View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0672_low_13 (Length: 358)
Name: NF0672_low_13
Description: NF0672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0672_low_13 |
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| [»] chr3 (9 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 262; Significance: 1e-146; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 69 - 358
Target Start/End: Original strand, 11155989 - 11156278
Alignment:
| Q |
69 |
tgagatggacatcatcaagcaacctgcacaacaagaaacaagtatgaggccaggaaaagcgaaagagcagtggcggaacttgaataattttacgaggaag |
168 |
Q |
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||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
11155989 |
tgagatgaacatcaacaagcaacctgcacaacaagaaacaagtatgaggccaggaaaagcgaaagagcagtggtggaacttgaataattttacgaggaag |
11156088 |
T |
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| Q |
169 |
tgaaagatatacaaccgcataataaaattatttatataccgaatatgtaataaaatgaatgttacaacacctatgaactctaacttgagattgtccaaca |
268 |
Q |
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| T |
11156089 |
tgaaagatatacaaccgcataataaaattatttatataccgaatatgtaataaaatgaatgttacaacacctatgaactctaacttgagattgtccaaca |
11156188 |
T |
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| Q |
269 |
aaatcaagaaaagtactattaagttttcagtatcacacagcaagtatagaccatcaagatcttaagaagtttatttagaactttgaaaat |
358 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||||||||| |
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| T |
11156189 |
aaatcaagaaaagtactagtaagttttcagtatcacacagcaagtatagaccatcaagatcttcagcaatttatttagaactttgaaaat |
11156278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 69 - 358
Target Start/End: Original strand, 11144811 - 11145103
Alignment:
| Q |
69 |
tgagatggacatcatcaagcaacctgcacaacaagaaacaagtat---gaggccaggaaaagcgaaagagcagtggcggaacttgaataattttacgagg |
165 |
Q |
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| T |
11144811 |
tgagatgaacatcagcaagcaacctacaccacaagaagcaagtattatgagtccaggaaaagcgaaagagcagtggcggaacttgaataattttacgagg |
11144910 |
T |
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| Q |
166 |
aagtgaaagatatacaaccgcataataaaattatttatataccgaatatgtaataaaatgaatgttacaacacctatgaactctaacttgagattgtcca |
265 |
Q |
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| T |
11144911 |
aagtgaaagatatacaaccgcataataaaattatttatataccaaatatgtaataaaatgaatgttacaacacctatgaaatctaacttcagattgtcca |
11145010 |
T |
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| Q |
266 |
acaaaatcaagaaaagtactattaagttttcagtatcacacagcaagtatagaccatcaagatcttaagaagtttatttagaactttgaaaat |
358 |
Q |
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| T |
11145011 |
acaaaatcaagaaaagtactaataagctttcagtatcacacagcaagtgcagaccatcaagatcttaagcaatttatttagaactttgaaaat |
11145103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 69 - 358
Target Start/End: Complemental strand, 8865643 - 8865363
Alignment:
| Q |
69 |
tgagatggacatcatcaagcaacctgcacaacaagaaacaagtatgaggccaggaaaagcgaaagagcagtggcggaacttgaataattttacgaggaag |
168 |
Q |
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||||||| |||||| |||||||||| ||||||||||| |||||||||| |||||||||| |||| |||| |||||| |||||||| ||| | ||||||| |
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| T |
8865643 |
tgagatgaacatcagcaagcaacctacacaacaagaagcaagtatgagtccaggaaaaggaaaagtgcagcggcggagcttgaatagtttaatgaggaag |
8865544 |
T |
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| Q |
169 |
tgaaagatatacaaccgcataataaaattatttatataccgaatatgtaataaaatgaatgttacaacac-ctatgaactctaacttgagattgtccaac |
267 |
Q |
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| T |
8865543 |
cgaaagatatacaaccacataataaaattatt--tataccaaatatgtaataaaatgaatgttacaacacagcaagtactattac--------gttttat |
8865454 |
T |
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| Q |
268 |
aaaatcaagaaaagtactattaagttttcagtatcacacagcaagtatagaccatcaagatcttaagaagtttatttagaactttgaaaat |
358 |
Q |
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| T |
8865453 |
aaaatctagaaaagtactattaagttttcagtatcacacagcaagaatagaccatcaagatcttaagcagtttatttagaactttgaaaat |
8865363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 69 - 358
Target Start/End: Original strand, 11127114 - 11127395
