View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0671_low_3 (Length: 747)

Name: NF0671_low_3
Description: NF0671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0671_low_3
NF0671_low_3
[»] chr8 (9 HSPs)
chr8 (30-735)||(43907487-43908183)
chr8 (427-538)||(4558681-4558792)
chr8 (442-534)||(34563137-34563229)
chr8 (421-497)||(40280275-40280351)
chr8 (445-539)||(44865659-44865753)
chr8 (428-539)||(29699136-29699247)
chr8 (421-456)||(33553227-33553262)
chr8 (427-458)||(42237498-42237529)
chr8 (427-457)||(35374449-35374479)
[»] chr2 (11 HSPs)
chr2 (436-534)||(31461325-31461423)
chr2 (432-538)||(33197320-33197426)
chr2 (427-500)||(32633693-32633765)
chr2 (427-538)||(11393441-11393553)
chr2 (427-538)||(11410102-11410214)
chr2 (427-506)||(28803582-28803661)
chr2 (431-470)||(42457899-42457938)
chr2 (421-459)||(3227731-3227769)
chr2 (427-497)||(10150679-10150749)
chr2 (427-498)||(31228893-31228966)
chr2 (427-500)||(3673728-3673801)
[»] chr5 (6 HSPs)
chr5 (427-538)||(9202824-9202935)
chr5 (427-458)||(12595816-12595847)
chr5 (428-458)||(10363713-10363743)
chr5 (430-460)||(12425532-12425562)
chr5 (444-538)||(26516181-26516275)
chr5 (421-458)||(12242758-12242795)
[»] chr1 (9 HSPs)
chr1 (427-539)||(17269133-17269244)
chr1 (426-506)||(45234112-45234192)
chr1 (421-458)||(14737775-14737812)
chr1 (421-458)||(48748653-48748690)
chr1 (427-479)||(11211060-11211112)
chr1 (494-538)||(21516256-21516300)
chr1 (431-469)||(15477530-15477568)
chr1 (484-534)||(24153164-24153214)
chr1 (421-458)||(50319255-50319292)
[»] scaffold0024 (1 HSPs)
scaffold0024 (427-538)||(27459-27570)
[»] chr7 (5 HSPs)
chr7 (446-537)||(6552365-6552456)
chr7 (432-491)||(21853197-21853256)
chr7 (485-538)||(5630049-5630102)
chr7 (421-498)||(7244625-7244702)
chr7 (421-458)||(34035902-34035939)
[»] chr6 (6 HSPs)
chr6 (427-474)||(10728579-10728626)
chr6 (427-513)||(10749304-10749389)
chr6 (442-538)||(5328857-5328953)
chr6 (426-537)||(6078364-6078475)
chr6 (421-458)||(2205638-2205675)
chr6 (421-458)||(5731555-5731592)
[»] chr3 (7 HSPs)
chr3 (442-538)||(54775011-54775107)
chr3 (431-474)||(849609-849652)
chr3 (427-458)||(10101552-10101583)
chr3 (427-458)||(10212477-10212508)
chr3 (427-458)||(15304423-15304454)
chr3 (427-497)||(3182438-3182508)
chr3 (484-538)||(20874433-20874487)
[»] chr4 (3 HSPs)
chr4 (363-418)||(25487466-25487521)
chr4 (485-538)||(4684243-4684296)
chr4 (429-474)||(49803158-49803203)
[»] scaffold0590 (1 HSPs)
scaffold0590 (442-536)||(1165-1259)
[»] scaffold0275 (1 HSPs)
scaffold0275 (442-536)||(2716-2810)


Alignment Details
Target: chr8 (Bit Score: 654; Significance: 0; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 654; E-Value: 0
Query Start/End: Original strand, 30 - 735
Target Start/End: Original strand, 43907487 - 43908183
Alignment:
Q  30 gtgtccattcttctgataaggaagagcatcaaaagactcattcatctcattctgaagaattcattagcccacgagagagctttgtggaaggatcagaaga 129  Q
    ||||||||||||||||||||||||||| ||||| ||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43907487 gtgtccattcttctgataaggaagagcgtcaaaggactca---------ttctgaagaattcattagcccacgagagagctttgtggaaggatcagaaga 43907577  T
Q  130 aaatgattgttccgaaacattgtctatgcatcaatcgccgcaagtttctgacttcgaaaataaagagatgggagcgtttcaagaaaactttcaatcaaga 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  43907578 aaatgattgttccgaaacattgtctatgcatcaatcgccgcaagtttctgacttcgaaaataaagaggtgggagcgtttcaagaaaactttcaatcaaga 43907677  T
