View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0672_low_11 (Length: 374)
Name: NF0672_low_11
Description: NF0672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0672_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 178; Significance: 6e-96; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 16 - 328
Target Start/End: Original strand, 47251770 - 47252081
Alignment:
| Q |
16 |
attgagtttagcaaaattgattaaattctcacaactacctgaatcaatgtttaaatcgcgactaagagaaatatctatatatttaatgtctgacaatata |
115 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47251770 |
attgagtttagcaaaattgattaaattctcacaactatctgaatcaatgtttgaatcgcgactaagagaaatatctatatatttaatgtctgacaatata |
47251869 |
T |
|
| Q |
116 |
cgtctcgattaagattactttcaatagattgaacatatataagnnnnnnnnnnnnnnnncatttaagattaatttcgatagattgaacatatatagnnnn |
215 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||| || ||||||||| ||||||||||||||||||||||| |
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| T |
47251870 |
cgtctcgattaagattactttcgatagattgaacatatataagaaacaaaaacaaaaaaca-ttaagattactttcgatagattgaacatatataaaaaa |
47251968 |
T |
|
| Q |
216 |
nnnnnnnnnnnnncatgatactcatacacctttattcttattctgaaaattgcataatgttttagtaaccattttgttttgaaggaaaagctttagatgt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |
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| T |
47251969 |
caaaaacaaaaaacatgatactcatacacctttattcttattctgaaaattgcataaggttttagtaaccattttgttttgaaggaaaagttttagatgt |
47252068 |
T |
|
| Q |
316 |
gtataggaattat |
328 |
Q |
| |
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||||||||||||| |
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| T |
47252069 |
gtataggaattat |
47252081 |
T |
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