Alignment:
| Q |
69 |
tgagatggacatcatcaagcaacctgcacaacaagaaa-caagtatgaggccaggaaaagcgaaagagcagtggcggaacttgaataattttacgaggaa |
167 |
Q |
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||||||| |||||| |||||||||| |||||||||||| |||||||||| |||||||||| |||| |||| |||||| |||||||| ||| | || ||| |
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| T |
11127114 |
tgagatgaacatcagcaagcaacctacacaacaagaaagcaagtatgagtccaggaaaaggaaaagtgcagcggcggagcttgaatagtttaatgatgaa |
11127213 |
T |
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| Q |
168 |
gtgaaagatatacaaccgcataataaaattatttatataccgaatatgtaataaaatgaatgttacaacac-ctatgaactctaacttgagattgtccaa |
266 |
Q |
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| T |
11127214 |
gcgaaagatatacaaccacataataaaattatt--tatactgaatatgtaataaaatgaatgttacaacacagcaagtactattac--------gtttta |
11127303 |
T |
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| Q |
267 |
caaaatcaagaaaagtactattaagttttcagtatcacacagcaagtatagaccatcaagatcttaagaagtttatttagaactttgaaaat |
358 |
Q |
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| T |
11127304 |
taaaatctagaaaagtaatattaagttttcagtatcacacagcaagtataaactatcaagctcttaagcagtttatttagaactttgaaaat |
11127395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 69 - 238
Target Start/End: Complemental strand, 10893256 - 10893089
Alignment:
| Q |
69 |
tgagatggacatcatcaagcaacctgcacaacaagaaacaagtatgaggccaggaaaagcgaaagagcagtggcggaacttgaataattttacgaggaag |
168 |
Q |
| |
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||||||| |||||| |||||||||| ||||||||||| |||||||||| |||||||||| |||| |||| |||||| |||||||| ||| | ||||||| |
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| T |
10893256 |
tgagatgaacatcagcaagcaacctacacaacaagaagcaagtatgagtccaggaaaaggaaaagtgcagcggcggagcttgaatagtttaatgaggaag |
10893157 |
T |
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| Q |
169 |
tgaaagatatacaaccgcataataaaattatttatataccgaatatgtaataaaatgaatgttacaacac |
238 |
Q |
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| T |
10893156 |
cgaaagatatacaaccacataataaaattatt--tatactgaatatgtaataaaatgaatgttacaacac |
10893089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 251 - 313
Target Start/End: Complemental strand, 11193195 - 11193133
Alignment:
| Q |
251 |
acttgagattgtccaacaaaatcaagaaaagtactattaagttttcagtatcacacagcaagt |
313 |
Q |
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| T |
11193195 |
acttgagattgttcaacaaaatcaagaaaagtactactaagttttcagtattacacagcaagt |
11193133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 227 - 300
Target Start/End: Complemental strand, 8868058 - 8867985
Alignment:
| Q |
227 |
atgttacaacacctatgaactctaacttgagattgtccaacaaaatcaagaaaagtactattaagttttcagta |
300 |
Q |
| |
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||||||||| ||| || || ||| |||||||||||| ||||||||||||||||||||||| ||||||||||||| |
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| T |
8868058 |
atgttacaataccgattaagtctgacttgagattgttcaacaaaatcaagaaaagtactactaagttttcagta |
8867985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 227 - 300
Target Start/End: Complemental strand, 10895765 - 10895692
Alignment:
| Q |
227 |
atgttacaacacctatgaactctaacttgagattgtccaacaaaatcaagaaaagtactattaagttttcagta |
300 |
Q |
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||||||||| ||| || || ||| |||||||||||| ||||||||||||||||||||||| || |||||||||| |
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| T |
10895765 |
atgttacaataccgattaagtctgacttgagattgttcaacaaaatcaagaaaagtactactatgttttcagta |
10895692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 227 - 300
Target Start/End: Original strand, 11142767 - 11142840
Alignment:
| Q |
227 |
atgttacaacacctatgaactctaacttgagattgtccaacaaaatcaagaaaagtactattaagttttcagta |
300 |
Q |
| |
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||||||||| ||| || || ||| |||||||||||| |||||||||||||||||||||| || |||||||||| |
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| T |
11142767 |
atgttacaataccgattaagtctgacttgagattgttcaacaaaatcaagaaaagtactgctatgttttcagta |
11142840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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