View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0670_low_27 (Length: 233)

Name: NF0670_low_27
Description: NF0670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0670_low_27
NF0670_low_27
[»] chr7 (17 HSPs)
chr7 (48-128)||(46505722-46505802)
chr7 (1-44)||(6542594-6542637)
chr7 (1-40)||(9537408-9537447)
chr7 (1-44)||(16134312-16134355)
chr7 (1-44)||(32106594-32106637)
chr7 (1-44)||(46505281-46505324)
chr7 (1-35)||(5384052-5384086)
chr7 (1-35)||(8509158-8509192)
chr7 (1-35)||(26350436-26350470)
chr7 (1-35)||(44905488-44905522)
chr7 (48-80)||(5383820-5383852)
chr7 (48-80)||(6542843-6542875)
chr7 (48-80)||(8509392-8509424)
chr7 (48-80)||(16133882-16133914)
chr7 (48-80)||(26350204-26350236)
chr7 (48-80)||(32107035-32107067)
chr7 (48-80)||(44905722-44905754)
[»] scaffold0254 (2 HSPs)
scaffold0254 (1-44)||(10158-10201)
scaffold0254 (48-80)||(9920-9952)
[»] chr8 (8 HSPs)
chr8 (1-44)||(9327305-9327348)
chr8 (1-44)||(21205151-21205194)
chr8 (1-44)||(21990257-21990300)
chr8 (4-40)||(21458868-21458904)
chr8 (48-80)||(9327067-9327099)
chr8 (48-80)||(21204913-21204945)
chr8 (48-80)||(21989827-21989859)
chr8 (48-80)||(21332154-21332186)
[»] chr6 (6 HSPs)
chr6 (1-44)||(16906084-16906127)
chr6 (1-44)||(18167384-18167427)
chr6 (1-44)||(31364957-31365000)
chr6 (1-44)||(24924236-24924279)
chr6 (48-80)||(16906531-16906563)
chr6 (48-80)||(31365398-31365430)
[»] chr5 (5 HSPs)
chr5 (1-44)||(26194474-26194517)
chr5 (1-44)||(18387904-18387947)
chr5 (1-35)||(33947449-33947483)
chr5 (48-80)||(26194044-26194076)
chr5 (48-80)||(33947683-33947715)
[»] chr4 (2 HSPs)
chr4 (1-44)||(6700336-6700379)
chr4 (48-80)||(6700585-6700617)
[»] chr2 (6 HSPs)
chr2 (1-44)||(9505932-9505975)
chr2 (1-40)||(45022577-45022616)
chr2 (1-35)||(18659311-18659345)
chr2 (48-80)||(9505694-9505726)
chr2 (70-128)||(9505637-9505695)
chr2 (48-80)||(18659545-18659577)
[»] scaffold0005 (2 HSPs)
scaffold0005 (1-44)||(312307-312350)
scaffold0005 (49-80)||(311859-311890)
[»] chr3 (7 HSPs)
chr3 (1-44)||(6430539-6430582)
chr3 (1-44)||(16408995-16409038)
chr3 (1-35)||(9545290-9545324)
chr3 (1-34)||(8981077-8981110)
chr3 (47-80)||(16409435-16409468)
chr3 (48-80)||(8981519-8981551)
chr3 (48-80)||(9545524-9545556)
[»] scaffold0277 (1 HSPs)
scaffold0277 (70-138)||(21138-21206)


Alignment Details
Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 48 - 128
Target Start/End: Original strand, 46505722 - 46505802
Alignment:
Q  48 gtcagaatgttgaaattcctgctgttcagaatgatgaaacctctattgttcagaatgttaaagtgtctgaagcccaaaatg 128  Q
    ||||||||||||||||||||||||||||||||| |||||| ||| ||| ||||||||||  ||||||| ||||||| ||||    
T  46505722 gtcagaatgttgaaattcctgctgttcagaatgttgaaacttctgttggtcagaatgttgcagtgtctaaagcccagaatg 46505802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 6542594 - 6542637
Alignment:
Q  1 cagataccaaaactccctctccaccagcagaaaatctgttctct 44  Q
    ||||||||||||||||||||||||||||||||||| ||||||||    
T  6542594 cagataccaaaactccctctccaccagcagaaaatttgttctct 6542637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 9537447 - 9537408
Alignment:
Q  1 cagataccaaaactccctctccaccagcagaaaatctgtt 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  9537447 cagataccaaaactccctctccaccagcagaaaatctgtt 9537408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 16134355 - 16134312
Alignment:
Q  1 cagataccaaaactccctctccaccagcagaaaatctgttctct 44  Q
    ||||||||||||||||||||||||||||||||||| ||||||||    
T  16134355 cagataccaaaactccctctccaccagcagaaaatttgttctct 16134312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 32106594 - 32106637
