View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0671_low_6 (Length: 562)
Name: NF0671_low_6
Description: NF0671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0671_low_6 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 500; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 8 - 562
Target Start/End: Original strand, 55162069 - 55162623
Alignment:
| Q |
8 |
ccaagaatatatcatcaacactgtgagtcagtccaagctaatcttcacttcagcactcacacttcaaattaaaaacaattt-----ggtgtctcataggt |
102 |
Q |
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| T |
55162069 |
ccaacaatatatcatcaacactgtgagtcagtccaagctaatcttcacttcagcactcacacttcaaattaaaaacaatttaatttggtgtctcataggt |
55162168 |
T |
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| Q |
103 |
aaggtatatattaaaagatatatagaagaatctaattatagttttgtctctctgatttgacagaaaagaaagcgtgccgtcaccgttcatgtatcagacc |
202 |
Q |
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| T |
55162169 |
-----atatattaaaagatatatagaagaatctaattatagttttgtctctctgatttgacagaaaagaaagcgtgccgtcaccgttcatgtatcagacc |
55162263 |
T |
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| Q |
203 |
ctaatggaaagaaattacaaggagcttctgtgtttgtagagcaaatatcaaaagactttcctattggctctgcgatatcaaagaccattcttggcaacat |
302 |
Q |
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| T |
55162264 |
ctaatggaaggaaattacaaggagcttctgtgtttgtagagcaaatatcaaaagactttcctattggctctgcgatagcaaagaccattcttggcaacat |
55162363 |
T |
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| Q |
303 |
accatatcagaattggtttttgaaacggttcaatgctgcagtgtttgaaaacgagcttaaatggtatgccacagagcctcatgaaggcagagtcaactac |
402 |
Q |
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| T |
55162364 |
accatatcagaattggtttttgaaacggttcaatgctgcagtgtttgaaaacgagcttaaatggtatgccacagagcctcatgaaggcagcgtcaactac |
55162463 |
T |
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| Q |
403 |
acaatttcagatcaaatgatgcaatttgttagagccaacaaaatcatagctagagggcacaatatattctgggaagaccctaaatacaatcctgcatggg |
502 |
Q |
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| T |
55162464 |
acaatttcagaccaaatgatgcaatttgttagagccaacaaaatcatagctagagggcacaatatattctgggaagaccctaaatacaatcctgcatggg |
55162563 |
T |
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| Q |
503 |
ttcttaaccttacaggtacacagttaagatctgctgtgaattcacgaattcaaagtctca |
562 |
Q |
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| T |
55162564 |
ttcttaaccttacaggtacacagttaagatctgctgtgaattcacgaattcaaagtctca |
55162623 |
T |
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