View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0671_high_8 (Length: 377)
Name: NF0671_high_8
Description: NF0671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0671_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 312; Significance: 1e-176; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 358
Target Start/End: Complemental strand, 55263323 - 55262966
Alignment:
| Q |
1 |
cctgagaacaaggtgatgtttcctcatgcctttttctttgcaatgtgactgacattctaatcagaaagcatagattatacaactacaattaatagaaaca |
100 |
Q |
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| T |
55263323 |
cctgagaacaaggtgatgtttcctcatgcctttttctttgcaatgtgactgacattctaatcagaaagcatagattatacaactacaat----agaaaca |
55263228 |
T |
|
| Q |
101 |
catgtttt----tgttgcatgtcctacagtacactattgctatacttgggtataaagaggaggacgacgcaactgtgttggagttgacatataattatgg |
196 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55263227 |
catgttttaatttgttgcatgtcctacagtacactattgctatacttgggtataaagaggaggacgacgcaactgtgttggagttgacatataattatgg |
55263128 |
T |
|
| Q |
197 |
tgtcaccgaatactctaagggaactgcttatgcacaggttagttcataagttaaattatttgaccttgaagcttaaactagatttcttcgtgtttctgta |
296 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||| |
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| T |
55263127 |
tgtcaccgaatactctaagggaactgcttatgcacaggttagttcataagttaaattatatgaccttgaagcttaaactagctttcttcgtgtttatgta |
55263028 |
T |
|
| Q |
297 |
ccatcgatggtaaaatatgtttcatgtgtctataacagattgccattggtactgatgatgtc |
358 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55263027 |
ccattgatggtaaaatatgtttcatgtgtctataacagattgccattggtactgatgatgtc |
55262966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 358
Target Start/End: Complemental strand, 55270187 - 55269830
Alignment:
| Q |
1 |
cctgagaacaaggtgatgtttcctcatgcctttttctttgcaatgtgactgacattctaatcagaaagcatagattatacaactacaattaatagaaaca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
55270187 |
cctgagaacaaggtgatgtttcctcatgcctttttctttgcaatgtgactgacattctaatcagaaagcatagattatacaactacaat----agaaaca |
55270092 |
T |
|
| Q |
101 |
catgtttt----tgttgcatgtcctacagtacactattgctatacttgggtataaagaggaggacgacgcaactgtgttggagttgacatataattatgg |
196 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55270091 |
catgttttaatttgttgcatgtcctacagtacactattgctatacttgggtataaagaggaggacgacgcaactgtgttggagttgacatataattatgg |
55269992 |
T |
|
| Q |
197 |
tgtcaccgaatactctaagggaactgcttatgcacaggttagttcataagttaaattatttgaccttgaagcttaaactagatttcttcgtgtttctgta |
296 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| || ||||| |
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| T |
55269991 |
tgtcaccgaatactctaagggaactgcttatgcacaggttagttcataagttaaattatatgaccttgaagcttaaactagctttctgcgcagctctgtc |
55269892 |
T |
|
| Q |
297 |
ccatcgatggtaaaatatgtttcatgtgtctataacagattgccattggtactgatgatgtc |
358 |
Q |
| |
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| | ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |
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|
| T |
55269891 |
ctgttaatggtaaaatatgtttcatgtgtctatgacagattgctgttggtactgatgatgtc |
55269830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 121 - 240
Target Start/End: Complemental strand, 8301226 - 8301107
Alignment:
| Q |
121 |
tacagtacactattgctatacttgggtataaagaggaggacgacgcaactgtgttggagttgacatataattatggtgtcaccgaatactctaagggaac |
220 |
Q |
| |
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||||||||||| | ||||| |||||||| ||||||| |||| | | |||||||||| |||||||||| ||||||||||| |||||| | ||||||| |
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| T |
8301226 |
tacagtacactttagctatgcttgggtacgcagaggagcacgagaccattgtgttggagctgacatataactatggtgtcactgaatacaccaagggaaa |
8301127 |
T |
|
| Q |
221 |
tgcttatgcacaggttagtt |
240 |
Q |
| |
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|||||||||||||||||||| |
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|
| T |
8301126 |
tgcttatgcacaggttagtt |
8301107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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