Q  230 aatgttgttgattctgttccaaattatgttgaatttgaaagcagccccacctcttccatgatcaacctgaacctatataaaagtaacagacaccataacg 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43907678 aatgttgttgattctgttccaaattatgttgaatttgaaagcagccccacctcttccatgatcaacctgaacctatataaaagtaacagacaccataacg 43907777  T
Q  330 gtatttcacaccatatctcattttataatctatactataggcctattttgattaactcatttgagtttatctattgacataaacacttgacatagcttat 429  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43907778 gtatttcacaccgtatctcattttataatctatactataggcctattttgattaactcatttgagtttatctattgacataaacacttgacatagcttat 43907877  T
Q  430 gaaaacaatttaactttattttatcttttacgctagaaataacttgtatgtaaccacttatatgataaacatttatgatataagggtttaattaagatgt 529  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43907878 gaaaacaatttgactttattttatcttttacgctagaaataacttgtatgtaaccacttatatgataaacatttatgatataagggtttaattaagatgt 43907977  T
Q  530 ttatccaaatgatctctatatggtactatagtgaaacactgatttagtcatgaaattgtaatgattagagagtttagtcttgaaattaacgaaattctaa 629  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43907978 ttatccaaatgatctctatatggtactatagtgaaacactgatttagtcatgaaattgtaatgattagagagtttagtcttgaaattaacgaaattctaa 43908077  T
Q  630 aatgatcctcaatcacatttgtactttaggacttcaagactaaattgattgatccaaaaatactaattgaagatttttaatttcactcattatggtaatt 729  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43908078 aatgatcctcaatcacatttgtactttaggacttcaagactaaattgattgatccaaaaatactaattgaagatttttaatttcactcattatggtaatt 43908177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 427 - 538
Target Start/End: Complemental strand, 4558792 - 4558681
Alignment:
Q  427 tatgaaaacaatttaactttattttatcttttacgctagaaataacttgtatgtaaccacttatatgataaacatttatgatataagggtttaattaaga 526  Q
    |||||||| ||||||||||||||||||||||||   |||||||| ||| ||  ||| |||||| || |||||| |||||| |||||| |  ||||||||     
T  4558792 tatgaaaataatttaactttattttatcttttattatagaaatagcttatacataaacacttacataataaacgtttatgctataagcgcgtaattaagt 4558693  T
Q  527 tgtttatccaaa 538  Q
    ||||||||||||    
T  4558692 tgtttatccaaa 4558681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 442 - 534
Target Start/End: Complemental strand, 34563229 - 34563137
Alignment:
Q  442 actttattttatcttttacgctagaaataacttgtatgtaaccacttatatgataaacatttatgatataagggtttaattaagatgtttatc 534  Q
    ||||||||||||| |||    |||||||||||| ||| ||| |||||||||||||||  |||||| |||||| ||||||||||| ||||||||    
T  34563229 actttattttatcctttgtcatagaaataacttatatataagcacttatatgataaatgtttatgctataagcgtttaattaagttgtttatc 34563137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 421 - 497
Target Start/End: Original strand, 40280275 - 40280351
Alignment:
Q  421 atagcttatgaaaacaatttaactttattttatcttttacgctagaaataacttgtatgtaaccacttatatgataa 497  Q
    |||||||||||||||||||| |||||||||||||||||    |||||||||||| ||| ||  ||||||||||||||    
T  40280275 atagcttatgaaaacaattttactttattttatcttttgttgtagaaataacttatatataggcacttatatgataa 40280351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 445 - 539
Target Start/End: Original strand, 44865659 - 44865753
Alignment:
Q  445 ttattttatcttttacgctagaaataacttgtatgtaaccacttatatgataaacatttatgatataagggtttaattaagatgtttatccaaat 539  Q
    |||||| ||||||| || |||||||| ||| || |||| |||||||| ||||||| || ||| ||||||  |||||||||| |||||||||||||    
T  44865659 ttatttaatcttttgcgatagaaatagcttataagtaagcacttataagataaactttaatgctataagcatttaattaagttgtttatccaaat 44865753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 428 - 539
Target Start/End: Complemental strand, 29699247 - 29699136
