View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0671_low_23 (Length: 309)

Name: NF0671_low_23
Description: NF0671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0671_low_23
NF0671_low_23
[»] chr2 (11 HSPs)
chr2 (56-309)||(14477432-14477684)
chr2 (61-153)||(28249816-28249908)
chr2 (61-153)||(18491947-18492039)
chr2 (78-150)||(21938036-21938108)
chr2 (78-133)||(27679228-27679283)
chr2 (83-140)||(15967966-15968023)
chr2 (79-140)||(42139523-42139584)
chr2 (56-103)||(8752584-8752631)
chr2 (56-131)||(9613733-9613808)
chr2 (68-129)||(6472128-6472189)
chr2 (80-133)||(38578433-38578486)
[»] chr8 (12 HSPs)
chr8 (67-151)||(35764711-35764795)
chr8 (79-140)||(2111013-2111074)
chr8 (78-137)||(8407584-8407643)
chr8 (67-124)||(2476432-2476489)
chr8 (56-117)||(18892183-18892244)
chr8 (79-140)||(28947326-28947387)
chr8 (79-150)||(6078467-6078538)
chr8 (79-150)||(6082399-6082470)
chr8 (79-133)||(35252530-35252584)
chr8 (67-132)||(925968-926033)
chr8 (77-133)||(5964714-5964770)
chr8 (79-130)||(30485079-30485131)
[»] chr4 (24 HSPs)
chr4 (78-151)||(2103194-2103267)
chr4 (61-146)||(30802408-30802492)
chr4 (67-164)||(42617729-42617824)
chr4 (70-142)||(3535288-3535360)
chr4 (67-133)||(44555588-44555654)
chr4 (78-144)||(27381735-27381801)
chr4 (79-140)||(4149051-4149112)
chr4 (79-140)||(34812682-34812743)
chr4 (79-140)||(39033634-39033695)
chr4 (79-164)||(46881003-46881088)
chr4 (69-133)||(17896159-17896223)
chr4 (83-133)||(17425592-17425642)
chr4 (57-131)||(21191203-21191277)
chr4 (79-133)||(22431462-22431516)
chr4 (78-144)||(33890266-33890332)
chr4 (79-133)||(35580362-35580416)
chr4 (78-144)||(36452842-36452908)
chr4 (78-140)||(39276510-39276572)
chr4 (72-125)||(25886112-25886165)
chr4 (67-104)||(39773815-39773852)
chr4 (81-150)||(41173915-41173984)
chr4 (56-133)||(49262794-49262871)
chr4 (67-115)||(50812928-50812976)
chr4 (80-144)||(52986363-52986427)
[»] scaffold0010 (1 HSPs)
scaffold0010 (56-140)||(166714-166798)
[»] chr1 (18 HSPs)
chr1 (78-144)||(35058682-35058748)
chr1 (56-140)||(3949645-3949729)
chr1 (89-140)||(31795359-31795410)
chr1 (79-140)||(3160987-3161048)
chr1 (78-151)||(28870468-28870541)
chr1 (56-140)||(30173406-30173490)
chr1 (61-140)||(15801269-15801346)
chr1 (56-103)||(22593552-22593599)
chr1 (78-140)||(1714046-1714108)
chr1 (70-140)||(23908830-23908900)
chr1 (74-140)||(40942413-40942479)
chr1 (82-151)||(32348407-32348476)
chr1 (78-131)||(40856624-40856677)
chr1 (78-153)||(38321968-38322043)
chr1 (83-153)||(4372795-4372865)
chr1 (56-129)||(1415860-1415933)
chr1 (67-140)||(11337245-11337318)
chr1 (67-140)||(11495264-11495337)
[»] chr5 (10 HSPs)
chr5 (78-181)||(17902785-17902888)
chr5 (61-140)||(17259587-17259666)
chr5 (78-140)||(31677291-31677353)
chr5 (67-140)||(2942055-2942128)
chr5 (67-140)||(31806600-31806673)
chr5 (68-140)||(41892777-41892849)
chr5 (61-100)||(35785574-35785613)
chr5 (79-129)||(31408745-31408795)
chr5 (78-126)||(1621438-1621486)
chr5 (78-118)||(7153684-7153724)
[»] chr7 (12 HSPs)
chr7 (78-156)||(13438313-13438391)
chr7 (61-146)||(31740563-31740647)
chr7 (61-103)||(42967867-42967909)
chr7 (61-138)||(7379533-7379609)
chr7 (78-129)||(883879-883930)
chr7 (78-129)||(1243208-1243259)
chr7 (89-140)||(31627636-31627687)
chr7 (78-133)||(45672999-45673054)
chr7 (78-140)||(19683456-19683518)
chr7 (77-118)||(34837090-34837131)
chr7 (77-129)||(24838564-24838615)
chr7 (79-131)||(36407911-36407963)
[»] chr6 (9 HSPs)
chr6 (56-140)||(29052673-29052756)
chr6 (79-138)||(1288436-1288495)
chr6 (56-130)||(29490202-29490276)
chr6 (67-139)||(9195627-9195700)
chr6 (67-103)||(9195839-9195875)
chr6 (78-140)||(34544421-34544483)
chr6 (67-131)||(2046043-2046107)
chr6 (67-99)||(2255673-2255705)
chr6 (84-140)||(2748295-2748351)
[»] chr3 (15 HSPs)
chr3 (61-140)||(18084887-18084965)
chr3 (78-146)||(22838258-22838326)
chr3 (79-133)||(52594761-52594815)
chr3 (61-114)||(1742791-1742844)
chr3 (61-150)||(9198045-9198134)
chr3 (77-146)||(20873066-20873135)
chr3 (68-114)||(25290162-25290208)
chr3 (56-102)||(32326059-32326105)
chr3 (61-103)||(36878951-36878993)
chr3 (79-133)||(39720083-39720137)
chr3 (87-132)||(11042063-11042108)
chr3 (78-147)||(27696256-27696325)
chr3 (79-123)||(28956245-28956289)
chr3 (61-129)||(33282330-33282398)
chr3 (78-146)||(47108978-47109046)
[»] scaffold0536 (1 HSPs)
scaffold0536 (61-105)||(4496-4540)
[»] scaffold0004 (1 HSPs)
scaffold0004 (79-139)||(237827-237887)


Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 56 - 309
Target Start/End: Complemental strand, 14477684 - 14477432
Alignment:
Q  56 taaacattaactaaatatataatttttatgtcatttcatatttataagtttgttcaaccgttagttttaccaaacactgcaaatttaataaactagttca 155  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||    
T  14477684 taaacattaactaaatatataatttt-atgtcatttcatatttataagtttgttcaaccgttcgttttactaaacactgcaaatttaataaactagttca 14477586  T
Q  156 ttcgttatacactaacttatcagatattcaatgttttctttaccaaacatagccttagtgtctttgccaccatgtacttcgagcttgtccaaaagtggaa 255  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  14477585 ttcgctatacactaacttatcagatattcaatgttttctttaccaaacatagccttagtgtctttgccaccatgtacttcgaacttgtccaaaagtggaa 14477486  T
Q  256 tctcatttctatttgatagtcactatgatgatcttcatgggataatgttgtggt 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14477485 tctcatttctatttgatagtcactatgatgatcttcatgggataatgttgtggt 14477432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 61 - 153
Target Start/End: Complemental strand, 28249908 - 28249816
Alignment:
Q  61 attaactaaatatataatttttatgtcatttcatatttataagtttgttcaaccgttagttttaccaaacactgcaaatttaataaactagtt 153  Q
    ||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||| |||||| | ||||| |||||||||| || |||||    
T  28249908 attaactaaatatataatttttatgtcatttcatatttataagttagatcaaccattaattttactacacactacaaatttaatcaattagtt 28249816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 61 - 153
Target Start/End: Original strand, 18491947 - 18492039
Alignment:
