View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0671_low_27 (Length: 277)
Name: NF0671_low_27
Description: NF0671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0671_low_27 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 30 - 277
Target Start/End: Original strand, 7423603 - 7423850
Alignment:
| Q |
30 |
aaaacagcctcatgttcaactagctaatgctacgatagcttgtcacttgtagaaagtgagaggcacaaacaaacacgaattaacttgatcaaaacgaata |
129 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7423603 |
aaaacagcctcatgttcaactagctaatgctaagatagcttgtcacttgtagaaagtgagaggcacaaacaaacacgaattaacttgatcaaaacgaata |
7423702 |
T |
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| Q |
130 |
catttactttatttaagcaatactacaaagtaaacagttagtaatcactttccacaggactcaaaatgaaatgacatcataacaatgagatgaaataata |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |
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| T |
7423703 |
catttactttatttaagcaatactacaaagtaaacagttactaatcactttccacaggactcaaaatgaaatgacatcataacaatgaaatgagataata |
7423802 |
T |
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| Q |
230 |
aaaagtctatggttaattattcatgtagcacgtgaagcgccccaaaaa |
277 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7423803 |
aaaagtctatggttaattattcatgtagcacgtgaagcgccccaaaaa |
7423850 |
T |
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