Alignment:
Q  428 atgaaaacaatttaactttattttatcttttacgctagaaataacttgtatgtaaccacttatatgataaacatttatgatataagggtttaattaagat 527  Q
    |||| |||| ||| |||||||||||||||||    |||||||||||||||  ||| || |||||||||||| ||||||| ||||||   |||| ||||      
T  29699247 atgacaacattttgactttattttatcttttgttatagaaataacttgtacataagcatttatatgataaatatttatgctataagcacttaactaagtc 29699148  T
Q  528 gtttatccaaat 539  Q
    ||||||||||||    
T  29699147 gtttatccaaat 29699136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 421 - 456
Target Start/End: Complemental strand, 33553262 - 33553227
Alignment:
Q  421 atagcttatgaaaacaatttaactttattttatctt 456  Q
    |||||||||||||||||||| |||||||||||||||    
T  33553262 atagcttatgaaaacaatttgactttattttatctt 33553227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 427 - 458
Target Start/End: Original strand, 42237498 - 42237529
Alignment:
Q  427 tatgaaaacaatttaactttattttatctttt 458  Q
    ||||||||||||||||||||||||||||||||    
T  42237498 tatgaaaacaatttaactttattttatctttt 42237529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 427 - 457
Target Start/End: Original strand, 35374449 - 35374479
Alignment:
Q  427 tatgaaaacaatttaactttattttatcttt 457  Q
    |||||||||||||||||||||||||||||||    
T  35374449 tatgaaaacaatttaactttattttatcttt 35374479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 436 - 534
Target Start/End: Complemental strand, 31461423 - 31461325
Alignment:
Q  436 aatttaactttattttatcttttacgctagaaataacttgtatgtaaccacttatatgataaacatttatgatataagggtttaattaagatgtttatc 534  Q
    ||||| |||||||||||||||||    |||||||| ||| ||| ||||||||||||||||| || |||||| || ||| | ||||||||| ||||||||    
T  31461423 aatttgactttattttatcttttgttatagaaatagcttatatataaccacttatatgatatacgtttatgctagaagtgcttaattaagttgtttatc 31461325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 432 - 538
Target Start/End: Original strand, 33197320 - 33197426
Alignment:
Q  432 aaacaatttaactttattttatcttttacgctagaaataacttgtatgtaaccacttatatgataaacatttatgatataagggtttaattaagatgttt 531  Q
    |||||| || |||||||| ||||||||    |||||||| ||| ||  ||| |||||||||||||| | |||||| |||||| |||||||| || |||||    
T  33197320 aaacaacttgactttattctatcttttgttatagaaatagcttatagataagcacttatatgataagcgtttatgttataagtgtttaatttagttgttt 33197419  T
Q  532 atccaaa 538  Q
    |||||||    
T  33197420 atccaaa 33197426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 427 - 500
Target Start/End: Original strand, 32633693 - 32633765
Alignment:
Q  427 tatgaaaacaatttaactttattttatcttttacgctagaaataacttgtatgtaaccacttatatgataaaca 500  Q
    |||||||||||||| | |||| |||||||||| |  |||||||||||  |||||||||| ||||||||||||||    
T  32633693 tatgaaaacaatttgattttagtttatctttt-ctatagaaataactcatatgtaaccaattatatgataaaca 32633765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 427 - 538
Target Start/End: Original strand, 11393441 - 11393553
Alignment:
Q  427 tatgaaaac-aatttaactttattttatcttttacgctagaaataacttgtatgtaaccacttatatgataaacatttatgatataagggtttaattaag 525  Q
    ||||||||| ||||| | |||||| ||||||||    |||||||| ||| ||  ||| ||||||||||||||||| || || |||||| | |||||||||    
T  11393441 tatgaaaacgaatttgaatttattatatcttttgatatagaaatagcttatagataagcacttatatgataaacacttgtgctataagtgcttaattaag 11393540  T
Q  526 atgtttatccaaa 538  Q
     ||||||||||||    
T  11393541 ctgtttatccaaa 11393553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 427 - 538
Target Start/End: Original strand, 11410102 - 11410214
Alignment:
