View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0671_low_45 (Length: 242)
Name: NF0671_low_45
Description: NF0671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0671_low_45 |
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Alignment Details
Target: chr5 (Bit Score: 168; Significance: 4e-90; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 18 - 217
Target Start/End: Original strand, 34897995 - 34898194
Alignment:
| Q |
18 |
catcattttccatctccacagaaactccttcattctcaacatccacatctactccatcattctccaaatccatagctacgccctcattgtgtacatgata |
117 |
Q |
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| T |
34897995 |
catcattttccatctccacagcaactccttcattctcaacatccacatctactccatcattctctagatccacaactactccctcattgtgtacaggata |
34898094 |
T |
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| Q |
118 |
ttgaataggatactctatcaaagggtttagctctaccatttgtggttgctctcctactgtatgctctacaaacagatgtaccatatcatacatctctgct |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
34898095 |
ttgaataggatactctatcaaagggtttagctctaccatttgtggttgctctcctactgtatgctctacaaacagatgtaccctatcatacatctctgct |
34898194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 98 - 217
Target Start/End: Complemental strand, 24504179 - 24504060
Alignment:
| Q |
98 |
ccctcattgtgtacatgatattgaataggatactctatcaaagggtttagctctaccatttgtggttgctctcctactgtatgctctacaaacagatgta |
197 |
Q |
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||||||||||| ||| ||||||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||||||| |||||| | | ||||| |
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| T |
24504179 |
ccctcattgtgcacaggatattgaataggatactctatcaaagggttcagttctcccatttgtggttgctctcctactgtatgttctacataaaaatgta |
24504080 |
T |
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| Q |
198 |
ccatatcatacatctctgct |
217 |
Q |
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| T |
24504079 |
ctctatcaaacatctctgct |
24504060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 81
Target Start/End: Complemental strand, 24504350 - 24504289
Alignment:
| Q |
20 |
tcattttccatctccacagaaactccttcattctcaacatccacatctactccatcattctc |
81 |
Q |
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||||||||||||||||||| ||||||||||||| ||| ||||||| | |||| |||||||| |
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| T |
24504350 |
tcattttccatctccacagcaactccttcattcccaatatccacaacatctccttcattctc |
24504289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 122 - 216
Target Start/End: Original strand, 23707887 - 23707981
Alignment:
| Q |
122 |
ataggatactctatcaaagggtttagctctaccatttgtggttgctctcctactgtatgctctacaaacagatgtaccatatcatacatctctgc |
216 |
Q |
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| T |
23707887 |
ataggatactcaatcaaaggattgagttctcccattactggttcctcccctactgtatgttcaacatacaaatgcaccctatcatacatctctgc |
23707981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 210
Target Start/End: Original strand, 3816373 - 3816461
Alignment:
| Q |
122 |
ataggatactctatcaaagggtttagctctaccatttgtggttgctctcctactgtatgctctacaaacagatgtaccatatcatacat |
210 |
Q |
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||||||||||| |||||||| || || ||| ||||| ||||| || ||||||||||| || ||||||||||| ||| || ||||||| |
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| T |
3816373 |
ataggatactcaatcaaaggattgagttctcccattacaggttgttcccctactgtatgttcaacaaacagatgcaccctaccatacat |
3816461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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