Alignment:
Q  1 cagataccaaaactccctctccaccagcagaaaatctgttctct 44  Q
    ||||||||||||||||||||||||||||||||||| ||||||||    
T  32106594 cagataccaaaactccctctccaccagcagaaaatttgttctct 32106637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 46505281 - 46505324
Alignment:
Q  1 cagataccaaaactccctctccaccagcagaaaatctgttctct 44  Q
    ||||||||||||||||||||||||||||||||||| ||||||||    
T  46505281 cagataccaaaactccctctccaccagcagaaaatttgttctct 46505324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 5384086 - 5384052
Alignment:
Q  1 cagataccaaaactccctctccaccagcagaaaat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  5384086 cagataccaaaactccctctccaccagcagaaaat 5384052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 8509158 - 8509192
Alignment:
Q  1 cagataccaaaactccctctccaccagcagaaaat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  8509158 cagataccaaaactccctctccaccagcagaaaat 8509192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 26350470 - 26350436
Alignment:
Q  1 cagataccaaaactccctctccaccagcagaaaat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  26350470 cagataccaaaactccctctccaccagcagaaaat 26350436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 44905488 - 44905522
Alignment:
Q  1 cagataccaaaactccctctccaccagcagaaaat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  44905488 cagataccaaaactccctctccaccagcagaaaat 44905522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 80
Target Start/End: Complemental strand, 5383852 - 5383820
Alignment:
Q  48 gtcagaatgttgaaattcctgctgttcagaatg 80  Q
    |||||||||||||||||||||||||||||||||    
T  5383852 gtcagaatgttgaaattcctgctgttcagaatg 5383820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 80
Target Start/End: Original strand, 6542843 - 6542875
Alignment:
Q  48 gtcagaatgttgaaattcctgctgttcagaatg 80  Q
    |||||||||||||||||||||||||||||||||    
T  6542843 gtcagaatgttgaaattcctgctgttcagaatg 6542875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 80
Target Start/End: Original strand, 8509392 - 8509424
Alignment:
Q  48 gtcagaatgttgaaattcctgctgttcagaatg 80  Q
    |||||||||||||||||||||||||||||||||    
T  8509392 gtcagaatgttgaaattcctgctgttcagaatg 8509424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 80
Target Start/End: Complemental strand, 16133914 - 16133882
Alignment:
Q  48 gtcagaatgttgaaattcctgctgttcagaatg 80  Q
    |||||||||||||||||||||||||||||||||    
T  16133914 gtcagaatgttgaaattcctgctgttcagaatg 16133882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 80
Target Start/End: Complemental strand, 26350236 - 26350204
Alignment:
Q  48 gtcagaatgttgaaattcctgctgttcagaatg 80  Q
    |||||||||||||||||||||||||||||||||    
T  26350236 gtcagaatgttgaaattcctgctgttcagaatg 26350204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 80
Target Start/End: Original strand, 32107035 - 32107067
Alignment:
Q  48 gtcagaatgttgaaattcctgctgttcagaatg 80  Q
    |||||||||||||||||||||||||||||||||    
T  32107035 gtcagaatgttgaaattcctgctgttcagaatg 32107067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 80
Target Start/End: Original strand, 44905722 - 44905754
Alignment:
Q  48 gtcagaatgttgaaattcctgctgttcagaatg 80  Q
    |||||||||||||||||||||||||||||||||    
T  44905722 gtcagaatgttgaaattcctgctgttcagaatg 44905754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0254 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: scaffold0254
Description:

Target: scaffold0254; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 10201 - 10158
Alignment:
Q  1 cagataccaaaactccctctccaccagcagaaaatctgttctct 44  Q
    ||||||||||||||||||||||||||||||||||| ||||||||    
T  10201 cagataccaaaactccctctccaccagcagaaaatttgttctct 10158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0254; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 80
Target Start/End: Complemental strand, 9952 - 9920
Alignment:
Q  48 gtcagaatgttgaaattcctgctgttcagaatg 80  Q
    |||||||||||||||||||||||||||||||||    
T  9952 gtcagaatgttgaaattcctgctgttcagaatg 9920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 9327348 - 9327305
Alignment:
Q  1 cagataccaaaactccctctccaccagcagaaaatctgttctct 44  Q
    ||||||||||||||||||||||||||||||||||| ||||||||    
T  9327348 cagataccaaaactccctctccaccagcagaaaatttgttctct 9327305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 21205194 - 21205151
Alignment:
Q  1 cagataccaaaactccctctccaccagcagaaaatctgttctct 44  Q
    ||||||||||||||||||||||||||||||||||| ||||||||    
T  21205194 cagataccaaaactccctctccaccagcagaaaatttgttctct 21205151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 21990300 - 21990257
Alignment:
Q  1 cagataccaaaactccctctccaccagcagaaaatctgttctct 44  Q
    ||||||||||||||||||||||||||||||||||| ||||||||    
T  21990300 cagataccaaaactccctctccaccagcagaaaatttgttctct 21990257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 4 - 40
Target Start/End: Original strand, 21458868 - 21458904
Alignment:
Q  4 ataccaaaactccctctccaccagcagaaaatctgtt 40  Q
    |||||||||||||||||||||||||||||||||||||    
T  21458868 ataccaaaactccctctccaccagcagaaaatctgtt 21458904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 80
Target Start/End: Complemental strand, 9327099 - 9327067
Alignment:
Q  48 gtcagaatgttgaaattcctgctgttcagaatg 80  Q
    |||||||||||||||||||||||||||||||||    
T  9327099 gtcagaatgttgaaattcctgctgttcagaatg 9327067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 80
Target Start/End: Complemental strand, 21204945 - 21204913
Alignment:
Q  48 gtcagaatgttgaaattcctgctgttcagaatg 80  Q
    |||||||||||||||||||||||||||||||||    
T  21204945 gtcagaatgttgaaattcctgctgttcagaatg 21204913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 80
Target Start/End: Complemental strand, 21989859 - 21989827
Alignment:
Q  48 gtcagaatgttgaaattcctgctgttcagaatg 80  Q
    |||||||||||||||||||||||||||||||||    
T  21989859 gtcagaatgttgaaattcctgctgttcagaatg 21989827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 80
Target Start/End: Original strand, 21332154 - 21332186
Alignment:
Q  48 gtcagaatgttgaaattcctgctgttcagaatg 80  Q
    ||||||||||||| |||||||||||||||||||    
T  21332154 gtcagaatgttgatattcctgctgttcagaatg 21332186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 16906084 - 16906127
Alignment:
Q  1 cagataccaaaactccctctccaccagcagaaaatctgttctct 44  Q
    ||||||||||||||||||||||||||||||||||| ||||||||    
T  16906084 cagataccaaaactccctctccaccagcagaaaatttgttctct 16906127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 18167384 - 18167427
Alignment:
Q  1 cagataccaaaactccctctccaccagcagaaaatctgttctct 44  Q
    ||||||||||||||||||||||||||||||||||| ||||||||    
T  18167384 cagataccaaaactccctctccaccagcagaaaatttgttctct 18167427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 31364957 - 31365000
Alignment:
Q  1 cagataccaaaactccctctccaccagcagaaaatctgttctct 44  Q
    ||||||||||||||||||||||||||||||||||| ||||||||    
T  31364957 cagataccaaaactccctctccaccagcagaaaatttgttctct 31365000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 24924279 - 24924236
