View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0670_low_23 (Length: 251)
Name: NF0670_low_23
Description: NF0670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0670_low_23 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 32 - 251
Target Start/End: Original strand, 5957499 - 5957718
Alignment:
| Q |
32 |
aagcttccacaacagaaacacaatcccaaaccttaaaacgacgcaacnnnnnnnncaacacacctcaaaacgacacagcacaagaacaagaacatgaaca |
131 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
5957499 |
aagcttccacaacagaaacacaatcccaaaccttaaaacgacgcaacaaaaaaaacaacacacctcaaaacgacacaacacaagaacaagaacatgaaca |
5957598 |
T |
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| Q |
132 |
agaatttgaagattacgacgacggaattgatttcccatacgatgacccaccgttaatatgctgtttcggagcagcacagagggagtttctacctacggtg |
231 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5957599 |
agaatttgaagattacgacgacggaattgatttcccatacgatgacccaccgttaatatgctgtttcggagcagcacagagggagtttctacctacggtg |
5957698 |
T |
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| Q |
232 |
cgtgtgcacgagtttccaat |
251 |
Q |
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|||||||| ||||||||||| |
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| T |
5957699 |
cgtgtgcaggagtttccaat |
5957718 |
T |
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