Q  61 attaactaaatatataatttttatgtcatttcatatttataagtttgttcaaccgttagttttaccaaacactgcaaatttaataaactagtt 153  Q
    ||||| |||||||||  |||||||||||||||||||| ||||||| ||||||| | || ||||| |||||| |  ||||||||| ||||||||    
T  18491947 attaattaaatatatcttttttatgtcatttcatattaataagttagttcaactgctaattttatcaaacattataaatttaatcaactagtt 18492039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 78 - 150
Target Start/End: Original strand, 21938036 - 21938108
Alignment:
Q  78 tttttatgtcatttcatatttataagtttgttcaaccgttagttttaccaaacactgcaaatttaataaacta 150  Q
    |||||||||||||| ||||||||||| |  ||||||||||| |||||| |||||||||||||| ||| |||||    
T  21938036 tttttatgtcattttatatttataagatatttcaaccgttaattttactaaacactgcaaattcaatcaacta 21938108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 78 - 133
Target Start/End: Original strand, 27679228 - 27679283
Alignment:
Q  78 tttttatgtcatttcatatttataagtttgttcaaccgttagttttaccaaacact 133  Q
    |||||||||||||||||||||||||| | ||||||||| || |||||||| |||||    
T  27679228 tttttatgtcatttcatatttataagctagttcaaccgctaattttaccagacact 27679283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 83 - 140
Target Start/End: Original strand, 15967966 - 15968023
Alignment:
Q  83 atgtcatttcatatttataagtttgttcaaccgttagttttaccaaacactgcaaatt 140  Q
    ||||||||||||||||||||| | ||||||||| || ||||||||| |||| ||||||    
T  15967966 atgtcatttcatatttataagctagttcaaccgctaattttaccaagcactacaaatt 15968023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 79 - 140
Target Start/End: Original strand, 42139523 - 42139584
Alignment:
Q  79 ttttatgtcatttcatatttataagtttgttcaaccgttagttttaccaaacactgcaaatt 140  Q
    |||||| |||||||||||||||||| | ||||||| | || |||||||||||||| ||||||    
T  42139523 ttttatatcatttcatatttataagctagttcaactgctaattttaccaaacactacaaatt 42139584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 56 - 103
Target Start/End: Original strand, 8752584 - 8752631
Alignment:
Q  56 taaacattaactaaatatataatttttatgtcatttcatatttataag 103  Q
    |||| ||||| |||| |||| |||||||||||||||||||||||||||    
T  8752584 taaatattaattaaacatatcatttttatgtcatttcatatttataag 8752631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 56 - 131
Target Start/End: Original strand, 9613733 - 9613808
Alignment:
Q  56 taaacattaactaaatatataatttttatgtcatttcatatttataagtttgttcaaccgttagttttaccaaaca 131  Q
    |||| ||||| |||| |||| ||||| ||||||||||||||||||||| | ||||| || ||  ||||||||||||    
T  9613733 taaatattaattaaacatattattttcatgtcatttcatatttataagatagttcagccattgattttaccaaaca 9613808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 129
Target Start/End: Complemental strand, 6472189 - 6472128
Alignment:
Q  68 aaatatataatttttatgtcatttcatatttataagtttgttcaaccgttagttttaccaaa 129  Q
    |||||||| ||||||| |||||||||||||||| | || |||||| | ||| ||||||||||    
T  6472189 aaatatatcatttttaggtcatttcatatttattatttagttcaatcattaattttaccaaa 6472128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 133
Target Start/End: Complemental strand, 38578486 - 38578433
Alignment:
Q  80 tttatgtcatttcatatttataagtttgttcaaccgttagttttaccaaacact 133  Q
    |||||||||||| |||||||| || | ||| |||||||| ||||||||||||||    
T  38578486 tttatgtcattttatatttatcagctagttgaaccgttatttttaccaaacact 38578433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 67 - 151
Target Start/End: Original strand, 35764711 - 35764795
Alignment:
Q  67 taaatatataatttttatgtcatttcatatttataagtttgttcaaccgttagttttaccaaacactgcaaatttaataaactag 151  Q
    ||||||||| ||||||||||||||||||||||||||  | ||||||||| || ||||||||||||||||||||| ||| ||||||    
T  35764711 taaatatattatttttatgtcatttcatatttataaactagttcaaccgctaattttaccaaacactgcaaattcaatcaactag 35764795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 79 - 140
Target Start/End: Original strand, 2111013 - 2111074
Alignment:
Q  79 ttttatgtcatttcatatttataagtttgttcaaccgttagttttaccaaacactgcaaatt 140  Q
    ||||||||||||||||||||||||| | ||||||||| || |||||||||||||||||||||    
T  2111013 ttttatgtcatttcatatttataagctagttcaaccgctaattttaccaaacactgcaaatt 2111074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 78 - 137
Target Start/End: Original strand, 8407584 - 8407643
Alignment:
Q  78 tttttatgtcatttcatatttataagtttgttcaaccgttagttttaccaaacactgcaa 137  Q
    |||||||||||||||||||||||||| | ||||||||| || ||||||||||||||||||    
T  8407584 tttttatgtcatttcatatttataagctagttcaaccgctaattttaccaaacactgcaa 8407643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 67 - 124
Target Start/End: Complemental strand, 2476489 - 2476432
Alignment:
Q  67 taaatatataatttttatgtcatttcatatttataagtttgttcaaccgttagtttta 124  Q
    |||| |||| |||||||||| |||||||||||||||| ||||||||||| ||||||||    
T  2476489 taaacatatcatttttatgttatttcatatttataaggttgttcaaccgctagtttta 2476432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 56 - 117
Target Start/End: Complemental strand, 18892244 - 18892183
Alignment:
Q  56 taaacattaactaaatatataatttttatgtcatttcatatttataagtttgttcaaccgtt 117  Q
    |||| ||||| |||||||||| |||||||||||||||||||||| ||| |  ||||||||||    
T  18892244 taaatattaattaaatatatattttttatgtcatttcatatttacaagatacttcaaccgtt 18892183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 79 - 140
Target Start/End: Complemental strand, 28947387 - 28947326
Alignment:
Q  79 ttttatgtcatttcatatttataagtttgttcaaccgttagttttaccaaacactgcaaatt 140  Q
    ||||||||||||||||||||||||| | ||||||||   | |||||| ||||||||||||||    
T  28947387 ttttatgtcatttcatatttataagctagttcaaccacaaattttactaaacactgcaaatt 28947326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 79 - 150
Target Start/End: Complemental strand, 6078538 - 6078467
Alignment:
Q  79 ttttatgtcatttcatatttataagtttgttcaaccgttagttttaccaaacactgcaaatttaataaacta 150  Q
    ||||||||| |||||||||||||||||  ||| ||||||| ||||| |||| ||| |||||| ||| |||||    
T  6078538 ttttatgtcttttcatatttataagttacttccaccgttaattttatcaaaaactacaaattcaatcaacta 6078467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 79 - 150
Target Start/End: Complemental strand, 6082470 - 6082399
Alignment:
