View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0672_low_10 (Length: 386)
Name: NF0672_low_10
Description: NF0672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0672_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 163; Significance: 6e-87; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 201 - 375
Target Start/End: Original strand, 41168778 - 41168952
Alignment:
| Q |
201 |
accctctccatgaagttgccactagcagaccatgtgaataaagagggacatgaaacaaaataggtgggagagcttagaaatggtaagttgaattcaagtg |
300 |
Q |
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| T |
41168778 |
accctctccaagaagttgccactagcagaccatgtgaataaatagggacatgaaacaaaataggtgggagagcttagaaatggtaagttgaattcaagtg |
41168877 |
T |
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| Q |
301 |
tcgctgttcattcaaggagaacaaacttacctcgattgcaatgaatgttttacacctttgttttgtaaaagaata |
375 |
Q |
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| T |
41168878 |
tcgctgttcattcaaggagaacaaacttacctcgattgcaatgaatgttttacacctttgctttgtaaaagaata |
41168952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 140; Significance: 3e-73; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 7 - 146
Target Start/End: Complemental strand, 41668224 - 41668085
Alignment:
| Q |
7 |
ggcacaatgttgggcaagatttgggttgaaggttactactcataacagaaaagtcgtagtagttgaacaattcatgtagccgtgtgtatcataaatggaa |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41668224 |
ggcacaatgttgggcaagatttgggttgaaggttactactcataacagaaaagtcgtagtagttgaacaattcatgtagccgtgtgtatcataaatggaa |
41668125 |
T |
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| Q |
107 |
aaaatgtttttttctgtgatcctggaatcaaataatttcg |
146 |
Q |
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| T |
41668124 |
aaaatgtttttttctgtgatcctggaatcaaataatttcg |
41668085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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