Q  427 tatgaaaac-aatttaactttattttatcttttacgctagaaataacttgtatgtaaccacttatatgataaacatttatgatataagggtttaattaag 525  Q
    ||||||||| ||||| | |||||| ||||||||    |||||||| ||| ||  ||| ||||||||||||||||| || || |||||| | |||||||||    
T  11410102 tatgaaaacgaatttgaatttattatatcttttgatatagaaatagcttatagataagcacttatatgataaacacttgtgctataagtgcttaattaag 11410201  T
Q  526 atgtttatccaaa 538  Q
     ||||||||||||    
T  11410202 ctgtttatccaaa 11410214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 427 - 506
Target Start/End: Original strand, 28803582 - 28803661
Alignment:
Q  427 tatgaaaacaatttaactttattttatcttttacgctagaaataacttgtatgtaaccacttatatgataaacatttatg 506  Q
    ||||||| || ||| |||||||||||||||||    | |||||||||| ||| ||| |||||||||||||| ||||||||    
T  28803582 tatgaaatcagtttgactttattttatcttttgttatcgaaataacttatatataagcacttatatgataagcatttatg 28803661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 431 - 470
Target Start/End: Complemental strand, 42457938 - 42457899
Alignment:
Q  431 aaaacaatttaactttattttatcttttacgctagaaata 470  Q
    ||||||||||||||||||||||||||||||  ||||||||    
T  42457938 aaaacaatttaactttattttatcttttactatagaaata 42457899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 421 - 459
Target Start/End: Original strand, 3227731 - 3227769
Alignment:
Q  421 atagcttatgaaaacaatttaactttattttatctttta 459  Q
    |||||||||||||||||||||||||| |||||| |||||    
T  3227731 atagcttatgaaaacaatttaactttgttttatttttta 3227769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 427 - 497
Target Start/End: Complemental strand, 10150749 - 10150679
Alignment:
Q  427 tatgaaaacaatttaactttattttatcttttacgctagaaataacttgtatgtaaccacttatatgataa 497  Q
    ||||||||| ||||||| |||||||||||||||   |||||||||||| ||  ||| ||||||||| ||||    
T  10150749 tatgaaaaccatttaacgttattttatcttttattatagaaataacttatacataaacacttatataataa 10150679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 427 - 498
Target Start/End: Original strand, 31228893 - 31228966
Alignment:
Q  427 tatgaaaacaatttaactttattttatcttttacgc--tagaaataacttgtatgtaaccacttatatgataaa 498  Q
    ||||||||||||||  ||||||||||||||||  ||  |||||||||| |||   |||||||||||||||||||    
T  31228893 tatgaaaacaatttgcctttattttatcttttgagctatagaaataacatgtgcataaccacttatatgataaa 31228966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 427 - 500
Target Start/End: Complemental strand, 3673801 - 3673728
Alignment:
Q  427 tatgaaaacaatttaactttattttatcttttacgctagaaataacttgtatgtaaccacttatatgataaaca 500  Q
    ||||||||||||||||||||||||||| ||||    |||||||||||  ||  ||| ||||||||||| |||||    
T  3673801 tatgaaaacaatttaactttattttatattttgttatagaaataactaatacataagcacttatatgacaaaca 3673728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 427 - 538
Target Start/End: Original strand, 9202824 - 9202935
Alignment:
Q  427 tatgaaaacaatttaactttattttatcttttacgctagaaataacttgtatgtaaccacttat-atgataaacatttatgatataagggtttaattaag 525  Q
    |||||||||||||||||||||||||||||||| |   ||||||| ||| ||| ||| ||||||| |||||||||| || || ||||||  |  || ||||    
T  9202824 tatgaaaacaatttaactttattttatcttttgctacagaaatagcttatatataagcacttatcatgataaacacttgtgctataagc-tgcaaataag 9202922  T
Q  526 atgtttatccaaa 538  Q
    |||||||||||||    
T  9202923 atgtttatccaaa 9202935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 427 - 458
Target Start/End: Original strand, 12595816 - 12595847
Alignment:
Q  427 tatgaaaacaatttaactttattttatctttt 458  Q
    ||||||||||||||||||||||||||||||||    
