View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0671_high_10 (Length: 360)

Name: NF0671_high_10
Description: NF0671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0671_high_10
NF0671_high_10
[»] chr8 (4 HSPs)
chr8 (123-326)||(9289682-9289887)
chr8 (123-326)||(8211442-8211643)
chr8 (26-60)||(8211725-8211759)
chr8 (26-60)||(9289969-9290003)
[»] chr3 (4 HSPs)
chr3 (123-326)||(51423869-51424074)
chr3 (216-326)||(11685470-11685580)
chr3 (126-206)||(11685962-11686042)
chr3 (26-60)||(11686127-11686161)
[»] scaffold0442 (2 HSPs)
scaffold0442 (123-326)||(13088-13295)
scaffold0442 (26-60)||(12972-13006)
[»] chr4 (3 HSPs)
chr4 (127-326)||(7055304-7055507)
chr4 (123-326)||(14463118-14463326)
chr4 (26-60)||(7055184-7055218)
[»] chr2 (2 HSPs)
chr2 (123-326)||(38979626-38979831)
chr2 (26-60)||(38980287-38980321)
[»] chr6 (2 HSPs)
chr6 (123-206)||(24998892-24998975)
chr6 (26-60)||(24999058-24999092)


Alignment Details
Target: chr8 (Bit Score: 107; Significance: 1e-53; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 123 - 326
Target Start/End: Complemental strand, 9289887 - 9289682
Alignment:
Q  123 ctgttgcacctagaggattaaccaaaataacaaattcatgatggtaatttaatttgttcccgaggaattcaaatgcacataaggnnnnnnnnt--tataa 220  Q
    ||||||||||||||||||||||||||| |||| ||||||||||||||| ||||| ||| |||||||||||||||||| |||||            |||||    
T  9289887 ctgttgcacctagaggattaaccaaaaaaacatattcatgatggtaatgtaattcgttgccgaggaattcaaatgcatataagaaaaaaaatcactataa 9289788  T
Q  221 aataaaacatctatgaagccaattctactatatatatgtccacaatagtcttagttcttaagtaattgcattcttttggcggttcttgtacaaccctcca 320  Q
    ||||||||||||||||||||| ||||||||||||| |||||||  |||||||||||||||||||||||||| |||||||| |||||||||||| || |||    
T  9289787 aataaaacatctatgaagccacttctactatatatgtgtccacggtagtcttagttcttaagtaattgcatccttttggctgttcttgtacaatccgcca 9289688  T
Q  321 tcaagt 326  Q
    ||||||    
T  9289687 tcaagt 9289682  T

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Target: chr8; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 123 - 326
Target Start/End: Complemental strand, 8211643 - 8211442
Alignment:
Q  123 ctgttgcacctagaggattaaccaaaataacaaattcatgatggtaatttaatttgttcccgaggaattcaaatgcacataaggnnnnnnnnttataaaa 222  Q
    ||||||||||||||||||||||||||| |||| ||||||||||||||| ||||| |||  ||||||||||||||||| ||||||          | |  |    
T  8211643 ctgttgcacctagaggattaaccaaaaaaacacattcatgatggtaatgtaattcgttgtcgaggaattcaaatgcatataaggaaaaaaaa--acacta 8211546  T
Q  223 taaaacatctatgaagccaattctactatatatatgtccacaatagtcttagttcttaagtaattgcattcttttggcggttcttgtacaaccctccatc 322  Q
    || || ||||| ||||||| ||||||||||||| |||||||  |||||||||||||||||||||||||| |||||||  |||||||||||| || |||||    
T  8211545 tacaatatctacgaagccacttctactatatatgtgtccacggtagtcttagttcttaagtaattgcatccttttggttgttcttgtacaatccgccatc 8211446  T
Q  323 aagt 326  Q
    ||||    
T  8211445 aagt 8211442  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 60
Target Start/End: Complemental strand, 8211759 - 8211725
Alignment:
Q  26 atcaactcttgcaagaggtagagagcccctatgga 60  Q
    |||||||||||||||||||||||||||||||||||    
T  8211759 atcaactcttgcaagaggtagagagcccctatgga 8211725  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 60
Target Start/End: Complemental strand, 9290003 - 9289969
Alignment:
Q  26 atcaactcttgcaagaggtagagagcccctatgga 60  Q
    |||||||||||||||||||||||||||||||||||    
T  9290003 atcaactcttgcaagaggtagagagcccctatgga 9289969  T

