View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0670_high_9 (Length: 251)

Name: NF0670_high_9
Description: NF0670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0670_high_9
NF0670_high_9
[»] chr4 (1 HSPs)
chr4 (32-251)||(5957499-5957718)


Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 32 - 251
Target Start/End: Original strand, 5957499 - 5957718
Alignment:
32 aagcttccacaacagaaacacaatcccaaaccttaaaacgacgcaacnnnnnnnncaacacacctcaaaacgacacagcacaagaacaagaacatgaaca 131  Q
    |||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||| ||||||||||||||||||||||    
5957499 aagcttccacaacagaaacacaatcccaaaccttaaaacgacgcaacaaaaaaaacaacacacctcaaaacgacacaacacaagaacaagaacatgaaca 5957598  T
132 agaatttgaagattacgacgacggaattgatttcccatacgatgacccaccgttaatatgctgtttcggagcagcacagagggagtttctacctacggtg 231  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
5957599 agaatttgaagattacgacgacggaattgatttcccatacgatgacccaccgttaatatgctgtttcggagcagcacagagggagtttctacctacggtg 5957698  T
232 cgtgtgcacgagtttccaat 251  Q
    |||||||| |||||||||||    
5957699 cgtgtgcaggagtttccaat 5957718  T

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