View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0671_low_5 (Length: 595)
Name: NF0671_low_5
Description: NF0671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0671_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 139; Significance: 2e-72; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 392 - 566
Target Start/End: Complemental strand, 17024700 - 17024526
Alignment:
| Q |
392 |
tccactcttttcatcttctttgctcaattcactttatctattccgcaaatttccctcttaatcattctcatttctttccaaatttcgtgctttatcaccc |
491 |
Q |
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| T |
17024700 |
tccactcttttcatcttctttgctaaattcactttatctattccgcaattttccctcttaatcattcccatttctttccaaatttcgtgctttatcaccc |
17024601 |
T |
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| Q |
492 |
aaagagtttgagacacgatcttcagtataagattcaaatgattttttcgatatcttattgaagggttgagagaga |
566 |
Q |
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| T |
17024600 |
aaagagcttgagacacgatcttcaatataaaattcaaatgattccctcgatatcttattgaagggttgagagaga |
17024526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 222 - 369
Target Start/End: Complemental strand, 17025054 - 17024907
Alignment:
| Q |
222 |
aatgtcaatgataacaagctaaacaatatatacaagaaattcaaatcgaacgaaaaattcacttgaattttgttaaaccaatcaaatattattacattaa |
321 |
Q |
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| T |
17025054 |
aatgtcaatgataacaagctaaacaatatatacaagaaattcaaatcgaacgagaaattcacttgaattttgttaaaccgatcaaatattattacattaa |
17024955 |
T |
|
| Q |
322 |
ataatccacgaagccacaaaatattacaaaccaaacctaattttaagc |
369 |
Q |
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| T |
17024954 |
ataatccacgaagccacaaactattacaaaccaaacctaattttaagc |
17024907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 140 - 205
Target Start/End: Complemental strand, 17025110 - 17025044
Alignment:
| Q |
140 |
gtgaaaagtggatttaaaattcttatgaaaagttattgat-ggattttgtgcgacgaatgtcaatga |
205 |
Q |
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| T |
17025110 |
gtgaaaagtggatttaaaattcttttgaaaagttattgatgggattttgtgcgacgaatgtcaatga |
17025044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 222 - 315
Target Start/End: Original strand, 20901457 - 20901550
Alignment:
| Q |
222 |
aatgtcaatgataacaagctaaacaatatatacaagaaattcaaatcgaacgaaaaattcacttgaattttgttaaaccaatcaaatattatta |
315 |
Q |
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|||| |||||||||| ||||||||||| | |||||| |||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||| |
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| T |
20901457 |
aatgacaatgataactagctaaacaatgtgtacaagcaattcaaatcgaacgagaaattcacttgaattgtgttaaagtaatcaaatattatta |
20901550 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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