T  12595816 tatgaaaacaatttaactttattttatctttt 12595847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 428 - 458
Target Start/End: Complemental strand, 10363743 - 10363713
Alignment:
Q  428 atgaaaacaatttaactttattttatctttt 458  Q
    |||||||||||||||||||||||||||||||    
T  10363743 atgaaaacaatttaactttattttatctttt 10363713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 430 - 460
Target Start/End: Complemental strand, 12425562 - 12425532
Alignment:
Q  430 gaaaacaatttaactttattttatcttttac 460  Q
    |||||||||||||||||||||||||||||||    
T  12425562 gaaaacaatttaactttattttatcttttac 12425532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 444 - 538
Target Start/End: Complemental strand, 26516275 - 26516181
Alignment:
Q  444 tttattttatcttttacgctagaaataacttgtatgtaaccacttatatgataaacatttatgatataagggtttaattaagatgtttatccaaa 538  Q
    |||||||||||||||    |||||||| ||| ||  ||| |||||||||||||| |  ||||| |||||| | ||||||||| ||||||||||||    
T  26516275 tttattttatcttttgttttagaaatagcttatacataagcacttatatgataagcgcttatgctataagcgcttaattaagttgtttatccaaa 26516181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 421 - 458
Target Start/End: Original strand, 12242758 - 12242795
Alignment:
Q  421 atagcttatgaaaacaatttaactttattttatctttt 458  Q
    |||||||||||||||||||| ||| |||||||||||||    
T  12242758 atagcttatgaaaacaatttgactctattttatctttt 12242795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 427 - 539
Target Start/End: Complemental strand, 17269244 - 17269133
Alignment:
Q  427 tatgaaaacaatttaactttattttatcttttacgctagaaataacttgtatgtaaccacttatatgataaacatttatgatataagggtttaattaaga 526  Q
    |||||||||||||| ||||||||||  |||||   ||||||||||||| ||  ||| ||||||||||| |||| |||||||||| ||  |||||| |||     
T  17269244 tatgaaaacaatttgactttattttcacttttgttctagaaataacttatacataagcacttatatga-aaacgtttatgatatcagtatttaatcaagt 17269146  T
Q  527 tgtttatccaaat 539  Q
    || ||||||||||    
T  17269145 tgcttatccaaat 17269133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 426 - 506
Target Start/End: Complemental strand, 45234192 - 45234112
Alignment:
Q  426 ttatgaaaacaatttaactttattttatcttttacgctagaaataacttgtatgtaaccacttatatgataaacatttatg 506  Q
    ||||||||| ||||| ||||||||||||||||||   |||||||||| ||||   || |||| ||||||||||||||||||    
T  45234192 ttatgaaaataatttgactttattttatcttttattatagaaataacatgtacaaaagcactcatatgataaacatttatg 45234112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 421 - 458
Target Start/End: Original strand, 14737775 - 14737812
Alignment:
Q  421 atagcttatgaaaacaatttaactttattttatctttt 458  Q
    |||||||||||||||||||| |||||||||||||||||    
T  14737775 atagcttatgaaaacaatttgactttattttatctttt 14737812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 421 - 458
Target Start/End: Original strand, 48748653 - 48748690
Alignment:
Q  421 atagcttatgaaaacaatttaactttattttatctttt 458  Q
    |||||||||||||||||||||||||||||| |||||||    
T  48748653 atagcttatgaaaacaatttaactttatttcatctttt 48748690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 427 - 479
Target Start/End: Complemental strand, 11211112 - 11211060
Alignment:
Q  427 tatgaaaacaatttaactttattttatcttttacgctagaaataacttgtatg 479  Q
    |||||||| |||||||||||||||||||||||   ||||||||||||| ||||    
T  11211112 tatgaaaaaaatttaactttattttatcttttgttctagaaataacttatatg 11211060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 494 - 538
Target Start/End: Complemental strand, 21516300 - 21516256
Alignment:
Q  494 ataaacatttatgatataagggtttaattaagatgtttatccaaa 538  Q
