagaaaaaattgttatgctcctttcaaagagcttatcaataagcttaacacctcatcacctcatattccagttactt |
35854385 |
T |
|
| Q |
130 |
gcataattgctgatggtaattat-gacttcgctggaagagtggctaaagatttgggcattcgagagatacaactttggacagcttctacttgtggctttg |
228 |
Q |
| |
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|||||||||||||||| || || | || ||||||||||||||||| ||||| |||||| |||| |||| ||||||| |||||| |||||||||||| |
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| T |
35854384 |
gcataattgctgatgg-cataatgggatttgctggaagagtggctaaggatttaggcattaaagagctacagttttggactgcttctgcttgtggctttg |
35854286 |
T |
|
| Q |
229 |
tggcatatttgcaattcgaggagcttgtcaaaagagga |
266 |
Q |
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| | ||||||||||| || |||||||| ||||||||| |
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| T |
35854285 |
tcggatatttgcaatatgatgagcttgttaaaagagga |
35854248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 30 - 265
Target Start/End: Complemental strand, 35759744 - 35759509
Alignment:
| Q |
30 |
attccaacgttgtgtgatgcaactagaaaaaattgttatgctcctttcaaagagcttgtcattaagctcaacacttcatcacctcatattccagttactt |
129 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| || ||||||||||| |||||||||||||||| |
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| T |
35759744 |
attccaacgttgtgtgatgcaactagaaaaaattgttatgctcctttcaaagagcttctcaataagcttaatacttcatcaccacatattccagttactt |
35759645 |
T |
|
| Q |
130 |
gcataattgctgatggtaattatgacttcgctggaagagtggctaaagatttgggcattcgagagatacaactttggacagcttctacttgtggctttgt |
229 |
Q |
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|||| |||||||||||| || || || ||||||||||| || | |||||||||||||| ||| ||||| ||||||| |||||| ||||||| ||||| |
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| T |
35759644 |
gcattattgctgatggtctttttggttttgctggaagagtagcaagagatttgggcattcaagaaatacagttttggactgcttctgcttgtgggtttgt |
35759545 |
T |
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| Q |
230 |
ggcatatttgcaattcgaggagcttgtcaaaagagg |
265 |
Q |
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| T |
35759544 |
gggatatttgcattatgatgaacttgtcaaaagagg |
35759509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 37 - 145
Target Start/End: Complemental strand, 35776162 - 35776054
Alignment:
| Q |
37 |
cgttgtgtgatgcaactagaaaaaattgttatgctcctttcaaagagcttgtcattaagctcaacacttcatcacctcatattccagttacttgcataat |
136 |
Q |
| |
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|||||||||| |||| ||||||||| | | | |||||||| ||||||||||| | |||||||||||||| ||||| ||||||||||||||||||||||| |
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| T |
35776162 |
cgttgtgtgaagcaagtagaaaaaactttcacgctcctttgaaagagcttgtgaaaaagctcaacacttcttcaccacatattccagttacttgcataat |
35776063 |
T |
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| Q |
137 |
tgctgatgg |
145 |
Q |
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||||||||| |
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| T |
35776062 |
tgctgatgg |
35776054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 263
Target Start/End: Complemental strand, 35737772 - 35737686
Alignment:
| Q |
177 |
gatttgggcattcgagagatacaactttggacagcttctacttgtggctttgtggcatatttgcaattcgaggagcttgtcaaaaga |
263 |
Q |
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|||||||||||| |||| |||| ||||||| |||||| ||||||| || ||| |||||||||||| || |||||| |||||||| |
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| T |
35737772 |
gatttgggcattgcagagcaacaattttggactgcttctgcttgtgggttgatgggatatttgcaatttgatgagcttatcaaaaga |
35737686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1268 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: scaffold1268
Description:
Target: scaffold1268; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 30 - 266
Target Start/End: Original strand, 97 - 333
Alignment:
| Q |
30 |
attccaacgttgtgtgatgcaactagaaaaaattgttatgctcctttcaaagagcttgtcattaagctcaacacttcatcacctcatattccagttactt |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||| ||||| ||||||||||||||||||||||||| |
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| T |
97 |
attccaacgttgtgtgatgcaactagaaaaaattgttatgctcctttcaaagagcttataaataagctaaacacatcatcacctcatattccagttactt |
196 |
T |
|
| Q |
130 |
gcataattgctgatggtaattatgacttcgctggaagagtggctaaagatttgggcattcgagagatacaactttggacagcttctacttgtggctttgt |
229 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
197 |
gcataattgctgatggtaattatgactttgctggaagagtggctaaagatttgggcattcgagagatacaactttggacagcttctacttgtgggtttgt |
296 |
T |
|
| Q |
230 |
ggcatatttgcaattcgaggagcttgtcaaaagagga |
266 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
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|
| T |
297 |
ggcatatttgcaattcgaggagcttgtcaaaagagga |
333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0891 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0891
Description:
Target: scaffold0891; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 37 - 256
Target Start/End: Original strand, 134 - 353
Alignment:
| Q |
37 |
cgttgtgtgatgcaactagaaaaaattgttatgctcctttcaaagagcttgtcattaagctcaacacttcatcacctcatattccagttacttgcataat |
136 |
Q |
| |
|
|||||||||| |||| || ||| || | |||||||||||| ||||||||||||| || | ||| ||||| ||| ||| ||||||||||||||||||| |
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| T |
134 |
cgttgtgtgaagcaagtaaaaataacttttatgctcctttgaaagagcttgtcaaaaatttgaactcttcaacacaccattttccagttacttgcataat |
233 |
T |
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| Q |
137 |
tgctgatggtaattatga-cttcgctggaagagtggctaaagatttgggcattcgagagatacaactttggacagcttctacttgtggctttgtggcata |
235 |
Q |
| |
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||| ||||| |||| || ||| ||||||||||| || ||||||||||| |||| |||| || ||||||| ||||| ||| |||||| ||| ||| |
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| T |
234 |
tgccgatgg-aatttcgagctttgctggaagagtagcaaaagatttggggattcaagagctagtgttttggactgcttcggcttctggcttgttgggata |
332 |
T |
|
| Q |
236 |
tttgcaattcgaggagcttgt |
256 |
Q |
| |
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||| |||| ||| |||||||| |
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|
| T |
333 |
tttacaatacgatgagcttgt |
353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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