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Target: chr3 (Bit Score: 107; Significance: 1e-53; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 123 - 326
Target Start/End: Complemental strand, 51424074 - 51423869
Alignment:
Q  123 ctgttgcacctagaggattaaccaaaataacaaattcatgatggtaatttaatttgttcccgaggaattcaaatgcacataaggnnnnnnnnt--tataa 220  Q
    ||||||||||||||||||||||||||| |||| ||||||||||||||| ||||| ||| |||||||||||||||||| ||||||           |||||    
T  51424074 ctgttgcacctagaggattaaccaaaaaaacacattcatgatggtaatgtaattcgttgccgaggaattcaaatgcatataaggaaaaaaaacactataa 51423975  T
Q  221 aataaaacatctatgaagccaattctactatatatatgtccacaatagtcttagttcttaagtaattgcattcttttggcggttcttgtacaaccctcca 320  Q
    ||||||||||||||||||||| ||||||||||||| |||||||  |||||||||||||||||||||||||| |||||||  |||||||||||| || |||    
T  51423974 aataaaacatctatgaagccacttctactatatatgtgtccacggtagtcttagttcttaagtaattgcatccttttggttgttcttgtacaatccgcca 51423875  T
Q  321 tcaagt 326  Q
    ||||||    
T  51423874 tcaagt 51423869  T

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Target: chr3; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 216 - 326
Target Start/End: Complemental strand, 11685580 - 11685470
Alignment:
Q  216 tataaaataaaacatctatgaagccaattctactatatatatgtccacaatagtcttagttcttaagtaattgcattcttttggcggttcttgtacaacc 315  Q
    |||||||||||||||| || |||||| |||||| ||||||  ||||||  |||||||||||||||||||||||||| |||||||| |||||||||||| |    
T  11685580 tataaaataaaacatccataaagccacttctacaatatatgcgtccacggtagtcttagttcttaagtaattgcatccttttggctgttcttgtacaatc 11685481  T
Q  316 ctccatcaagt 326  Q
    | |||||||||    
T  11685480 cgccatcaagt 11685470  T

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Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 126 - 206
Target Start/End: Complemental strand, 11686042 - 11685962
Alignment:
Q  126 ttgcacctagaggattaaccaaaataacaaattcatgatggtaatttaatttgttcccgaggaattcaaatgcacataagg 206  Q
    |||||||||||||||||||||||| |||| ||||||||||||||| ||||| ||| |||||||||||||||||| ||||||    
T  11686042 ttgcacctagaggattaaccaaaaaaacacattcatgatggtaatgtaattcgttgccgaggaattcaaatgcatataagg 11685962  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 60
Target Start/End: Complemental strand, 11686161 - 11686127
Alignment:
Q  26 atcaactcttgcaagaggtagagagcccctatgga 60  Q
    |||||||||||||||||||||||||||||||||||    
T  11686161 atcaactcttgcaagaggtagagagcccctatgga 11686127  T

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Target: scaffold0442 (Bit Score: 91; Significance: 5e-44; HSPs: 2)
Name: scaffold0442
Description:

Target: scaffold0442; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 123 - 326
Target Start/End: Original strand, 13088 - 13295
Alignment:
Q  123 ctgttgcacctagaggattaaccaaaataacaaattcatgatggtaatttaatttgttcccgaggaattcaaatgcacataaggnnnnnnnnt----tat 218  Q
    |||||||||||||| ||||||| ||||||||| |||| |||||||||| ||||| ||| |||||||||||||||||| ||||||             |||    
T  13088 ctgttgcacctagatgattaacaaaaataacacattcgtgatggtaatgtaattcgtttccgaggaattcaaatgcatataaggaaaaaaaaaacactat 13187  T
Q  219 aaaataaaacatctatgaagccaattctactatatatatgtccacaatagtcttagttcttaagtaattgcattcttttggcggttcttgtacaaccctc 318  Q
    |||||| |||||||||||||||| ||||||||||||| |||||||  |||||||||||||||||||||||||| |||||||  |||||||||||| || |    
T  13188 aaaatacaacatctatgaagccacttctactatatatgtgtccacggtagtcttagttcttaagtaattgcatccttttggatgttcttgtacaatccac 13287  T
Q  319 catcaagt 326  Q
    ||||||||    
T  13288 catcaagt 13295  T

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Target: scaffold0442; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 60
Target Start/End: Original strand, 12972 - 13006
Alignment:
Q  26 atcaactcttgcaagaggtagagagcccctatgga 60  Q
    |||||||||||||||||||||||||||||||||||    
T  12972 atcaactcttgcaagaggtagagagcccctatgga 13006  T

