View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0671_low_39 (Length: 252)
Name: NF0671_low_39
Description: NF0671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0671_low_39 |
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Alignment Details
Target: chr6 (Bit Score: 218; Significance: 1e-120; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 1890710 - 1890956
Alignment:
| Q |
1 |
tggtgatcataggacaggaaactattgaaatggctttactcactttgttcaaagcagccacacttcaagggatgaacaatcatgtctttgttgcctatgc |
100 |
Q |
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| T |
1890710 |
tggtgatcataggacaggaaactattgaaatggctttactcactttgttcaaagcagccacacttcaagggatgaacaatcatgtctttgttgcctatgc |
1890809 |
T |
|
| Q |
101 |
ttatgctattggtactgctattctccttcctatcacnnnnnnnagaagaaggtaagtttgtcagaatcacggtgttagaacaacatatgtatataacaac |
200 |
Q |
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| T |
1890810 |
ttatgctattggtactgctattctccttcctatcactttttttagaagaaggtaagtttgtcagaatcacggtgttagaacaacatatgtatacaacaac |
1890909 |
T |
|
| Q |
201 |
ttagtacatgtttagattgacggtaaatttgtcaggttcatctcact |
247 |
Q |
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| T |
1890910 |
ttagtacatgtttagattgacggtaaatttgtcaggttcatcacact |
1890956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 3 - 136
Target Start/End: Original strand, 1895562 - 1895695
Alignment:
| Q |
3 |
gtgatcataggacaggaaactattgaaatggctttactcactttgttcaaagcagccacacttcaagggatgaacaatcatgtctttgttgcctatgctt |
102 |
Q |
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| T |
1895562 |
gtgatcataggacaggaaactattgaaatggctttactcactttgttcaaagcagccacaaatcaagggatgaacaaccatgtctttgttgcttattctt |
1895661 |
T |
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| Q |
103 |
atgctattggtactgctattctccttcctatcac |
136 |
Q |
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| T |
1895662 |
atgctgttggtacttctgttcttcttcctgtcac |
1895695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 25 - 180
Target Start/End: Original strand, 1884090 - 1884245
Alignment:
| Q |
25 |
ttgaaatggctttactcactttgttcaaagcagccacacttcaagggatgaacaatcatgtctttgttgcctatgcttatgctattggtactgctattct |
124 |
Q |
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| T |
1884090 |
ttgacatggctttactgactttgttcaaagcagctacacttcaagggatgaacaatcatgtctttgttgcctatgcttatgctgttgcaacttcttttct |
1884189 |
T |
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| Q |
125 |
ccttcctatcacnnnnnnnagaagaaggtaagtttgtcagaatcacggtgttagaa |
180 |
Q |
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| T |
1884190 |
ccttcctatcactttttttagaagaaggtaagtttgacagaatcacgacgttagaa |
1884245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 23 - 116
Target Start/End: Original strand, 1911038 - 1911131
Alignment:
| Q |
23 |
tattgaaatggctttactcactttgttcaaagcagccacacttcaagggatgaacaatcatgtctttgttgcctatgcttatgctattggtact |
116 |
Q |
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| T |
1911038 |
tattgacatggctttactcactttgttcaaagcagctacacttcaagggatgaacaatcatgtctttattgcttatgcttatgctgttggtact |
1911131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 31 - 136
Target Start/End: Original strand, 1878084 - 1878189
Alignment:
| Q |
31 |
tggctttactcactttgttcaaagcagccacacttcaagggatgaacaatcatgtctttgttgcctatgcttatgctattggtactgctattctccttcc |
130 |
Q |
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|||||||| ||| ||| | |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |||||||| || |||||||||| |
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| T |
1878084 |
tggctttagtcattttatacaaagcagccacacttcaagggatgaacaactatgtttttgttgcctatgcttatgctgttggtacttctgttctccttcc |
1878183 |
T |
|
| Q |
131 |
tatcac |
136 |
Q |
| |
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|||||| |
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| T |
1878184 |
tatcac |
1878189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 30 - 113
Target Start/End: Original strand, 1902000 - 1902083
Alignment:
| Q |
30 |
atggctttactcactttgttcaaagcagccacacttcaagggatgaacaatcatgtctttgttgcctatgcttatgctattggt |
113 |
Q |
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| T |
1902000 |
atggctttactcactttgttcaaagctgtaacacttcaagggatgaacaaccatgtctttattgcttatgcttatgctgttggt |
1902083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 30 - 79
Target Start/End: Original strand, 11537528 - 11537577
Alignment:
| Q |
30 |
atggctttactcactttgttcaaagcagccacacttcaagggatgaacaa |
79 |
Q |
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| T |
11537528 |
atgggtttgctcactttgttcaaagcagcaccactgcaagggatgaacaa |
11537577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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