View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0671_high_19 (Length: 259)
Name: NF0671_high_19
Description: NF0671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0671_high_19 |
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Alignment Details
Target: chr5 (Bit Score: 176; Significance: 7e-95; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 16 - 230
Target Start/End: Original strand, 26302596 - 26302810
Alignment:
| Q |
16 |
tttactaaaaaatttaatatgagttgatgtagccaaaagaaagtttaacaagaccttcacccc-ttttatggtatgcttattttaaactcaattcctgga |
114 |
Q |
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| T |
26302596 |
tttactaagaaatt-aatatgagttgatgtagccaaaagaaagtttaacaagaccttctcccccttttatggtatgcttattttaaactcaattcctgga |
26302694 |
T |
|
| Q |
115 |
gtagcaaaaggaggagaagtcttgttaaactttctttagatgttattaatttggctaatgttacataccatcatcctttttaacgatcttataaagaaag |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| | |
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| T |
26302695 |
gtagcaaaaggaggagaagtcttgttaaactttctttagatgttattaatttggctaatgttacataccatcaccctttttaacgatctcataaagaacg |
26302794 |
T |
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| Q |
215 |
ctatcgacgttgattt |
230 |
Q |
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| T |
26302795 |
ctagcgacgttgattt |
26302810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 85; Significance: 1e-40; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 94 - 230
Target Start/End: Original strand, 13617990 - 13618135
Alignment:
| Q |
94 |
attttaaactcaattcctggagtagcaaaaggaggagaag-tcttgttaaactttctttagatgttattaatttggctaatg--------ttacatacca |
184 |
Q |
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| T |
13617990 |
attttaaactcaattccaggagtagcaaaaggaggagaaggtcttgttaaactttctttagatgttattaatttggctaatgtcagtgctttacatacca |
13618089 |
T |
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| Q |
185 |
tcatcctttttaacgatcttataaagaaagctatcgacgttgattt |
230 |
Q |
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| T |
13618090 |
tcaacctttttaacgatctcataaagaacgctagcgacgtttattt |
13618135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 4 - 51
Target Start/End: Original strand, 13616166 - 13616213
Alignment:
| Q |
4 |
tcacgggatatctttactaaaaaatttaatatgagttgatgtagccaa |
51 |
Q |
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| T |
13616166 |
tcacgggacatctttactaagaaatttaatatgagttgatgtagccaa |
13616213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 92 - 152
Target Start/End: Original strand, 25167419 - 25167480
Alignment:
| Q |
92 |
ttattttaaactcaattcctggagtagcaaaaggaggag-aagtcttgttaaactttcttta |
152 |
Q |
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|||| ||||||||||||||||||||||||||| ||||| || ||||| |||| |||||||| |
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| T |
25167419 |
ttatcttaaactcaattcctggagtagcaaaaacaggagcaactcttggtaaaatttcttta |
25167480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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