Alignment:
Q  1 cagataccaaaactccctctccaccagcagaaaatctgttctct 44  Q
    ||||||||||||||||||| ||||||||||||||| ||||||||    
T  24924279 cagataccaaaactccctccccaccagcagaaaatttgttctct 24924236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 80
Target Start/End: Original strand, 16906531 - 16906563
Alignment:
Q  48 gtcagaatgttgaaattcctgctgttcagaatg 80  Q
    |||||||||||||||||||||||||||||||||    
T  16906531 gtcagaatgttgaaattcctgctgttcagaatg 16906563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 80
Target Start/End: Original strand, 31365398 - 31365430
Alignment:
Q  48 gtcagaatgttgaaattcctgctgttcagaatg 80  Q
    |||||||||||||||||||||||||||||||||    
T  31365398 gtcagaatgttgaaattcctgctgttcagaatg 31365430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 26194517 - 26194474
Alignment:
Q  1 cagataccaaaactccctctccaccagcagaaaatctgttctct 44  Q
    ||||||||||||||||||||||||||||||||||| ||||||||    
T  26194517 cagataccaaaactccctctccaccagcagaaaatttgttctct 26194474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 18387904 - 18387947
Alignment:
Q  1 cagataccaaaactccctctccaccagcagaaaatctgttctct 44  Q
    ||||||||||||||||||||||||||| ||||||| ||||||||    
T  18387904 cagataccaaaactccctctccaccagaagaaaatttgttctct 18387947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 33947449 - 33947483
Alignment:
Q  1 cagataccaaaactccctctccaccagcagaaaat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  33947449 cagataccaaaactccctctccaccagcagaaaat 33947483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 80
Target Start/End: Complemental strand, 26194076 - 26194044
Alignment:
Q  48 gtcagaatgttgaaattcctgctgttcagaatg 80  Q
    |||||||||||||||||||||||||||||||||    
T  26194076 gtcagaatgttgaaattcctgctgttcagaatg 26194044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 80
Target Start/End: Original strand, 33947683 - 33947715
Alignment:
Q  48 gtcagaatgttgaaattcctgctgttcagaatg 80  Q
    |||||||||||||||||||||||||||||||||    
T  33947683 gtcagaatgttgaaattcctgctgttcagaatg 33947715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 6700336 - 6700379
Alignment:
Q  1 cagataccaaaactccctctccaccagcagaaaatctgttctct 44  Q
    ||||||||||||||||||||||||||||||||||| ||||||||    
T  6700336 cagataccaaaactccctctccaccagcagaaaatttgttctct 6700379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 80
Target Start/End: Original strand, 6700585 - 6700617
Alignment:
Q  48 gtcagaatgttgaaattcctgctgttcagaatg 80  Q
    |||||||||||||||||||||||||||||||||    
T  6700585 gtcagaatgttgaaattcctgctgttcagaatg 6700617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 9505975 - 9505932
Alignment:
Q  1 cagataccaaaactccctctccaccagcagaaaatctgttctct 44  Q
    ||||||||||||||||||||||||||||||||||| ||||||||    
T  9505975 cagataccaaaactccctctccaccagcagaaaatgtgttctct 9505932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 45022577 - 45022616
Alignment:
Q  1 cagataccaaaactccctctccaccagcagaaaatctgtt 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  45022577 cagataccaaaactccctctccaccagcagaaaatctgtt 45022616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 18659311 - 18659345
Alignment:
Q  1 cagataccaaaactccctctccaccagcagaaaat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  18659311 cagataccaaaactccctctccaccagcagaaaat 18659345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 80
Target Start/End: Complemental strand, 9505726 - 9505694
Alignment:
Q  48 gtcagaatgttgaaattcctgctgttcagaatg 80  Q