Q  79 ttttatgtcatttcatatttataagtttgttcaaccgttagttttaccaaacactgcaaatttaataaacta 150  Q
    ||||||||| |||||||||||||||||  ||| ||||||| ||||| |||| ||| |||||| ||| |||||    
T  6082470 ttttatgtcttttcatatttataagttacttccaccgttaattttatcaaaaactacaaattcaatcaacta 6082399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 133
Target Start/End: Complemental strand, 35252584 - 35252530
Alignment:
Q  79 ttttatgtcatttcatatttataagtttgttcaaccgttagttttaccaaacact 133  Q
    ||||||||||||| |||||||| |||  ||||||| |||| ||||||||||||||    
T  35252584 ttttatgtcattttatatttatcagtcagttcaacagttaattttaccaaacact 35252530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 132
Target Start/End: Original strand, 925968 - 926033
Alignment:
Q  67 taaatatataatttttatgtcatttcatatttataagtttgttcaaccgttagttttaccaaacac 132  Q
    ||||||||| ||||||  ||||||||||||||||||| | ||||||||  |  |||||||||||||    
T  925968 taaatatatcatttttgcgtcatttcatatttataagctggttcaaccactcattttaccaaacac 926033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 133
Target Start/End: Complemental strand, 5964770 - 5964714
Alignment:
Q  77 atttttatgtcatttcatatttataagtttgttcaaccgttagttttaccaaacact 133  Q
    ||||||||||||||| |||||||| ||||  |||||  |||| ||||||||||||||    
T  5964770 atttttatgtcattttatatttatcagttacttcaaaagttaattttaccaaacact 5964714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 130
Target Start/End: Complemental strand, 30485131 - 30485079
Alignment:
Q  79 ttttatgtcatttcatattt-ataagtttgttcaaccgttagttttaccaaac 130  Q
    |||||| ||||||||||||| ||||||| |||||||||||| |||||| ||||    
T  30485131 ttttatatcatttcatattttataagttagttcaaccgttaattttactaaac 30485079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 78 - 151
Target Start/End: Complemental strand, 2103267 - 2103194
Alignment:
Q  78 tttttatgtcatttcatatttataagtttgttcaaccgttagttttaccaaacactgcaaatttaataaactag 151  Q
    |||||||||||||| |||||||||||||||||||||| ||| |||||||||||||| |||||| ||||| ||||    
T  2103267 tttttatgtcattttatatttataagtttgttcaaccattaattttaccaaacactacaaattcaataagctag 2103194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 61 - 146
Target Start/End: Original strand, 30802408 - 30802492
Alignment:
Q  61 attaactaaatatataatttttatgtcatttcatatttataagtttgttcaaccgttagttttaccaaacactgcaaatttaataa 146  Q
    ||||| ||||||||| | |||||||||||||||||||||||||||  ||||| || || |||||||||||||| |||||| |||||    
T  30802408 attaattaaatatatcagttttatgtcatttcatatttataagttaattcaatcg-taattttaccaaacactacaaattcaataa 30802492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 67 - 164
Target Start/End: Original strand, 42617729 - 42617824
Alignment:
Q  67 taaatatataatttttatgtcatttcatatttataagtttgttcaaccgttagttttaccaaacactgcaaatttaataaactagttcattcgttata 164  Q
    ||||||| | ||||| |||||||||||||||||||| || ||||||||||||  ||||| ||||||| |||||| ||| ||||||||||| |||||||    
T  42617729 taaatattttattttcatgtcatttcatatttataaattagttcaaccgtta-atttactaaacactacaaattcaat-aactagttcatccgttata 42617824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 70 - 142
Target Start/End: Original strand, 3535288 - 3535360
Alignment:
Q  70 atatataatttttatgtcatttcatatttataagtttgttcaaccgttagttttaccaaacactgcaaattta 142  Q
    |||||| |||||||||||||||||||||||||||||  |||||| | ||  ||||||||||||| ||||||||    
T  3535288 atatattatttttatgtcatttcatatttataagttaattcaactggtaaatttaccaaacactacaaattta 3535360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 67 - 133
Target Start/End: Complemental strand, 44555654 - 44555588
Alignment:
Q  67 taaatatataatttttatgtcatttcatatttataagtttgttcaaccgttagttttaccaaacact 133  Q
    ||||||||| | ||||||||||||||||||||||||| | ||| ||||| || ||||||||||||||    
T  44555654 taaatatatcacttttatgtcatttcatatttataaggtagtttaaccgctaattttaccaaacact 44555588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 144
Target Start/End: Complemental strand, 27381801 - 27381735
Alignment:
Q  78 tttttatgtcatttcatatttataagtttgttcaaccgttagttttaccaaacactgcaaatttaat 144  Q
    |||||||||||||| || |||||||||| |||||||||||| ||||| |||||| |  |||||||||    
T  27381801 tttttatgtcattttatgtttataagttagttcaaccgttaattttatcaaacattataaatttaat 27381735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 79 - 140
Target Start/End: Original strand, 4149051 - 4149112
Alignment:
Q  79 ttttatgtcatttcatatttataagtttgttcaaccgttagttttaccaaacactgcaaatt 140  Q
    ||||||||||| |||||||||||| || | ||||||  || |||||||||||||||||||||    
T  4149051 ttttatgtcatctcatatttataaattagctcaaccagtaattttaccaaacactgcaaatt 4149112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 79 - 140
Target Start/End: Complemental strand, 34812743 - 34812682
Alignment:
Q  79 ttttatgtcatttcatatttataagtttgttcaaccgttagttttaccaaacactgcaaatt 140  Q
    ||||||||||||||||||||||||| | ||||||||   | |||||| ||||||||||||||    
T  34812743 ttttatgtcatttcatatttataagctagttcaaccacaaattttactaaacactgcaaatt 34812682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 79 - 140
Target Start/End: Original strand, 39033634 - 39033695
Alignment:
Q  79 ttttatgtcatttcatatttataagtttgttcaaccgttagttttaccaaacactgcaaatt 140  Q
    |||||||||||||||||||| |||||| ||| ||||| || ||||| |||||||| ||||||    
T  39033634 ttttatgtcatttcatatttttaagttagtttaaccgataattttatcaaacactacaaatt 39033695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 79 - 164
Target Start/End: Original strand, 46881003 - 46881088
Alignment:
Q  79 ttttatgtcatttcatatttataagtttgttcaaccgttagttttaccaaacactgcaaatttaataaactagttcattcgttata 164  Q
    |||| |||||||| ||||||||||||| ||||| |||||| |||||  |||||||  ||||||||| |||||| | ||||| ||||    
T  46881003 ttttttgtcattttatatttataagttagttcagccgttaattttattaaacactataaatttaatcaactagcttattcgctata 46881088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 133
Target Start/End: Original strand, 17896159 - 17896223
Alignment:
Q  69 aatatataatttttatgtcatttcatatttataagtttgttcaaccgttagttttaccaaacact 133  Q
    |||||||  ||||||||| |||||| ||||||||||||||||| |||||| ||| | ||||||||    