    ||||||||||||| |||||| ||||||||||| ||||||||||||    
T  21516300 ataaacatttatgttataagcgtttaattaagttgtttatccaaa 21516256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 431 - 469
Target Start/End: Complemental strand, 15477568 - 15477530
Alignment:
Q  431 aaaacaatttaactttattttatcttttacgctagaaat 469  Q
    ||||||||||||||||||||||||||||||  |||||||    
T  15477568 aaaacaatttaactttattttatcttttactatagaaat 15477530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 484 - 534
Target Start/End: Complemental strand, 24153214 - 24153164
Alignment:
Q  484 cacttatatgataaacatttatgatataagggtttaattaagatgtttatc 534  Q
    |||| ||||||||||||| |||| |||||| ||||||||||| ||||||||    
T  24153214 cactcatatgataaacatatatgttataagtgtttaattaagttgtttatc 24153164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 421 - 458
Target Start/End: Complemental strand, 50319292 - 50319255
Alignment:
Q  421 atagcttatgaaaacaatttaactttattttatctttt 458  Q
    ||||||||||||||||| || |||||||||||||||||    
T  50319292 atagcttatgaaaacaacttgactttattttatctttt 50319255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 427 - 538
Target Start/End: Complemental strand, 27570 - 27459
Alignment:
Q  427 tatgaaaacaatttaactttattttatcttttacgctagaaataacttgtatgtaaccacttatatgataaacatttatgatataagggtttaattaaga 526  Q
    |||||||||||||| ||||||||||||||| |    |||||||||||| ||  ||| |||||| |||||||    ||||| |||||| ||||| |||||     
T  27570 tatgaaaacaatttgactttattttatcttctgttatagaaataacttatacataagcacttacatgataagagcttatgctataagcgtttatttaagt 27471  T
Q  527 tgtttatccaaa 538  Q
    ||||||||||||    
T  27470 tgtttatccaaa 27459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000007; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 446 - 537
Target Start/End: Original strand, 6552365 - 6552456
Alignment:
Q  446 tattttatcttttacgctagaaataacttgtatgtaaccacttatatgataaacatttatgatataagggtttaattaagatgtttatccaa 537  Q
    |||||||||||||    |||||||||||||||  ||| ||||||||||||||  | ||||||| |||| ||||||||||| || ||||||||    
T  6552365 tattttatcttttgttgtagaaataacttgtacataagcacttatatgataagtacttatgatttaagtgtttaattaagttgcttatccaa 6552456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 432 - 491
Target Start/End: Original strand, 21853197 - 21853256
Alignment:
Q  432 aaacaatttaactttattttatcttttacgctagaaataacttgtatgtaaccacttata 491  Q
    |||||||||||||||||||||||||||    |||||||||||| ||| ||| ||||||||    
T  21853197 aaacaatttaactttattttatcttttgtaatagaaataacttatatataatcacttata 21853256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 485 - 538
Target Start/End: Original strand, 5630049 - 5630102
Alignment:
Q  485 acttatatgataaacatttatgatataagggtttaattaagatgtttatccaaa 538  Q
    |||||||||||||||| ||||  |||||||  ||||||||| ||||||||||||    
T  5630049 acttatatgataaacacttattctataaggacttaattaagttgtttatccaaa 5630102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 421 - 498
Target Start/End: Complemental strand, 7244702 - 7244625
Alignment:
Q  421 atagcttatgaaaacaatttaactttattttatcttttacgctagaaataacttgtatgtaaccacttatatgataaa 498  Q
    |||||||||||||||| ||| ||||| |||||||||||    |||||||| ||| ||  ||| |||||||||||||||    
T  7244702 atagcttatgaaaacagtttgactttcttttatcttttgatatagaaatagcttatacataagcacttatatgataaa 7244625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 421 - 458
Target Start/End: Complemental strand, 34035939 - 34035902
Alignment:
Q  421 atagcttatgaaaacaatttaactttattttatctttt 458  Q