    |||||||||||||||||||||||||||||||||    
T  9505726 gtcagaatgttgaaattcctgctgttcagaatg 9505694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 128
Target Start/End: Complemental strand, 9505695 - 9505637
Alignment:
Q  70 tgttcagaatgatgaaacctctattgttcagaatgttaaagtgtctgaagcccaaaatg 128  Q
    ||||||||||| |||||| |||  || ||||||||||| ||||||||||||||| ||||    
T  9505695 tgttcagaatgttgaaacttctgctggtcagaatgttacagtgtctgaagcccagaatg 9505637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 80
Target Start/End: Original strand, 18659545 - 18659577
Alignment:
Q  48 gtcagaatgttgaaattcctgctgttcagaatg 80  Q
    ||||||||||||||| |||||||||||||||||    
T  18659545 gtcagaatgttgaaaatcctgctgttcagaatg 18659577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 312350 - 312307
Alignment:
Q  1 cagataccaaaactccctctccaccagcagaaaatctgttctct 44  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||    
T  312350 cagataccaaaactccctccccatcagcagaaaatctgttctct 312307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 80
Target Start/End: Complemental strand, 311890 - 311859
Alignment:
Q  49 tcagaatgttgaaattcctgctgttcagaatg 80  Q
    ||||||||||||||||||||||||||||||||    
T  311890 tcagaatgttgaaattcctgctgttcagaatg 311859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 6430539 - 6430582
Alignment:
Q  1 cagataccaaaactccctctccaccagcagaaaatctgttctct 44  Q
    ||||||||||||||||||| ||||||||||||||| ||||||||    
T  6430539 cagataccaaaactccctccccaccagcagaaaatttgttctct 6430582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 16408995 - 16409038
Alignment:
Q  1 cagataccaaaactccctctccaccagcagaaaatctgttctct 44  Q
    ||||||||||||||||||||||||||||||||||  ||||||||    
T  16408995 cagataccaaaactccctctccaccagcagaaaaattgttctct 16409038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 9545290 - 9545324
Alignment:
Q  1 cagataccaaaactccctctccaccagcagaaaat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  9545290 cagataccaaaactccctctccaccagcagaaaat 9545324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 8981077 - 8981110
Alignment:
Q  1 cagataccaaaactccctctccaccagcagaaaa 34  Q
    ||||||||||||||||||||||||||||||||||    
T  8981077 cagataccaaaactccctctccaccagcagaaaa 8981110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 80
Target Start/End: Original strand, 16409435 - 16409468
Alignment:
Q  47 agtcagaatgttgaaattcctgctgttcagaatg 80  Q
    ||||||||||||||||||||||||||||||||||    
T  16409435 agtcagaatgttgaaattcctgctgttcagaatg 16409468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 80
Target Start/End: Original strand, 8981519 - 8981551
Alignment:
Q  48 gtcagaatgttgaaattcctgctgttcagaatg 80  Q
    |||||||||||||||||||||||||||||||||    
T  8981519 gtcagaatgttgaaattcctgctgttcagaatg 8981551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 80
Target Start/End: Original strand, 9545524 - 9545556
Alignment:
Q  48 gtcagaatgttgaaattcctgctgttcagaatg 80  Q
    ||||||||||||||| |||||||||||||||||    
T  9545524 gtcagaatgttgaaaatcctgctgttcagaatg 9545556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 138
Target Start/End: Complemental strand, 21206 - 21138
Alignment:
Q  70 tgttcagaatgatgaaacctctattgttcagaatgttaaagtgtctgaagcccaaaatgttgatgatgt 138  Q
    ||||||||||| ||||||||||  || ||||||||||   |||||||||||||| |||| ||| |||||    
T  21206 tgttcagaatgttgaaacctctgctgctcagaatgttgctgtgtctgaagcccagaatgatgaagatgt 21138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 3230 times since January 2019
Visitors: 4030