View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0671_low_32 (Length: 266)

Name: NF0671_low_32
Description: NF0671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0671_low_32
NF0671_low_32
[»] chr4 (3 HSPs)
chr4 (27-222)||(28607332-28607527)
chr4 (27-219)||(28612094-28612286)
chr4 (160-220)||(11104127-11104185)
[»] chr1 (1 HSPs)
chr1 (27-219)||(34906753-34906945)
[»] chr2 (1 HSPs)
chr2 (27-219)||(8538832-8539024)
[»] chr6 (1 HSPs)
chr6 (71-219)||(2308757-2308905)
[»] chr8 (4 HSPs)
chr8 (27-154)||(17123887-17124016)
chr8 (160-222)||(12935076-12935136)
chr8 (88-154)||(17121733-17121801)
chr8 (160-219)||(12930333-12930390)
[»] chr3 (1 HSPs)
chr3 (144-220)||(51298522-51298598)


Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 27 - 222
Target Start/End: Original strand, 28607332 - 28607527
Alignment:
Q  27 atgaattgcaagccttcacacttttctgcacagcaagctatgcctagccatgtctctccaccgtaagctatatcatagctttcctatttgtagaaaaatg 126  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  28607332 atgaattgcaagccttcacacttttctgcacagcaagctatgcctagccatgtctctccaccgtaagctataccatagctttcctatttgtagaaaaatg 28607431  T
Q  127 catccttgcattaaataggtagaagactatttacaattacttgtagtaattgtctttggctggaaacaatacccacacgtggtggggccaacaatt 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28607432 catccttgcattaaataggtagaagactatttacaattacttgtagtaattgtctttggctggaaacaatacccacacgtggtggggccaacaatt 28607527  T

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Target: chr4; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 27 - 219
Target Start/End: Original strand, 28612094 - 28612286
Alignment:
Q  27 atgaattgcaagccttcacacttttctgcacagcaagctatgcctagccatgtctctccaccgtaagctatatcatagctttcctatttgtagaaaaatg 126  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  28612094 atgaattgcaagccttcacacttttctgcacagcaagctatgcctagccatgtctctccaccgtaagctataccatagctttcctatttgtagaaaaatg 28612193  T
Q  127 catccttgcattaaataggtagaagactatttacaattacttgtagtaattgtctttggctggaaacaatacccacacgtggtggggccaaca 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28612194 catccttgcattaaataggtagaagactatttacaattacttgtagtaattgtctttggctggaaacaatacccacacgtggtggggccaaca 28612286  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 220
Target Start/End: Complemental strand, 11104185 - 11104127
Alignment:
Q  160 caattacttgtagtaattgtctttggctggaaacaatacccacacgtggtggggccaacaa 220  Q
    ||||| ||||||| ||||||||||||||||  |||  ||||||||||| ||||||||||||    
T  11104185 caattgcttgtagcaattgtctttggctgg--acataacccacacgtgatggggccaacaa 11104127  T

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Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 27 - 219
Target Start/End: Complemental strand, 34906945 - 34906753
Alignment:
Q  27 atgaattgcaagccttcacacttttctgcacagcaagctatgcctagccatgtctctccaccgtaagctatatcatagctttcctatttgtagaaaaatg 126  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||     
T  34906945 atgaattgcaagccttcacacttttctgcacagcaagctatgcctagccatgtctctccaccgtaagctataccatagctttcctatttgtagaaaaatt 34906846  T
Q  127 catccttgcattaaataggtagaagactatttacaattacttgtagtaattgtctttggctggaaacaatacccacacgtggtggggccaaca 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34906845 catccttgcattaaataggtagaagactatttacaattacttgtagtaattgtctttggctggaaacaatacccacacgtggtggggccaaca 34906753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 134; Significance: 8e-70; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 27 - 219
Target Start/End: Complemental strand, 8539024 - 8538832
Alignment:
Q  27 atgaattgcaagccttcacacttttctgcacagcaagctatgcctagccatgtctctccaccgtaagctatatcatagctttcctatttgtagaaaaatg 126  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||    
T  8539024 atgaattgcaagccttcacacttttctgcacagcaagctatgcctagccatgtctctccaccttaagctataccatagctttcctatttgtagaaaaatg 8538925  T
Q  127 catccttgcattaaataggtagaagactatttacaa-ttacttgtagtaattgtctttggctggaaacaatacccacacgtggtggggccaaca 219  Q
    |||| |||||||||||  ||||||||||| ||| || ||| || |||||||||||||||||||| |||| |||||||| |||||||||||||||    
T  8538924 catcattgcattaaatgagtagaagactagttataatttatttatagtaattgtctttggctgg-aacagtacccacatgtggtggggccaaca 8538832  T

