View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0672_low_17 (Length: 329)
Name: NF0672_low_17
Description: NF0672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0672_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 65 - 256
Target Start/End: Complemental strand, 44191949 - 44191759
Alignment:
| Q |
65 |
ataaccttaagtaaaacttctcatcagaaatagtaattggagacatagtaattacaatttagctttatatctcctagtttacgtgtataaaagaaaggat |
164 |
Q |
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| T |
44191949 |
ataaccttaagtaaaacttctcatcagaaatagtaattggagacatagtaattacaatttagctttatatctcctagtttacgtgtataaaagaaaggat |
44191850 |
T |
|
| Q |
165 |
tatgcatcagcaaattgttcacatcagtttgaaaaggttcaaatatttgacaaagtacttaagagtttaccaataaagtaattgtctctgct |
256 |
Q |
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| T |
44191849 |
tatgcatcagcaaattgttcacatcagtttgaaaaggttcaaatatttgacaaagtactt-tgagtttactaataaagtaattgtctttgct |
44191759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 119 - 256
Target Start/End: Complemental strand, 44203177 - 44203041
Alignment:
| Q |
119 |
caatttagctttatatctcctagtttacgtgtataaaagaaaggattatgcatcagcaaattgttcacatcagtttgaaaaggttcaaatatttgacaaa |
218 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | | || ||| ||||| ||||||||||||||||||||||||| | |
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| T |
44203177 |
caatttagctttatatctcctagtttaagtgtataaaagaaaggattatgcatcaactattttttcgcatcattttgaaaaggttcaaatatttgacata |
44203078 |
T |
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| Q |
219 |
gtacttaagagtttaccaataaagtaattgtctctgct |
256 |
Q |
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||| || ||||||||| |||||| ||||||||| |||| |
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| T |
44203077 |
gtaatt-agagtttactaataaattaattgtctttgct |
44203041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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