T  17896159 aatatattttttttatgttatttcaaatttataagtttgttcagccgttaatttcatcaaacact 17896223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 133
Target Start/End: Complemental strand, 17425642 - 17425592
Alignment:
Q  83 atgtcatttcatatttataagtttgttcaaccgttagttttaccaaacact 133  Q
    |||||||||||||||||||||||  |||||||  || ||||||||||||||    
T  17425642 atgtcatttcatatttataagttacttcaaccactaattttaccaaacact 17425592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 131
Target Start/End: Original strand, 21191203 - 21191277
Alignment:
Q  57 aaacattaactaaatatataatttttatgtcatttcatatttataagtttgttcaaccgttagttttaccaaaca 131  Q
    ||||| ||| |||||||||||||||||||| ||| |||| |||||| || | ||||||  || ||||||||||||    
T  21191203 aaacaataattaaatatataatttttatgttattccatacttataaattagctcaacctctaattttaccaaaca 21191277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 133
Target Start/End: Original strand, 22431462 - 22431516
Alignment:
Q  79 ttttatgtcatttcatatttataagtttgttcaaccgttagttttaccaaacact 133  Q
    ||||||||||||| ||||||||||||| ||| ||||  || ||||||||||||||    
T  22431462 ttttatgtcattttatatttataagttagttgaaccactaattttaccaaacact 22431516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 78 - 144
Target Start/End: Original strand, 33890266 - 33890332
Alignment:
Q  78 tttttatgtcatttcatatttataagtttgttcaaccgttagttttaccaaacactgcaaatttaat 144  Q
    ||||||| || ||||||||||||||| | ||||||| |||| ||||| |||||| | ||||||||||    
T  33890266 tttttatatcctttcatatttataagatagttcaacagttaattttatcaaacattacaaatttaat 33890332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 133
Target Start/End: Complemental strand, 35580416 - 35580362
Alignment:
Q  79 ttttatgtcatttcatatttataagtttgttcaaccgttagttttaccaaacact 133  Q
    ||||||||||||| || |||||||| | ||| |||||||| ||||||||||||||    
T  35580416 ttttatgtcattttatgtttataagctagttgaaccgttaattttaccaaacact 35580362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 78 - 144
Target Start/End: Original strand, 36452842 - 36452908
Alignment:
Q  78 tttttatgtcatttcatatttataagtttgttcaaccgttagttttaccaaacactgcaaatttaat 144  Q
    |||| ||||||||||||||||||||||| |||| ||| |||  |||||||||||  |||||| ||||    
T  36452842 ttttgatgtcatttcatatttataagttagttcgaccattaactttaccaaacatagcaaatataat 36452908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 78 - 140
Target Start/End: Original strand, 39276510 - 39276572
Alignment:
Q  78 tttttatgtcatttcatatttataagtttgttcaaccgttagttttaccaaacactgcaaatt 140  Q
    |||||||||||||| | ||||||||| | ||||||||  || |||||||||||||| ||||||    
T  39276510 tttttatgtcatttaagatttataagctagttcaaccactaattttaccaaacactacaaatt 39276572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 125
Target Start/End: Original strand, 25886112 - 25886165
Alignment:
Q  72 atataatttttatgtcatttcatatttataagtttgttcaaccgttagttttac 125  Q
    ||||| ||||||||||||||||||| |||||| | |||||||| ||| ||||||    
T  25886112 atatattttttatgtcatttcatatctataagctagttcaaccattaattttac 25886165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 104
Target Start/End: Original strand, 39773815 - 39773852
Alignment:
Q  67 taaatatataatttttatgtcatttcatatttataagt 104  Q
    |||||||||| |||||||||||||| ||||||||||||    
T  39773815 taaatatatattttttatgtcattttatatttataagt 39773852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 150
Target Start/End: Original strand, 41173915 - 41173984
Alignment:
Q  81 ttatgtcatttcatatttataagtttgttcaaccgttagttttaccaaacactgcaaatttaataaacta 150  Q
    ||||||||||||||||||| ||| | |||||| || || |||||||||||| | |||||| ||| |||||    
T  41173915 ttatgtcatttcatatttacaagctagttcaatcgataattttaccaaacaatacaaattcaatcaacta 41173984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 133
Target Start/End: Original strand, 49262794 - 49262871
Alignment:
Q  56 taaacattaactaaatatataatttttatgtcatttcatatttataagtttgttcaaccgttagttttaccaaacact 133  Q
    |||| ||||| ||||||||| ||||| ||||||||| | ||||| |||||  ||||| | ||| ||||||||||||||    
T  49262794 taaatattaattaaatatatcattttcatgtcattttacatttacaagttaattcaatcattaattttaccaaacact 49262871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 115
Target Start/End: Original strand, 50812928 - 50812976
Alignment:
Q  67 taaatatataatttttatgtcatttcatatttataagtttgttcaaccg 115  Q
    ||||||||| | ||||||||||||| ||||||||||| | |||||||||    
T  50812928 taaatatattacttttatgtcattttatatttataagatagttcaaccg 50812976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 144
Target Start/End: Complemental strand, 52986427 - 52986363
Alignment:
Q  80 tttatgtcatttcatatttataagtttgttcaaccgttagttttaccaaacactgcaaatttaat 144  Q
    |||| ||||||||||||||| ||| |  |||||||| || |||||||| ||||| ||||||||||    
T  52986427 tttaggtcatttcatatttagaagctacttcaaccgctaattttaccatacactacaaatttaat 52986363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 56 - 140
Target Start/End: Original strand, 166714 - 166798
Alignment:
Q  56 taaacattaactaaatatataatttttatgtcatttcatatttataagtttgttcaaccgttagttttaccaaacactgcaaatt 140  Q
    |||||||| | ||||||||| |||| |||||||||||||||||||||| | ||||||||| || |||||||||||||| ||||||    
T  166714 taaacattcattaaatatatcatttctatgtcatttcatatttataagctagttcaaccgctaattttaccaaacactacaaatt 166798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 8e-18; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 78 - 144
Target Start/End: Original strand, 35058682 - 35058748
Alignment:
Q  78 tttttatgtcatttcatatttataagtttgttcaaccgttagttttaccaaacactgcaaatttaat 144  Q
    |||||||||||||||||||||||||| | ||||||||| || |||||||||||||| ||||||||||    
T  35058682 tttttatgtcatttcatatttataaggtagttcaaccgctaattttaccaaacactacaaatttaat 35058748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 56 - 140
Target Start/End: Complemental strand, 3949729 - 3949645
Alignment:
Q  56 taaacattaactaaatatataatttttatgtcatttcatatttataagtttgttcaaccgttagttttaccaaacactgcaaatt 140  Q
    |||| |||||||||| ||||  ||||||||||||||||||||||||| || |||||| || || |||||||||||||| ||||||    
