View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0670_low_1 (Length: 532)
Name: NF0670_low_1
Description: NF0670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0670_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 428; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 10 - 475
Target Start/End: Original strand, 6697847 - 6698316
Alignment:
| Q |
10 |
tcataggacttgggtggggtctgtcccaaacttggtaaacttgtctttattgaatgactctgttcctgttttcattacctttacttcaatcgtgcataaa |
109 |
Q |
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| T |
6697847 |
tcataggacttgggtggggtctgtcccaaacttggtaaacttgtctttattgaatgactctgttcctgttttcattacctttacttcaatcgtgcataaa |
6697946 |
T |
|
| Q |
110 |
catttaaacacccatttgtcaccccaaaacagttaaggataccccaaacacaccattggatttgaaaatcattgtgcaagcttttgattgtaaccaactc |
209 |
Q |
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| T |
6697947 |
catttaaacacccatttgtcaccccaaaacagttaaggataccccaaacacaccattggatttgaaaatcattgtgcaagcttttgattgtaaccaactc |
6698046 |
T |
|
| Q |
210 |
catgcnnnnnnnttaatttgttgatttccacaccctccggtgtgtaatcattagttaacaagaaaaattatcaaaaaagattaatt----attattagtt |
305 |
Q |
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||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
6698047 |
catgcaaaaaaattaatttgttgatttccacaccctccagtgtgtaatcattagttaacaagaaaaattatcaaaaaagattaattattaattattagtt |
6698146 |
T |
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| Q |
306 |
agtcaaacaccgcttaaaaatccaaacacgggttctctacataagtacatgaaccaatatgttctggaaaaaagggttgcatttggctcatcgattatct |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6698147 |
agtcaaacaccgcttaaaaatccaaacacgggttctctacataagtacatgaaccaatatgttctggaaaaaagggttgcatttggctcatcgattatct |
6698246 |
T |
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| Q |
406 |
aaaaatactaattaaacattgatgaagatatgattcttcaacgatgttatgcccttagaagtgtctcttc |
475 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6698247 |
aaaaatactaattaaacattgatgaagatatgattcttcaacgatgttatgcccttagaagtgtctcttc |
6698316 |
T |
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