View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0672_high_2 (Length: 523)
Name: NF0672_high_2
Description: NF0672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0672_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 385; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 65 - 513
Target Start/End: Complemental strand, 44191949 - 44191511
Alignment:
| Q |
65 |
ataaccttaagtaaaacttctcatcagaaatagtaattggagacatagtaattacaatttagctttatatctcctagtttacgtgtataaaagaaaggat |
164 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44191949 |
ataaccttaagtaaaacttctcatcagaaatagtaattggagacatagtaattacaatttagctttatatctcctagtttacgtgtataaaagaaaggat |
44191850 |
T |
|
| Q |
165 |
tatgcatcagcaaattgttcacatcagtttgaaaaggttcaaatatttgacaaagtacttaagagtttaccaataaagtaattgtctttgctgttccaat |
264 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |
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| T |
44191849 |
tatgcatcagcaaattgttcacatcagtttgaaaaggttcaaatatttgacaaagtactt-tgagtttactaataaagtaattgtctttgctgttccaat |
44191751 |
T |
|
| Q |
265 |
tatgctcccatgcatatctagtattattgctttacagtgaacttattccattgcaccgaggtgacaaatatttgaggaaactatcgaatgataaatgatt |
364 |
Q |
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||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44191750 |
tatgctcccatccatatctagtattattgctttacggtgaacttattccattgcaccgaggtgacaaatatttgaggaaactatcgaatgataaatgatt |
44191651 |
T |
|
| Q |
365 |
agtaaaattaaacctattgttgataggttgagtcccatctaacaatgtctgaactctgatgactttctttaaaaagaacaggtacaattgcgacaatata |
464 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
44191650 |
agtaaa---------attgttgataggttgagtcccatctaacaatgtctgaactctgatgacttactttaaaaagaacaggtacaattgcgacaatata |
44191560 |
T |
|
| Q |
465 |
tgctttcaatattttaagccacgaaataagctgttgaatgaggcctttg |
513 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44191559 |
tgctatcaatattttaagccacgaaataagctgttgaatgaggcctttg |
44191511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 119 - 513
Target Start/End: Complemental strand, 44203177 - 44202784
Alignment:
| Q |
119 |
caatttagctttatatctcctagtttacgtgtataaaagaaaggattatgcatcagcaaattgttcacatcagtttgaaaaggttcaaatatttgacaaa |
218 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | | || ||| ||||| ||||||||||||||||||||||||| | |
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| T |
44203177 |
caatttagctttatatctcctagtttaagtgtataaaagaaaggattatgcatcaactattttttcgcatcattttgaaaaggttcaaatatttgacata |
44203078 |
T |
|
| Q |
219 |
gtacttaagagtttaccaataaagtaattgtctttgctgttccaattatgctcccatgcatatctagtattattgctttacagtgaacttattccattgc |
318 |
Q |
| |
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||| ||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
44203077 |
gtaatta-gagtttactaataaattaattgtctttgctgttccaattatgctcccatgcatatctagtattattgctttacagtgaacttattcaattgc |
44202979 |
T |
|
| Q |
319 |
accgaggtgacaaatatttgaggaaactatcgaatgataaatgattagtaaaattaaacctattgttgataggttgagtcccatctaacaatgtctgaac |
418 |
Q |
| |
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| |||||||||||| |||||| |||||||| ||||||||||||||||||||||||||| |||| ||||||||||| | | |||||||||| ||||||||| |
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| T |
44202978 |
aacgaggtgacaaagatttgacgaaactattgaatgataaatgattagtaaaattaaaactatcgttgataggttaaatgccatctaacagtgtctgaac |
44202879 |
T |
|
| Q |
419 |
tctgatgactttctttaaaaagaacaggtacaattgcgacaatatatgctttcaatattttaagccacgaaataagctgttgaatgaggcctttg |
513 |
Q |
| |
|
|||||| ||||| ||||||||||| |||||||||||||||||| ||||| |||| |||||||| |||||| ||||||| |||||| ||||||| |
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| T |
44202878 |
tctgatagctttcattaaaaagaaccggtacaattgcgacaatagatgctatcaaaattttaagtcacgaattaagctgcagaatgatgcctttg |
44202784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 291 - 339
Target Start/End: Complemental strand, 432049 - 432001
Alignment:
| Q |
291 |
ttgctttacagtgaacttattccattgcaccgaggtgacaaatatttga |
339 |
Q |
| |
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||||||||||| |||||||||||||||||| |||||||||||||||| |
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| T |
432049 |
ttgctttacagggaacttattccattgcactatggtgacaaatatttga |
432001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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