T  3949729 taaatattaactaaacatatcttttttatgtcatttcatatttataaattagttcaaacgctaattttaccaaacactacaaatt 3949645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 89 - 140
Target Start/End: Complemental strand, 31795410 - 31795359
Alignment:
Q  89 tttcatatttataagtttgttcaaccgttagttttaccaaacactgcaaatt 140  Q
    ||||||||||||||| | ||||||||||||||||||||||||||| ||||||    
T  31795410 tttcatatttataagctagttcaaccgttagttttaccaaacactacaaatt 31795359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 79 - 140
Target Start/End: Original strand, 3160987 - 3161048
Alignment:
Q  79 ttttatgtcatttcatatttataagtttgttcaaccgttagttttaccaaacactgcaaatt 140  Q
    ||||||||||||||||||||||| | | |||||| ||||| |||||||||||||| ||||||    
T  3160987 ttttatgtcatttcatatttatatgctagttcaaacgttaattttaccaaacactacaaatt 3161048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 78 - 151
Target Start/End: Complemental strand, 28870541 - 28870468
Alignment:
Q  78 tttttatgtcatttcatatttataagtttgttcaaccgttagttttaccaaacactgcaaatttaataaactag 151  Q
    ||||||||| ||||||| |||||||| | ||||||| |||| ||||||||||||||  ||||| ||||||||||    
T  28870541 tttttatgtaatttcatttttataagctagttcaactgttaattttaccaaacactaaaaattcaataaactag 28870468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 56 - 140
Target Start/End: Complemental strand, 30173490 - 30173406
Alignment:
Q  56 taaacattaactaaatatataatttttatgtcatttcatatttataagtttgttcaaccgttagttttaccaaacactgcaaatt 140  Q
    |||| ||||| ||||||||| ||||||||||||||||||||||||||  |  |||||||| || ||||| |||||| | ||||||    
T  30173490 taaagattaattaaatatattatttttatgtcatttcatatttataaactacttcaaccgctaattttaacaaacattacaaatt 30173406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 61 - 140
Target Start/End: Original strand, 15801269 - 15801346
Alignment:
Q  61 attaactaaatatataatttttatgtcatttcatatttataagtttgttcaaccgttagttttaccaaacactgcaaatt 140  Q
    ||||| ||||||||| | ||||||||||||||||||||||||| || ||||| || || |||||||||||| ||||||||    
T  15801269 attaattaaatatatcagttttatgtcatttcatatttataag-ttattcaatcg-taattttaccaaacattgcaaatt 15801346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 56 - 103
Target Start/End: Complemental strand, 22593599 - 22593552
Alignment:
Q  56 taaacattaactaaatatataatttttatgtcatttcatatttataag 103  Q
    |||| ||||| |||||||||| ||||||||||||||||||||||||||    
T  22593599 taaatattaattaaatatatattttttatgtcatttcatatttataag 22593552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 140
Target Start/End: Complemental strand, 1714108 - 1714046
Alignment:
Q  78 tttttatgtcatttcatatttataagtttgttcaaccgttagttttaccaaacactgcaaatt 140  Q
    |||||||||||||||||||||||||  |  |||||| |||| |||||||||||||| ||||||    
T  1714108 tttttatgtcatttcatatttataaactacttcaacggttaattttaccaaacactacaaatt 1714046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 140
Target Start/End: Complemental strand, 23908900 - 23908830
Alignment:
Q  70 atatataatttttatgtcatttcatatttataagtttgttcaaccgttagttttaccaaacactgcaaatt 140  Q
    |||||| ||||||||||||||||||||||||||| | ||||||||  || ||| |||||||| | ||||||    
T  23908900 atatatcatttttatgtcatttcatatttataagctagttcaaccactaatttcaccaaacattacaaatt 23908830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 74 - 140
Target Start/End: Original strand, 40942413 - 40942479
Alignment:
Q  74 ataatttttatgtcatttcatatttataagtttgttcaaccgttagttttaccaaacactgcaaatt 140  Q
    |||||||||||||||||| |||||| | |||| ||||||||| || |||||||||||| | ||||||    
T  40942413 ataatttttatgtcattttatatttgtcagttagttcaaccgctaattttaccaaacaattcaaatt 40942479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 82 - 151
Target Start/End: Original strand, 32348407 - 32348476
Alignment:
Q  82 tatgtcatttcatatttataagtttgttcaaccgttagttttaccaaacactgcaaatttaataaactag 151  Q
    |||||||||||| ||||||||| | | ||||||| || |||||||||||||| |||||| ||| ||||||    
T  32348407 tatgtcatttcaaatttataagctagctcaaccgctaattttaccaaacactacaaattcaatcaactag 32348476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 78 - 131
Target Start/End: Complemental strand, 40856677 - 40856624
Alignment:
Q  78 tttttatgtcatttcatatttataagtttgttcaaccgttagttttaccaaaca 131  Q
    ||||||| |||||||||||||||||||| ||||||||| || ||||| ||||||    
T  40856677 tttttatatcatttcatatttataagttagttcaaccgctaattttatcaaaca 40856624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 78 - 153
Target Start/End: Complemental strand, 38322043 - 38321968
Alignment:
Q  78 tttttatgtcatttcatatttataagtttgttcaaccgttagttttaccaaacactgcaaatttaataaactagtt 153  Q
    |||||||||| |||||||||||| |||| | ||  |||||| |||||||||||||| |||||| ||  ||||||||    
T  38322043 tttttatgtcttttcatatttatcagttaggtcggccgttaattttaccaaacactacaaattcaaacaactagtt 38321968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 153
Target Start/End: Complemental strand, 4372865 - 4372795
Alignment:
Q  83 atgtcatttcatatttataagtttgttcaaccgttagttttaccaaacactgcaaatttaataaactagtt 153  Q
    ||||||||||||||||||||||| ||||||||| || | |||  ||||||| ||| || |||||| |||||    
T  4372865 atgtcatttcatatttataagttagttcaaccgctaatcttagaaaacactccaagttcaataaattagtt 4372795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 129
Target Start/End: Original strand, 1415860 - 1415933
Alignment:
Q  56 taaacattaactaaatatataatttttatgtcatttcatatttataagtttgttcaaccgttagttttaccaaa 129  Q
    |||||||| | |||||||||  |||||||||||||||| ||||||||| | ||| ||||| || ||||| ||||    
T  1415860 taaacattcattaaatatatcttttttatgtcatttcacatttataagctagtttaaccgctaattttatcaaa 1415933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 140
Target Start/End: Complemental strand, 11337318 - 11337245
Alignment:
Q  67 taaatatataatttttatgtcatttcatatttataagtttgttcaaccgttagttttaccaaacactgcaaatt 140  Q
    |||| |||| |||||||||||||||| |||| ||||  | ||||||| |  | |||||||||||||||||||||    
T  11337318 taaaaatatcatttttatgtcatttcgtattaataaactagttcaactgcaaattttaccaaacactgcaaatt 11337245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 140
Target Start/End: Complemental strand, 11495337 - 11495264
Alignment:
Q  67 taaatatataatttttatgtcatttcatatttataagtttgttcaaccgttagttttaccaaacactgcaaatt 140  Q