    |||||||||||||||||||||||||||| |||| ||||    
T  34035939 atagcttatgaaaacaatttaactttatattatttttt 34035902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000007; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 427 - 474
Target Start/End: Complemental strand, 10728626 - 10728579
Alignment:
Q  427 tatgaaaacaatttaactttattttatcttttacgctagaaataactt 474  Q
    |||||||||||||||||||||||||||||||| |  ||||||||||||    
T  10728626 tatgaaaacaatttaactttattttatcttttgctttagaaataactt 10728579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 427 - 513
Target Start/End: Original strand, 10749304 - 10749389
Alignment:
Q  427 tatgaaaacaatttaactttattttatcttttacgctagaaataacttgtatgtaaccacttatatgataaacatttatgatataag 513  Q
    |||||||| ||||||||||||||||||||||||   ||||||| |||| ||  ||||  ||||||||||||||  ||||||||||||    
T  10749304 tatgaaaataatttaactttattttatcttttattatagaaat-acttatacataacatcttatatgataaacgcttatgatataag 10749389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 442 - 538
Target Start/End: Complemental strand, 5328953 - 5328857
Alignment:
Q  442 actttattttatcttttacgctagaaataacttgtatgtaaccacttatatgataaacatttatgatataagggtttaattaagatgtttatccaaa 538  Q
    |||||||||||||||||    ||||||||||||  | |||| ||||| |||||||| |||||||| |||| | | ||||||||| ||||||| ||||    
T  5328953 actttattttatcttttgttatagaaataacttaaacgtaagcacttttatgataatcatttatgctatatgtggttaattaagctgtttattcaaa 5328857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 426 - 537
Target Start/End: Original strand, 6078364 - 6078475
Alignment:
Q  426 ttatgaaaacaatttaactttattttatcttttacgctagaaataacttgtatgtaaccacttatatgataaacatttatgatataagggtttaattaag 525  Q
    ||||||||||||||| ||||||||||| ||| |  | |||||||| ||  || |||||||| | |||||||| |  ||||| |||||  | |||||||||    
T  6078364 ttatgaaaacaatttgactttattttaccttctgtgatagaaatagctcatacgtaaccacatgtatgataagcgcttatgttataaccgcttaattaag 6078463  T
Q  526 atgtttatccaa 537  Q
     |||||||||||    
T  6078464 ttgtttatccaa 6078475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 421 - 458
Target Start/End: Original strand, 2205638 - 2205675
Alignment:
Q  421 atagcttatgaaaacaatttaactttattttatctttt 458  Q
    |||||||||||||||||||| ||||| |||||||||||    
T  2205638 atagcttatgaaaacaatttgactttgttttatctttt 2205675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 421 - 458
Target Start/End: Complemental strand, 5731592 - 5731555
Alignment:
Q  421 atagcttatgaaaacaatttaactttattttatctttt 458  Q
    |||||||||||||||||||| |||| ||||||||||||    
T  5731592 atagcttatgaaaacaatttgacttcattttatctttt 5731555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 442 - 538
Target Start/End: Complemental strand, 54775107 - 54775011
Alignment:
Q  442 actttattttatcttttacgctagaaataacttgtatgtaaccacttatatgataaacatttatgatataagggtttaattaagatgtttatccaaa 538  Q
    |||||||||||||||||    ||||||||||||  | |||| ||||| |||||||| |||||||| |||| | | ||||||||| ||||||| ||||    
T  54775107 actttattttatcttttgttatagaaataacttaaacgtaagcacttttatgataatcatttatgctatatgtggttaattaagctgtttattcaaa 54775011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 431 - 474
Target Start/End: Complemental strand, 849652 - 849609
Alignment:
Q  431 aaaacaatttaactttattttatcttttacgctagaaataactt 474  Q
    |||||||||||||||||||||||||||| || ||||||| ||||    
T  849652 aaaacaatttaactttattttatcttttccgatagaaatgactt 849609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 427 - 458
Target Start/End: Original strand, 10101552 - 10101583
