View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0670_low_4 (Length: 426)

Name: NF0670_low_4
Description: NF0670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0670_low_4
NF0670_low_4
[»] chr1 (3 HSPs)
chr1 (30-418)||(50750018-50750412)
chr1 (159-355)||(19411830-19412020)
chr1 (30-58)||(32575035-32575063)
[»] chr4 (1 HSPs)
chr4 (162-209)||(4075257-4075304)
[»] scaffold0136 (1 HSPs)
scaffold0136 (160-206)||(4423-4469)
[»] chr8 (1 HSPs)
chr8 (163-209)||(39085604-39085650)
[»] chr5 (1 HSPs)
chr5 (165-210)||(15113354-15113399)
[»] chr3 (1 HSPs)
chr3 (165-209)||(18358875-18358919)


Alignment Details
Target: chr1 (Bit Score: 347; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 30 - 418
Target Start/End: Original strand, 50750018 - 50750412
Alignment:
Q  30 aaaacaacaatgttcttgcaagagttaccataaaaaactctacataattaaaaaa-gaaactcagatctagagcagatgttgtgtacactgc-----tta 123  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||     ||     
T  50750018 aaaacaacaattttcttgcaagagttaccataaaaaactctacataataaaaaaaagaaactcagatctagagcagatgttgtgtacactgcactgcttc 50750117  T
Q  124 catttttgtagttatagttaaagccatgcactgagcatctcattccaaatatcaggcacaccagggaggcaccaatggctgcaatcagaggactgaccat 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50750118 catttttgtagttatagttaaagccatgcactgagcatctcattccaaatatcaggcacaccagggaggcaccaatggctgcaatcagaggactgaccat 50750217  T
Q  224 taccttgtttctgcctctcttcttcacttattgccttactatacactgaaggatgtccatctcttctaaaagcagtcattgttgtaatatcttgtagata 323  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50750218 taccttgtttctgcctctctttttcacttattgccttactatacactgaaggatgtccatctcttctaaaagcagtcattgttgtaatatcttgtagata 50750317  T
Q  324 tactggaaatctcattctcttcagcactccttttagcactaccagtggtcctggaacatgtaagtggctgaaatattttacaggttgcctatgat 418  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  50750318 tactggaaatctcattctcttcagcactccttttagcactaccagtggtcctggaacatgtaagtggctgaaatattttacaggttgcctttgat 50750412  T

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Target: chr1; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 159 - 355
Target Start/End: Original strand, 19411830 - 19412020
Alignment:
Q  159 catctcattccaaatatcaggcacaccagggaggcaccaatggctgcaatcagaggactgaccattaccttgtttctgcctctcttcttcacttattgcc 258  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||  | | ||||||||      | ||||  ||  |||||    
T  19411830 catctcattccaaatatcaggcacaccagggaggcaccaatgactgcaatcagaggaatggcccattctttgtttct------catcttggctggttgcc 19411923  T
Q  259 ttactatacactgaaggatgtccatctcttctaaaagcagtcattgttgtaatatcttgtagatatactggaaatctcattctcttcagcactcctt 355  Q
    || |||||||||||||||||||||||||| |  || ||||||||||| ||||||||||| || ||||| ||||| |||||| |||||||||||||||    
T  19411924 ttcctatacactgaaggatgtccatctctgcgtaaggcagtcattgtcgtaatatcttgcaggtataccggaaacctcattttcttcagcactcctt 19412020  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 58
Target Start/End: Original strand, 32575035 - 32575063
Alignment:
Q  30 aaaacaacaatgttcttgcaagagttacc 58  Q
    |||||||||||||||||||||||||||||    
T  32575035 aaaacaacaatgttcttgcaagagttacc 32575063  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 162 - 209
Target Start/End: Original strand, 4075257 - 4075304
Alignment:
Q  162 ctcattccaaatatcaggcacaccagggaggcaccaatggctgcaatc 209  Q
    |||||||||| ||||||||||||||||||| ||||||||  |||||||    
T  4075257 ctcattccaagtatcaggcacaccagggagacaccaatgtatgcaatc 4075304  T

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Target: scaffold0136 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 160 - 206
Target Start/End: Original strand, 4423 - 4469
Alignment:
Q  160 atctcattccaaatatcaggcacaccagggaggcaccaatggctgca 206  Q
    |||||||||||  ||||||| || |||||||||||||||||||||||    
T  4423 atctcattccatgtatcaggaacgccagggaggcaccaatggctgca 4469  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 163 - 209
Target Start/End: Complemental strand, 39085650 - 39085604
Alignment:
Q  163 tcattccaaatatcaggcacaccagggaggcaccaatggctgcaatc 209  Q
    |||||||| ||||||||||| ||||| || |||||||||||||||||    
T  39085650 tcattccacatatcaggcactccaggtagacaccaatggctgcaatc 39085604  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 210
Target Start/End: Complemental strand, 15113399 - 15113354
Alignment:
Q  165 attccaaatatcaggcacaccagggaggcaccaatggctgcaatca 210  Q
    ||||||| ||||||| |||||||| || ||||||||||||||||||    
T  15113399 attccaagtatcaggaacaccaggcagacaccaatggctgcaatca 15113354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 165 - 209
Target Start/End: Original strand, 18358875 - 18358919
Alignment:
Q  165 attccaaatatcaggcacaccagggaggcaccaatggctgcaatc 209  Q
    ||||||| ||||||| |||||||  ||||||||||||||||||||    
T  18358875 attccaagtatcaggaacaccagctaggcaccaatggctgcaatc 18358919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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