    |||| |||| |||||||||||||||| |||| ||||  | ||||||| |  | |||||||||||||||||||||    
T  11495337 taaaaatatcatttttatgtcatttcgtattaataaactagttcaactgcaaattttaccaaacactgcaaatt 11495264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 78 - 181
Target Start/End: Original strand, 17902785 - 17902888
Alignment:
Q  78 tttttatgtcatttcatatttataagtttgttcaaccgttagttttaccaaacactgcaaatttaataaactagttcattcgttatacactaacttatca 177  Q
    ||||||||||| | |||||||||||| | ||||||| | ||||||||||||||||| |||||||||| |||||||| || |  ||||  ||| |||||||    
T  17902785 tttttatgtcaatacatatttataagctagttcaactgctagttttaccaaacactacaaatttaatcaactagtttatcctctataagctagcttatca 17902884  T
Q  178 gata 181  Q
    ||||    
T  17902885 gata 17902888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 61 - 140
Target Start/End: Original strand, 17259587 - 17259666
Alignment:
Q  61 attaactaaatatataatttttatgtcatttcatatttataagtttgttcaaccgttagttttaccaaacactgcaaatt 140  Q
    ||||| |||||||||  |||||||||||||||||| ||||||| | ||||||||| || |||||| || |||||||||||    
T  17259587 attaattaaatatatcttttttatgtcatttcatacttataagctagttcaaccgctaattttactaaccactgcaaatt 17259666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 78 - 140
Target Start/End: Original strand, 31677291 - 31677353
Alignment:
Q  78 tttttatgtcatttcatatttataagtttgttcaaccgttagttttaccaaacactgcaaatt 140  Q
    |||| |||||||||||||||| |||| | ||||||||| |||||||||||||||||| |||||    
T  31677291 ttttgatgtcatttcatatttgtaagctagttcaaccgctagttttaccaaacactgtaaatt 31677353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 67 - 140
Target Start/End: Original strand, 2942055 - 2942128
Alignment:
Q  67 taaatatataatttttatgtcatttcatatttataagtttgttcaaccgttagttttaccaaacactgcaaatt 140  Q
    ||||||||| | ||||||||||||| ||||||||||||| ||||||||  || ||||||||||| || ||||||    
T  2942055 taaatatatcacttttatgtcattttatatttataagttagttcaaccactaattttaccaaaccctacaaatt 2942128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 67 - 140
Target Start/End: Complemental strand, 31806673 - 31806600
Alignment:
Q  67 taaatatataatttttatgtcatttcatatttataagtttgttcaaccgttagttttaccaaacactgcaaatt 140  Q
    ||||||||| | ||||||||||||||||||||||||| | |||||| | ||| |||||||||||| | ||||||    
T  31806673 taaatatatcacttttatgtcatttcatatttataagatagttcaatccttaattttaccaaacaatacaaatt 31806600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 68 - 140
Target Start/End: Complemental strand, 41892849 - 41892777
Alignment:
Q  68 aaatatataatttttatgtcatttcatatttataagtttgttcaaccgttagttttaccaaacactgcaaatt 140  Q
    ||||||||| ||||||||  |||||||||||||||| | ||| |||||||| || ||||||||||| ||||||    
T  41892849 aaatatatattttttatggtatttcatatttataagctagtttaaccgttaattataccaaacactacaaatt 41892777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 61 - 100
Target Start/End: Original strand, 35785574 - 35785613
Alignment:
Q  61 attaactaaatatataatttttatgtcatttcatatttat 100  Q
    ||||| ||||||||| ||||||||||||||||||||||||    
T  35785574 attaaataaatatattatttttatgtcatttcatatttat 35785613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 129
Target Start/End: Original strand, 31408745 - 31408795
Alignment:
Q  79 ttttatgtcatttcatatttataagtttgttcaaccgttagttttaccaaa 129  Q
    ||||||||||||| |||||||| |||| ||| |||||||| ||||||||||    
T  31408745 ttttatgtcattttatatttattagttagttgaaccgttaattttaccaaa 31408795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 126
Target Start/End: Complemental strand, 1621486 - 1621438
Alignment:
Q  78 tttttatgtcatttcatatttataagtttgttcaaccgttagttttacc 126  Q
    |||||||||||||||||||||||||| |  |||||||| || |||||||    
T  1621486 tttttatgtcatttcatatttataagctacttcaaccgctaattttacc 1621438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 118
Target Start/End: Complemental strand, 7153724 - 7153684
Alignment:
Q  78 tttttatgtcatttcatatttataagtttgttcaaccgtta 118  Q
    ||||||||||||||||||||||||| ||  |||||||||||    
T  7153724 tttttatgtcatttcatatttataaattaattcaaccgtta 7153684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 78 - 156
Target Start/End: Complemental strand, 13438391 - 13438313
Alignment:
Q  78 tttttatgtcatttcatatttataagtttgttcaaccgttagttttaccaaacactgcaaatttaataaactagttcat 156  Q
    |||||||||||||| ||||||||||||| ||| ||||| || ||| |||||||||| |||||||||||| |||| ||||    
T  13438391 tttttatgtcattttatatttataagttagtttaaccgctaatttaaccaaacactacaaatttaataagctagctcat 13438313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 61 - 146
Target Start/End: Original strand, 31740563 - 31740647
Alignment:
Q  61 attaactaaatatataatttttatgtcatttcatatttataagtttgttcaaccgttagttttaccaaacactgcaaatttaataa 146  Q
    ||||| ||||||||| | |||||||| ||||||||||||||||||  ||||| || || ||||||||||||||||||||| |||||    
T  31740563 attaattaaatatattagttttatgttatttcatatttataagttaattcaatcg-taattttaccaaacactgcaaattcaataa 31740647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 103
Target Start/End: Original strand, 42967867 - 42967909
Alignment:
Q  61 attaactaaatatataatttttatgtcatttcatatttataag 103  Q
    ||||||||||||||| || ||||||||||||||||||||||||    
T  42967867 attaactaaatatattatctttatgtcatttcatatttataag 42967909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 61 - 138
Target Start/End: Original strand, 7379533 - 7379609
Alignment:
Q  61 attaactaaatatataatttttatgtcatttcatatttataagtttgttcaaccgttagttttaccaaacactgcaaa 138  Q
    ||||| ||||||||| | ||||||||||||| |||||||||||||  ||||| || || |||||||||||| ||||||    
T  7379533 attaattaaatatatcaattttatgtcattttatatttataagttaattcaatcg-taattttaccaaacattgcaaa 7379609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 78 - 129
Target Start/End: Original strand, 883879 - 883930
Alignment:
Q  78 tttttatgtcatttcatatttataagtttgttcaaccgttagttttaccaaa 129  Q
    |||||||||||||||||||||||||| |  ||||||||||| ||||| ||||    
T  883879 tttttatgtcatttcatatttataagctacttcaaccgttaattttatcaaa 883930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 78 - 129
