View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
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Alignment Overview
Query: NF0672_low_16 (Length: 334)
Name: NF0672_low_16
Description: NF0672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
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Alignment Details
Target: chr4 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 148 - 327
Target Start/End: Original strand, 38186819 - 38186998
Alignment:
| Q | 148 | cttaccatcgagggtaaaatgtttggtgaaaggggtacgggggagaaggaaaattttgcatagagaaataatccaaaggaaaatgaaagaagcgattatg | 247 | Q |
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| T | 38186819 | cttaccatcgagggtaaaatgtttggtgaaaggggtacgggggagaaggaaaattttgcatagagaaataatccaaaggaaaatgaaagaagcgattatg | 38186918 | T |
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| Q | 248 | agaatcaaggccatgaaggttgaaattcaaacaccaattcaatgattagggctcaaaatgaattgtttttattcatctca | 327 | Q |
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| T | 38186919 | agaatcaaggccatgaaggttgaaattgaaacaccaattcaatgattagtgctcaaaatgaattgtttttattcatctca | 38186998 | T |
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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 63
Target Start/End: Original strand, 38186692 - 38186733
Alignment:
| Q | 22 | catcatcagggtgagcaataaccagcaagacatttctcttcc | 63 | Q |
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| T | 38186692 | catcgtcagggtgagcaataaccagcaagacatttctcttcc | 38186733 | T |
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