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Target: chr4 (Bit Score: 86; Significance: 5e-41; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 127 - 326
Target Start/End: Original strand, 7055304 - 7055507
Alignment:
Q  127 tgcacctagaggattaaccaaaataa-caaattcatgatggtaatttaatttgttcccgaggaattcaaatgcacataaggnnnnnnnnt---tataaaa 222  Q
    |||||||||||||||||| |||| || || |||| |||||||||| ||||| |||||||||||||||||||||| ||||||            |||||||    
T  7055304 tgcacctagaggattaacaaaaaaaaacacattcgtgatggtaatgtaattcgttcccgaggaattcaaatgcatataaggaaaaaaaaacactataaaa 7055403  T
Q  223 taaaacatctatgaagccaattctactatatatatgtccacaatagtcttagttcttaagtaattgcattcttttggcggttcttgtacaaccctccatc 322  Q
    || |||||||||||||||| ||||||||||||| |||||||  |||||||||||||||||||||||||| |||||||  |||||||||||| || |||||    
T  7055404 tacaacatctatgaagccagttctactatatatgtgtccacggtagtcttagttcttaagtaattgcatccttttggttgttcttgtacaatccgccatc 7055503  T
Q  323 aagt 326  Q
    ||||    
T  7055504 aagt 7055507  T

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Target: chr4; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 123 - 326
Target Start/End: Original strand, 14463118 - 14463326
Alignment:
Q  123 ctgttgcacctagaggattaaccaaaataacaaa----ttcatgatggtaatttaatttgttcccgaggaattcaaatgcacataaggnnnnnnnnt-ta 217  Q
    |||||||||||||||||||||| |||| || |||    ||| |||||||||| ||||| |||||||||||||||||||| | ||||||          ||    
T  14463118 ctgttgcacctagaggattaacaaaaaaaaaaaacacattcgtgatggtaatgtaattcgttcccgaggaattcaaatgaatataaggaaaaaaacacta 14463217  T
Q  218 taaaataaaacatctatgaagccaattctactatatatatgtccacaatagtcttagttcttaagtaattgcattcttttggcggttcttgtacaaccct 317  Q
    ||||||| |||||||||||||||| ||||||||||||| |||||||  ||||||||||| ||||||||||| || |||||||| |||||||||||| ||     
T  14463218 taaaatacaacatctatgaagccacttctactatatatgtgtccacggtagtcttagtttttaagtaattgtatccttttggctgttcttgtacaatccg 14463317  T
Q  318 ccatcaagt 326  Q
    |||||||||    
T  14463318 ccatcaagt 14463326  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 60
Target Start/End: Original strand, 7055184 - 7055218
Alignment:
Q  26 atcaactcttgcaagaggtagagagcccctatgga 60  Q
    |||||||||||||||||||||||||||||||||||    
T  7055184 atcaactcttgcaagaggtagagagcccctatgga 7055218  T

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Target: chr2 (Bit Score: 74; Significance: 7e-34; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 123 - 326
Target Start/End: Complemental strand, 38979831 - 38979626
Alignment:
Q  123 ctgttgcacctagaggattaaccaaaataa-caaattcatgatggtaatttaatttgttcccgaggaattcaaatgcacataaggnnnnnnnnttataaa 221  Q
    |||| ||||||||||||||||| |||| || || |||| |||||||||| |||||  ||| ||||||||||||||||| ||||||         ||||||    
T  38979831 ctgtcgcacctagaggattaacaaaaaaaaacacattcgtgatggtaatgtaattcattctcgaggaattcaaatgcatataaggaaaaaacactataaa 38979732  T
Q  222 ataaaacatctatgaagccaattctactatatatatgtccacaatagtcttagttcttaagtaattgcattctttt-ggcggttcttgtacaaccctcca 320  Q
    ||| |||||||||||||| | ||||||||||||| |||||||  |||||||||| ||||||||||||||| ||||| ||| |||||||||||| ||  ||    
T  38979731 atacaacatctatgaagctacttctactatatatgtgtccacggtagtcttagtacttaagtaattgcatccttttgggctgttcttgtacaatccgaca 38979632  T
Q  321 tcaagt 326  Q
    ||||||    
T  38979631 tcaagt 38979626  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 60
Target Start/End: Complemental strand, 38980321 - 38980287
Alignment:
Q  26 atcaactcttgcaagaggtagagagcccctatgga 60  Q
    |||||||||||||||||||||||||||||| ||||    
T  38980321 atcaactcttgcaagaggtagagagcccctgtgga 38980287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 123 - 206
Target Start/End: Complemental strand, 24998975 - 24998892
Alignment:
Q  123 ctgttgcacctagaggattaaccaaaataacaaattcatgatggtaatttaatttgttcccgaggaattcaaatgcacataagg 206  Q
    ||||||||| ||||||||||||||||| | || ||||||||||||||| |||||||||||  |||| |||||||||| ||||||    
T  24998975 ctgttgcacatagaggattaaccaaaaaagcacattcatgatggtaatataatttgttcctaaggagttcaaatgcatataagg 24998892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 60
Target Start/End: Complemental strand, 24999092 - 24999058
Alignment:
Q  26 atcaactcttgcaagaggtagagagcccctatgga 60  Q
    |||||||||||||||||||||||||||||| ||||    
T  24999092 atcaactcttgcaagaggtagagagcccctgtgga 24999058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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