Target Start/End: Original strand, 1243208 - 1243259
Alignment:
Q  78 tttttatgtcatttcatatttataagtttgttcaaccgttagttttaccaaa 129  Q
    |||||||||||||||||||||||||| |  ||||||||||| ||||| ||||    
T  1243208 tttttatgtcatttcatatttataagctacttcaaccgttaattttatcaaa 1243259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 89 - 140
Target Start/End: Original strand, 31627636 - 31627687
Alignment:
Q  89 tttcatatttataagtttgttcaaccgttagttttaccaaacactgcaaatt 140  Q
    ||||||||||||||||| ||||||| |||| ||||| |||||||| ||||||    
T  31627636 tttcatatttataagttagttcaacggttaattttatcaaacactacaaatt 31627687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 78 - 133
Target Start/End: Original strand, 45672999 - 45673054
Alignment:
Q  78 tttttatgtcatttcatatttataagtttgttcaaccgttagttttaccaaacact 133  Q
    |||||||||||||| | ||||||||||| |||| |||| || ||||||||||||||    
T  45672999 tttttatgtcattttacatttataagttagttctaccgctaattttaccaaacact 45673054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 78 - 140
Target Start/End: Complemental strand, 19683518 - 19683456
Alignment:
Q  78 tttttatgtcatttcatatttataagtttgttcaaccgttagttttaccaaacactgcaaatt 140  Q
    ||||| ||||||||||||||||| ||||  |||||||| || ||||| |||||||| ||||||    
T  19683518 tttttttgtcatttcatatttattagttacttcaaccgctatttttatcaaacactacaaatt 19683456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 118
Target Start/End: Complemental strand, 34837131 - 34837090
Alignment:
Q  77 atttttatgtcatttcatatttataagtttgttcaaccgtta 118  Q
    ||||||||||||||| |||||||||||||  |||||||||||    
T  34837131 atttttatgtcattttatatttataagttacttcaaccgtta 34837090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 129
Target Start/End: Original strand, 24838564 - 24838615
Alignment:
Q  77 atttttatgtcatttcatatttataagtttgttcaaccgttagttttaccaaa 129  Q
    |||||||||| |||||||||||||||||| | |||||||||| ||||| ||||    
T  24838564 atttttatgttatttcatatttataagttcg-tcaaccgttaattttatcaaa 24838615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 131
Target Start/End: Original strand, 36407911 - 36407963
Alignment:
Q  79 ttttatgtcatttcatatttataagtttgttcaaccgttagttttaccaaaca 131  Q
    ||||||||||||| |  |||||||||| ||| |||||||| ||||||||||||    
T  36407911 ttttatgtcattttacgtttataagttagttgaaccgttaattttaccaaaca 36407963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 56 - 140
Target Start/End: Original strand, 29052673 - 29052756
Alignment:
Q  56 taaacattaactaaatatataatttttatgtcatttcatatttataagtttgttcaaccgttagttttaccaaacactgcaaatt 140  Q
    |||| ||||| |||||||||| |||||||||||||||||||||||||| | | | ||||| |  |||||||||||||||||||||    
T  29052673 taaatattaattaaatatata-tttttatgtcatttcatatttataagctaggtgaaccgcttattttaccaaacactgcaaatt 29052756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 79 - 138
Target Start/End: Original strand, 1288436 - 1288495
Alignment:
Q  79 ttttatgtcatttcatatttataagtttgttcaaccgttagttttaccaaacactgcaaa 138  Q
    |||||||||||||||||||||||||||  ||||||||||| ||||| |||||||| ||||    
T  1288436 ttttatgtcatttcatatttataagttatttcaaccgttaattttatcaaacactacaaa 1288495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 56 - 130
Target Start/End: Original strand, 29490202 - 29490276
Alignment:
Q  56 taaacattaactaaatatataatttttatgtcatttcatatttataagtttgttcaaccgttagttttaccaaac 130  Q
    |||| |||| |||||||||| |||||||| ||||||||||||||||| ||  ||||||| ||| |||||||||||    
T  29490202 taaatattacctaaatatattatttttatatcatttcatatttataaattacttcaaccattaattttaccaaac 29490276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 67 - 139
Target Start/End: Original strand, 9195627 - 9195700
Alignment:
Q  67 taaatatataatttttatgtcatttcatatttataagtttgttcaa-ccgttagttttaccaaacactgcaaat 139  Q
    ||||||||  |||||||||||||||||||||||||||   |||||| || ||| ||||||||||||||||||||    
T  9195627 taaatataccatttttatgtcatttcatatttataagcgagttcaatcctttaattttaccaaacactgcaaat 9195700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 103
Target Start/End: Original strand, 9195839 - 9195875
Alignment:
Q  67 taaatatataatttttatgtcatttcatatttataag 103  Q
    ||||||||| |||||||||||||||||||||||||||    
T  9195839 taaatatatcatttttatgtcatttcatatttataag 9195875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 78 - 140
Target Start/End: Original strand, 34544421 - 34544483
Alignment:
Q  78 tttttatgtcatttcatatttataagtttgttcaaccgttagttttaccaaacactgcaaatt 140  Q
    |||||||||||||||||||||||||| | ||||||||  || || || |||||||| ||||||    
T  34544421 tttttatgtcatttcatatttataagctagttcaaccactaattgtatcaaacactacaaatt 34544483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 131
Target Start/End: Complemental strand, 2046107 - 2046043
Alignment:
Q  67 taaatatataatttttatgtcatttcatatttataagtttgttcaaccgttagttttaccaaaca 131  Q
    ||||||||| | || ||||| ||||||||||||||||||  |||||| | || ||||||||||||    
T  2046107 taaatatatcaattctatgttatttcatatttataagttaattcaacagctaattttaccaaaca 2046043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 99
Target Start/End: Original strand, 2255673 - 2255705
Alignment:
Q  67 taaatatataatttttatgtcatttcatattta 99  Q
    ||||||||| |||||||||||||||||||||||    
T  2255673 taaatatatcatttttatgtcatttcatattta 2255705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 140
Target Start/End: Complemental strand, 2748351 - 2748295
Alignment:
Q  84 tgtcatttcatatttataagtttgttcaaccgttagttttaccaaacactgcaaatt 140  Q
    |||||||||||||||||||  | |||||||||||| |||||  |||||||| |||||    
T  2748351 tgtcatttcatatttataaactagttcaaccgttaattttattaaacactgtaaatt 2748295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 61 - 140
Target Start/End: Complemental strand, 18084965 - 18084887
Alignment:
Q  61 attaactaaatatataatttttatgtcatttcatatttataagtttgttcaaccgttagttttaccaaacactgcaaatt 140  Q
    ||||| ||||||||| | ||||||||||||| |||||||||||||  ||||| || || |||||||||||||||||||||    
T  18084965 attaattaaatatatcagttttatgtcattttatatttataagttaattcaatcg-taattttaccaaacactgcaaatt 18084887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 78 - 146
