View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0672_low_19 (Length: 293)
Name: NF0672_low_19
Description: NF0672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0672_low_19 |
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| [»] scaffold0651 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 31320522 - 31320245
Alignment:
| Q |
1 |
caaacatttcttcttctttctggtattggtattcttataattattatcaaacaagaatctctcagctttgcatcctgttattatcacagcatctttttca |
100 |
Q |
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|||||||||||| |||||||||||||||| |||| |||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||| |||| ||| |
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| T |
31320522 |
caaacatttcttattctttctggtattggcattcctataattattttcaaacaagaatctctcagctttacatcctgttataatcacagcacctttatca |
31320423 |
T |
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| Q |
101 |
acagcatctacaagccatgtagcttgagtcccttgtttctcaccttttggacaaccataaccacatgaaccacaataatgattccctggtgaatttcttg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31320422 |
acagcatctacaagccatgtagcttgagtcccttgtttctctccctttggacaaccataaccacatgaaccacaataatgattccctggtgaatttcttg |
31320323 |
T |
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| Q |
201 |
gcacataatcaacttttaagccaagattttggcacccttttcttaatacttgattttggaatccttcttgtgtacaat |
278 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31320322 |
gcacataatcaacttttaagccaagattttggcacccttttcttaatacttgattttggaatccttcttgtgtacaat |
31320245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 31332775 - 31332498
Alignment:
| Q |
1 |
caaacatttcttcttctttctggtattggtattcttataattattatcaaacaagaatctctcagctttgcatcctgttattatcacagcatctttttca |
100 |
Q |
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|||||||||||| |||||||||||||||| |||| |||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||| |||| ||| |
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| T |
31332775 |
caaacatttcttattctttctggtattggcattcctataattattttcaaacaagaatctctcagctttacatcctgttataatcacagcacctttatca |
31332676 |
T |
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| Q |
101 |
acagcatctacaagccatgtagcttgagtcccttgtttctcaccttttggacaaccataaccacatgaaccacaataatgattccctggtgaatttcttg |
200 |
Q |
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| T |
31332675 |
acagcatctacaagccatgtagcttgagtcccttgtttctctccctttggacaaccataaccacatgaaccacaataatgattccctggtgaatttcttg |
31332576 |
T |
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| Q |
201 |
gcacataatcaacttttaagccaagattttggcacccttttcttaatacttgattttggaatccttcttgtgtacaat |
278 |
Q |
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| T |
31332575 |
gcacataatcaacttttaagccaagattttgacacccttttcttaatacttgattttggaatccttcttgtgtacaat |
31332498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0651 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: scaffold0651
Description:
Target: scaffold0651; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 3148 - 3425
Alignment:
| Q |
1 |
caaacatttcttcttctttctggtattggtattcttataattattatcaaacaagaatctctcagctttgcatcctgttattatcacagcatctttttca |
100 |
Q |
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|||||||||||| |||||||||||||||| |||| |||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||| |||| ||| |
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| T |
3148 |
caaacatttcttattctttctggtattggcattcctataattattttcaaacaagaatctctcagctttacatcctgttataatcacagcacctttatca |
3247 |
T |
|
| Q |
101 |
acagcatctacaagccatgtagcttgagtcccttgtttctcaccttttggacaaccataaccacatgaaccacaataatgattccctggtgaatttcttg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3248 |
acagcatctacaagccatgtagcttgagtcccttgtttctctccctttggacaaccataaccacatgaaccacaataatgattccctggtgaatttcttg |
3347 |
T |
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| Q |
201 |
gcacataatcaacttttaagccaagattttggcacccttttcttaatacttgattttggaatccttcttgtgtacaat |
278 |
Q |
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| T |
3348 |
gcacataatcaacttttaagccaagattttgacacccttttcttaatacttgattttggaatccttcttgtgtacaat |
3425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 62 - 215
Target Start/End: Original strand, 33521947 - 33522105
Alignment:
| Q |
62 |
tcagctttgcatcctgttattatcacagcatctttttcaacagcatctacaagccatgtagcttgagtcccttgtttc-----tcaccttttggacaacc |
156 |
Q |
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||||||||||||| ||||| ||| |||||| | | ||| |||||||| |||||||||||| | | ||||||||||| || ||||||| |||||| |
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| T |
33521947 |
tcagctttgcatcttgttagtattacagcaccgtgttccacagcatcgacaagccatgtaacatcggtcccttgttttgtttatctccttttgtacaacc |
33522046 |
T |
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| Q |
157 |
ataaccacatgaaccacaataatgattccctggtgaatttcttggcacataatcaactt |
215 |
Q |
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||| ||| |||||||| ||||||| | ||| ||||||||| ||||||||||| |||| |
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| T |
33522047 |
atagttacaagaaccacagtaatgatgctctgatgaatttctcggcacataatcgactt |
33522105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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