View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0670_low_9 (Length: 352)
Name: NF0670_low_9
Description: NF0670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0670_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 168; Significance: 5e-90; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 16 - 187
Target Start/End: Complemental strand, 11995581 - 11995410
Alignment:
| Q |
16 |
atacataaaacttaggcagcacattaaaagttgaagaatttttctatatgattacaaatataataatattaaattaagaaaataatcttgcattaaaaca |
115 |
Q |
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| T |
11995581 |
atacataaaacttaggcagcacattaaaagttgaagaatttttctatatgattacaaatataataatattaaattaagaaaataatcttgcattaaaaca |
11995482 |
T |
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| Q |
116 |
ctatggaaactaaaagacataaatttagacaaaaaagattgaagttgttcttaggttgacaagaaatatgtt |
187 |
Q |
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| T |
11995481 |
ctatggaaactaaaagacataaatttagacaaaaaagattgaagttgttcataggttgacaagaaatatgtt |
11995410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 192 - 251
Target Start/End: Complemental strand, 11995357 - 11995298
Alignment:
| Q |
192 |
aacatcatactacaccttttggttgatgtgggcagggacggattcagattttaggtatat |
251 |
Q |
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| T |
11995357 |
aacatcatactacacctgttggttgatgtgggcagagacggatccaaactttaggtatat |
11995298 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 4e-23; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 41 - 139
Target Start/End: Complemental strand, 24590359 - 24590260
Alignment:
| Q |
41 |
aaaagttgaagaatttttc---tatatgattacaaatataataatattaaattaagaaaataatcttgcattaaaacactatggaaactaaaagacataa |
137 |
Q |
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| T |
24590359 |
aaaagttgaagaatttttccactatatgattacaaatataacaatattaaattaagaaaataat-ttgcattaaaa-actttggaaaatgaaagacataa |
24590262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 60 - 130
Target Start/End: Complemental strand, 32929002 - 32928932
Alignment:
| Q |
60 |
tatatgattacaaatataataatattaaattaagaaaataatcttgcattaaaacactatggaaactaaaa |
130 |
Q |
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| T |
32929002 |
tatatgattatatatataataatatcaaattaagaaaacaatattgcattaagacactacggaaaataaaa |
32928932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 108
Target Start/End: Complemental strand, 20979894 - 20979854
Alignment:
| Q |
67 |
ttacaaatataataatattaaattaagaaaataatcttgcat |
108 |
Q |
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| T |
20979894 |
ttacaaatataataattttaaattaag-aaataatcttgcat |
20979854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 86 - 131
Target Start/End: Complemental strand, 41364244 - 41364199
Alignment:
| Q |
86 |
aaattaagaaaataatcttgcattaaaacactatggaaactaaaag |
131 |
Q |
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| T |
41364244 |
aaattaagaaaataatcttgcaataaaacactacggaaaataaaag |
41364199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 195 - 223
Target Start/End: Complemental strand, 41364049 - 41364021
Alignment:
| Q |
195 |
atcatactacaccttttggttgatgtggg |
223 |
Q |
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| T |
41364049 |
atcatactacaccttttggttgatgtggg |
41364021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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