Target Start/End: Original strand, 22838258 - 22838326
Alignment:
Q  78 tttttatgtcatttcatatttataagtttgttcaaccgttagttttaccaaacactgcaaatttaataa 146  Q
    ||||||||| | |||||||||||||||||||||||||| || ||||| |||| ||| |||||| |||||    
T  22838258 tttttatgtgacttcatatttataagtttgttcaaccgctaattttatcaaagactacaaattcaataa 22838326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 79 - 133
Target Start/End: Complemental strand, 52594815 - 52594761
Alignment:
Q  79 ttttatgtcatttcatatttataagtttgttcaaccgttagttttaccaaacact 133  Q
    ||||||||||||| ||||||||||||  ||| |||||||| ||||||||||||||    
T  52594815 ttttatgtcattttatatttataagtcagttgaaccgttaattttaccaaacact 52594761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 61 - 114
Target Start/End: Original strand, 1742791 - 1742844
Alignment:
Q  61 attaactaaatatataatttttatgtcatttcatatttataagtttgttcaacc 114  Q
    ||||| ||||||||| |||||||| ||||||||||||||||| || ||||||||    
T  1742791 attaattaaatatatgatttttatatcatttcatatttataaattagttcaacc 1742844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 61 - 150
Target Start/End: Complemental strand, 9198134 - 9198045
Alignment:
Q  61 attaactaaatatataatttttatgtcatttcatatttataagtttgttcaaccgttagttttaccaaacactgcaaatttaataaacta 150  Q
    ||||| ||||||||| ||||||||||||||||||||||| ||  | |||||||   || |||||||||||||| || ||| ||| |||||    
T  9198134 attaattaaatatattatttttatgtcatttcatatttacaaactagttcaacaactaattttaccaaacactacagattcaatcaacta 9198045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 77 - 146
Target Start/End: Complemental strand, 20873135 - 20873066
Alignment:
Q  77 atttttatgtcatttcatatttataagtttgttcaaccgttagttttaccaaacactgcaaatttaataa 146  Q
    |||||||||||||||||||| ||||||||  |||||||| |  ||||||||||||||  ||||| |||||    
T  20873135 atttttatgtcatttcatatgtataagttacttcaaccgctgattttaccaaacactaaaaattcaataa 20873066  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 114
Target Start/End: Complemental strand, 25290208 - 25290162
Alignment:
Q  68 aaatatataatttttatgtcatttcatatttataagtttgttcaacc 114  Q
    |||||||| | |||||||||||||||||||||||||||  |||||||    
T  25290208 aaatatatcacttttatgtcatttcatatttataagttacttcaacc 25290162  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 102
Target Start/End: Complemental strand, 32326105 - 32326059
Alignment:
Q  56 taaacattaactaaatatataatttttatgtcatttcatatttataa 102  Q
    |||| ||||| ||||||||| ||||||||||||||||||| ||||||    
T  32326105 taaatattaattaaatatatcatttttatgtcatttcataattataa 32326059  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 103
Target Start/End: Complemental strand, 36878993 - 36878951
Alignment:
Q  61 attaactaaatatataatttttatgtcatttcatatttataag 103  Q
    ||||| |||||||||| |||||||||||||||||||| |||||    
T  36878993 attaattaaatatatattttttatgtcatttcatattgataag 36878951  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 133
Target Start/End: Original strand, 39720083 - 39720137
Alignment:
Q  79 ttttatgtcatttcatatttataagtttgttcaaccgttagttttaccaaacact 133  Q
    ||||||||||||| |||||||| || | ||| ||||| |||||||||||||||||    
T  39720083 ttttatgtcattttatatttatcagctagttgaaccgctagttttaccaaacact 39720137  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 132
Target Start/End: Original strand, 11042063 - 11042108
Alignment:
Q  87 catttcatatttataagtttgttcaaccgttagttttaccaaacac 132  Q
    ||||||||||||||||||| ||||||||  || |||||||||||||    
T  11042063 catttcatatttataagttagttcaaccactaattttaccaaacac 11042108  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 147
Target Start/End: Complemental strand, 27696325 - 27696256
Alignment:
Q  78 tttttatgtcatttcatatttataagtttgttcaaccgttagttttaccaaacactgcaaatttaataaa 147  Q
    ||||||||||||||||||| || |||||  ||||||| ||| ||||| |||| ||| |||||| ||||||    
T  27696325 tttttatgtcatttcatatataaaagttaattcaaccattaattttatcaaatactacaaattcaataaa 27696256  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 123
Target Start/End: Original strand, 28956245 - 28956289
Alignment:
Q  79 ttttatgtcatttcatatttataagtttgttcaaccgttagtttt 123  Q
    |||||||||||||||||||||||| || |||||| ||||| ||||    
T  28956245 ttttatgtcatttcatatttataaattagttcaatcgttaatttt 28956289  T

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Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 129
Target Start/End: Complemental strand, 33282398 - 33282330
Alignment:
Q  61 attaactaaatatataatttttatgtcatttcatatttataagtttgttcaaccgttagttttaccaaa 129  Q
    ||||| ||||||||| | |||||||||||||||||||| ||| ||  |||||| | || ||||||||||    
T  33282398 attaattaaatatatcacttttatgtcatttcatatttgtaacttaattcaacagctaattttaccaaa 33282330  T

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Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 146
Target Start/End: Original strand, 47108978 - 47109046
Alignment:
Q  78 tttttatgtcatttcatatttataagtttgttcaaccgttagttttaccaaacactgcaaatttaataa 146  Q
    ||||||||||||||||||||||| |  | ||| |||||||| |||| ||||||||  ||| ||||||||    
T  47108978 tttttatgtcatttcatatttattatctagtttaaccgttaatttttccaaacacaacaagtttaataa 47109046  T

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Target: scaffold0536 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 105
Target Start/End: Original strand, 4496 - 4540
Alignment:
Q  61 attaactaaatatataatttttatgtcatttcatatttataagtt 105  Q
    ||||| ||||||||| | ||||||||||||||||||||| |||||    
T  4496 attaattaaatatatcagttttatgtcatttcatatttacaagtt 4540  T

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Target: scaffold0004 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 139
Target Start/End: Original strand, 237827 - 237887
Alignment:
Q  79 ttttatgtcatttcatatttataagtttgttcaaccgttagttttaccaaacactgcaaat 139  Q
    ||||||||||||  | |||||| | || |||||||||||| |||||||||||||| |||||    
T  237827 ttttatgtcattgtagatttatcaattagttcaaccgttaattttaccaaacacttcaaat 237887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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