View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0670_low_20 (Length: 260)
Name: NF0670_low_20
Description: NF0670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0670_low_20 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 159; Significance: 9e-85; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 94 - 260
Target Start/End: Complemental strand, 3895329 - 3895163
Alignment:
| Q |
94 |
tcctttgttctctcctttgcatcataagcataatctctagctttctccccagcactctctgcagcttcctttgttctatccttggcatcataagcatagt |
193 |
Q |
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| T |
3895329 |
tccttggttctttcctttgcatcataagcataatctctagctttctccccagcactctctgcagcttcctttgttctatccttggcatcataagcatagt |
3895230 |
T |
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| Q |
194 |
ctcttatactctctccagcattctctgcagcatcctttgttctctcctttgcatcataagcataatc |
260 |
Q |
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| T |
3895229 |
ctcttatactctctccagcattctctgcagcatcctttgttctctcctttgcatcataagcataatc |
3895163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 3895290 - 3895139
Alignment:
| Q |
1 |
gctttctccccagcactctctgcagcttcctttgttctatccttggcatcataagcatagtctcttatactctctccagcattctctgcagcatcctttg |
100 |
Q |
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| T |
3895290 |
gctttctccccagcactctctgcagcttcctttgttctatccttggcatcataagcatagtctcttatactctctccagcattctctgcagcatcctttg |
3895191 |
T |
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| Q |
101 |
ttctctcctttgcatcataagcataatctctagctttctccccagcactctc |
152 |
Q |
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| T |
3895190 |
ttctctcctttgcatcataagcataatctctagccttctctccagcattctc |
3895139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 26 - 218
Target Start/End: Complemental strand, 3895331 - 3895139
Alignment:
| Q |
26 |
cttcctttgttctatccttggcatcataagcatagtctcttatactctctccagcattctctgcagcatcctttgttctctcctttgcatcataagcata |
125 |
Q |
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| T |
3895331 |
cttccttggttctttcctttgcatcataagcataatctctagctttctccccagcactctctgcagcttcctttgttctatccttggcatcataagcata |
3895232 |
T |
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| Q |
126 |
atctctagctttctccccagcactctctgcagcttcctttgttctatccttggcatcataagcatagtctcttatactctctccagcattctc |
218 |
Q |
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||||| |||| |||||| |||||||||| ||||||||||| ||||| |||||||||||||| ||||| |||||||||||||||| |
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| T |
3895231 |
gtctcttatactctctccagcattctctgcagcatcctttgttctctcctttgcatcataagcataatctctagccttctctccagcattctc |
3895139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 155
Target Start/End: Complemental strand, 3895056 - 3895016
Alignment:
| Q |
115 |
tcataagcataatctctagctttctccccagcactctctgc |
155 |
Q |
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| T |
3895056 |
tcataagcatagtctctagctttctctccagcattctctgc |
3895016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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