Alignment:
Q  427 tatgaaaacaatttaactttattttatctttt 458  Q
    ||||||||||||||||||||||||||||||||    
T  10101552 tatgaaaacaatttaactttattttatctttt 10101583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 427 - 458
Target Start/End: Original strand, 10212477 - 10212508
Alignment:
Q  427 tatgaaaacaatttaactttattttatctttt 458  Q
    ||||||||||||||||||||||||||||||||    
T  10212477 tatgaaaacaatttaactttattttatctttt 10212508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 427 - 458
Target Start/End: Original strand, 15304423 - 15304454
Alignment:
Q  427 tatgaaaacaatttaactttattttatctttt 458  Q
    ||||||||||||||||||||||||||||||||    
T  15304423 tatgaaaacaatttaactttattttatctttt 15304454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 427 - 497
Target Start/End: Original strand, 3182438 - 3182508
Alignment:
Q  427 tatgaaaacaatttaactttattttatcttttacgctagaaataacttgtatgtaaccacttatatgataa 497  Q
    |||||||||||||| ||||||||||||||||| |  ||||| |||||| ||  ||| |||||| |||||||    
T  3182438 tatgaaaacaatttgactttattttatctttttctatagaagtaacttatacataaacacttaaatgataa 3182508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 484 - 538
Target Start/End: Original strand, 20874433 - 20874487
Alignment:
Q  484 cacttatatgataaacatttatgatataagggtttaattaagatgtttatccaaa 538  Q
    |||||||||||||  |||||||| |||||| | ||||||||| ||||||||||||    
T  20874433 cacttatatgatatgcatttatgctataagtgcttaattaagttgtttatccaaa 20874487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 363 - 418
Target Start/End: Original strand, 25487466 - 25487521
Alignment:
Q  363 actataggcctattttgattaactcatttgagtttatctattgacataaacacttg 418  Q
    ||||||| | |||||||||||||| |||||||||||||||||  ||||| ||||||    
T  25487466 actatagccatattttgattaacttatttgagtttatctattagcataagcacttg 25487521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 485 - 538
Target Start/End: Original strand, 4684243 - 4684296
Alignment:
Q  485 acttatatgataaacatttatgatataagggtttaattaagatgtttatccaaa 538  Q
    |||||||||||||||| |||||||| ||| | ||||||||| | ||||||||||    
T  4684243 acttatatgataaacacttatgatagaagtgcttaattaagctatttatccaaa 4684296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 429 - 474
Target Start/End: Complemental strand, 49803203 - 49803158
Alignment:
Q  429 tgaaaacaatttaactttattttatcttttacgctagaaataactt 474  Q
    ||||||||||||||||| |||||||||||| |  ||||||||||||    
T  49803203 tgaaaacaatttaacttcattttatcttttgctatagaaataactt 49803158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 442 - 536
Target Start/End: Original strand, 1165 - 1259
Alignment:
Q  442 actttattttatcttttacgctagaaataacttgtatgtaaccacttatatgataaacatttatgatataagggtttaattaagatgtttatcca 536  Q
    |||||||||||||||||    |||||||| ||| ||  ||| ||||||||||||| || |||||| ||||||   ||||||||| ||||||||||    
T  1165 actttattttatcttttgttatagaaatagcttatacataagcacttatatgatagacgtttatgctataagtacttaattaagttgtttatcca 1259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 442 - 536
Target Start/End: Complemental strand, 2810 - 2716
Alignment:
Q  442 actttattttatcttttacgctagaaataacttgtatgtaaccacttatatgataaacatttatgatataagggtttaattaagatgtttatcca 536  Q
    |||||||||||||||||    |||||||| ||| ||  ||| ||||||||||||| || |||||| ||||||   ||||||||| ||||||||||    
T  2810 actttattttatcttttgttatagaaatagcttatacataagcacttatatgatagacgtttatgctataagtacttaattaagttgtttatcca 2716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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