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Target: chr6 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 71 - 219
Target Start/End: Complemental strand, 2308905 - 2308757
Alignment:
Q  71 tagccatgtctctccaccgtaagctatatcatagctttcctatttgtagaaaaatgcatccttgcattaaataggtagaagactatttacaattacttgt 170  Q
    |||||||||||||||||||||||||||| ||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  2308905 tagccatgtctctccaccgtaagctataccatagttttcctatttatagaaaaatacatccttgcattaaataggtagaagactatttacaattacttgt 2308806  T
Q  171 agtaattgtctttggctggaaacaatacccacacgtggtggggccaaca 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  2308805 agtaattgtctttggctggaaacaatacccacacgtggtggggccaaca 2308757  T

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Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 27 - 154
Target Start/End: Complemental strand, 17124016 - 17123887
Alignment:
Q  27 atgaattgcaagccttcacacttttctgcacagcaagctatgcctagccatgtctctccaccgtaagctatatcatagctttcctatttgtagaaa--aa 124  Q
    ||||||||||| | |||||||||||||||  |||||| || ||||||||||| ||||||||| |||||||||  |||| |||||||||||||||||  ||    
T  17124016 atgaattgcaaacattcacacttttctgctaagcaagataagcctagccatgcctctccaccttaagctatactatagttttcctatttgtagaaaataa 17123917  T
Q  125 tgcatccttgcattaaataggtagaagact 154  Q
    ||| |||||||||||||||  |||||||||    
T  17123916 tgcttccttgcattaaataaatagaagact 17123887  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 222
Target Start/End: Complemental strand, 12935136 - 12935076
Alignment:
Q  160 caattacttgtagtaattgtctttggctggaaacaatacccacacgtggtggggccaacaatt 222  Q
    ||||| ||||||| ||||||||||||||||| | ||  |||||||||||||||||||||||||    
T  12935136 caattgcttgtagcaattgtctttggctggacataa--cccacacgtggtggggccaacaatt 12935076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 88 - 154
Target Start/End: Complemental strand, 17121801 - 17121733
Alignment:
Q  88 cgtaagctatatcatagctttcctatttgtaga--aaaatgcatccttgcattaaataggtagaagact 154  Q
    ||||||||||  |||| ||||||||||||||||  ||||||| |||||||||||||||  |||||||||    
T  17121801 cgtaagctatgccatatctttcctatttgtagaaaaaaatgcttccttgcattaaatacatagaagact 17121733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 219
Target Start/End: Complemental strand, 12930390 - 12930333
Alignment:
Q  160 caattacttgtagtaattgtctttggctggaaacaatacccacacgtggtggggccaaca 219  Q
    ||||| ||||||| ||||||||||||||||| | ||  ||||||||||||||||||||||    
T  12930390 caattgcttgtagcaattgtctttggctggacataa--cccacacgtggtggggccaaca 12930333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 144 - 220
Target Start/End: Complemental strand, 51298598 - 51298522
Alignment:
Q  144 ggtagaagactatttacaattacttgtagtaattgtctttggctggaaacaatacccacacgtggtggggccaacaa 220  Q
    ||||||| ||||||| |||||||||||||||||||| ||||||  ||||||||| ||||||||||||||||||||||    
T  51298598 ggtagaaaactatttgcaattacttgtagtaattgtttttggccagaaacaatagccacacgtggtggggccaacaa 51298522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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