View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0671_low_15 (Length: 377)
Name: NF0671_low_15
Description: NF0671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0671_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 323; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 6 - 348
Target Start/End: Complemental strand, 7953690 - 7953348
Alignment:
| Q |
6 |
agcagcacagataacaatatcaacttgcttgattgccttaacaagagtttcatgatcatttatatcaccctgcagagtcaaagacatattgattagaaaa |
105 |
Q |
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||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7953690 |
agcagcacaaatcacaatatcaacttgcttgattgccttaacaagagtttcatgatcatttatatcaccctgcagagtcaaagacatattgattagaaaa |
7953591 |
T |
|
| Q |
106 |
atttaattagtataaaatataaaattatttcacatattaaaatcacttacttcaagtagaataactcctaaagattggtaattatcaataagctcttcct |
205 |
Q |
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|||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7953590 |
atttaattagtataaaatataaaattatttcagaaattgaaatcacttacttcaagtagaataactcctaaagattggtaattatcaataagctcttcct |
7953491 |
T |
|
| Q |
206 |
tggtttcaggattagcagctgtaataagctttggcttgttaacattgccaggtgtttttctaaccaaagcatatgttggatttcctgctttaatacttgc |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7953490 |
tggtttcaggattagcagctgtaataagctttggcttgttaacattgccaggtgtttttctaaccaaagcatatgttggatttcctgctttaatacttgc |
7953391 |
T |
|
| Q |
306 |
ccaaactatgtgtcttccaatagctcctgttggtcctaggatc |
348 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7953390 |
ccaaactatgtgtcttccaatagctcctgttggtcctaggatc |
7953348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 6 - 348
Target Start/End: Complemental strand, 7966570 - 7966228
Alignment:
| Q |
6 |
agcagcacagataacaatatcaacttgcttgattgccttaacaagagtttcatgatcatttatatcaccctgcagagtcaaagacatattgattagaaaa |
105 |
Q |
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||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7966570 |
agcagcacaaatcacaatatcaacttgcttgattgccttaacaagagtttcatgatcatttatatcaccctgcagagtcaaagacatattgattagaaaa |
7966471 |
T |
|
| Q |
106 |
atttaattagtataaaatataaaattatttcacatattaaaatcacttacttcaagtagaataactcctaaagattggtaattatcaataagctcttcct |
205 |
Q |
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|||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7966470 |
atttaattagtataaaatataaaattatttcagaaattgaaatcacttacttcaagtagaataactcctaaagattggtaattatcaataagctcttcct |
7966371 |
T |
|
| Q |
206 |
tggtttcaggattagcagctgtaataagctttggcttgttaacattgccaggtgtttttctaaccaaagcatatgttggatttcctgctttaatacttgc |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7966370 |
tggtttcaggattagcagctgtaataagctttggcttgttaacattgccaggtgtttttctaaccaaagcatatgttggatttcctgctttaatacttgc |
7966271 |
T |
|
| Q |
306 |
ccaaactatgtgtcttccaatagctcctgttggtcctaggatc |
348 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7966270 |
ccaaactatgtgtcttccaatagctcctgttggtcctaggatc |
7966228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 24 - 63
Target Start/End: Complemental strand, 7942409 - 7942370
Alignment:
| Q |
24 |
atcaacttgcttgattgccttaacaagagtttcatgatca |
63 |
Q |
| |
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|||||||||||| ||||||||||||||| ||||||||||| |
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|
| T |
7942409 |
atcaacttgcttaattgccttaacaagactttcatgatca |
7942370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 125; Significance: 3e-64; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 180 - 332
Target Start/End: Complemental strand, 52525970 - 52525818
Alignment:
| Q |
180 |
ttggtaattatcaataagctcttccttggtttcaggattagcagctgtaataagctttggcttgttaacattgccaggtgtttttctaaccaaagcatat |
279 |
Q |
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||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||||| || |
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| T |
52525970 |
ttggtaattctcaataagctcttccttggtttcaggattattagctgtaataagctttggtttgttaacatggccaggtgtttttctaaccaaagcagat |
52525871 |
T |
|
| Q |
280 |
gttggatttcctgctttaatacttgcccaaactatgtgtcttccaatagctcc |
332 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52525870 |
gttagatttcctgctttaatacttgcccaaactatgtgtcttccaatagctcc |
52525818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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