View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0672_low_23 (Length: 274)
Name: NF0672_low_23
Description: NF0672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0672_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 29 - 233
Target Start/End: Original strand, 7601918 - 7602122
Alignment:
| Q |
29 |
agtgagatgaagtatggtaagatgaagatcggtaaaaatttaccataatcatctcgaaatgatataaatttataattggttttgttgacgagtgtttttg |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
7601918 |
agtgagatgaagtatggtaagatgaagatcggtaaaaatttaccataatcatctcggaatgatataaatttataattggttttgttaacgagtgtttttg |
7602017 |
T |
|
| Q |
129 |
aaacactctttaagtatcttcaatttaaaaattattcttttaagacgttaaatattacaaattacaacacattttacctatgttattgttttctttacga |
228 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
7602018 |
agacactctttaagtatcttcaatttaaaaattattcttttaagacgttaaatattacaaattacaatacattttacctatgttattgttttctttacga |
7602117 |
T |
|
| Q |
229 |
tgatg |
233 |
Q |
| |
|
||||| |
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|
| T |
7602118 |
tgatg |
7602122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 132 - 191
Target Start/End: Original strand, 34898932 - 34898991
Alignment:
| Q |
132 |
cactctttaagtatcttcaatttaaaaattattcttttaagacgttaaatattacaaatt |
191 |
Q |
| |
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||||||||||| ||||||||||||||||||||| ||| || | || || ||||||||||| |
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|
| T |
34898932 |
cactctttaaggatcttcaatttaaaaattattttttcaaaaagtcaattattacaaatt |
34898991 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 131 - 171
Target Start/End: Complemental strand, 167956 - 167916
Alignment:
| Q |
131 |
acactctttaagtatcttcaatttaaaaattattcttttaa |
171 |
Q |
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| T |
167956 |
acactctttaagtatctcaaatttaaaaattattcttttaa |
167916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 188
Target Start/End: Original strand, 44592839 - 44592917
Alignment:
| Q |
110 |
ttgttgacgagtgtttttgaaacactctttaagtatcttcaatttaaaaattattcttttaagacgttaaatattacaa |
188 |
Q |
| |
|
||||| |||||||||| || |||||||||||| ||| ||||||| |||||||||||||| | ||||| |||||||| |
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|
| T |
44592839 |
ttgttaacgagtgtttctggaacactctttaaatattcaaaatttaataattattcttttaaaaagttaactattacaa |
44592917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 188
Target Start/End: Complemental strand, 11721011 - 11720933
Alignment:
| Q |
110 |
ttgttgacgagtgtttttgaaacactctttaagtatcttcaatttaaaaattattcttttaagacgttaaatattacaa |
188 |
Q |
| |
|
||||| |||||||| ||||| |||||||||| ||| | ||||||| |||||||||||||||| || || |||||||| |
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|
| T |
11721011 |
ttgttaacgagtgtctttgagtcactctttaaacatcctaaatttaacaattattcttttaagaagtcaactattacaa |
11720933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 201
Target Start/End: Original strand, 15458417 - 15458485
Alignment:
| Q |
133 |
actctttaagtatcttcaatttaaaaattattcttttaagacgttaaatattacaaattacaacacatt |
201 |
Q |
| |
|
||||||||| |||| ||||||||||| |||||||| || | ||||||| |||||||||| || ||||| |
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|
| T |
15458417 |
actctttaaagatctccaatttaaaaagtattctttaaaaaagttaaatgttacaaattataatacatt |
15458485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 191
Target Start/End: Complemental strand, 47308609 - 47308526
Alignment:
| Q |
107 |
gttttgttgacgagtgtttttgaaacactctttaagtatcttcaatttaaaaattattcttttaagacgttaaatattacaaatt |
191 |
Q |
| |
|
|||||| | |||||||| || |||||||||||||| |||| |||||| ||||||||| || || || |||||||||||||||| |
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|
| T |
47308609 |
gttttgctaacgagtgtcttcgaaacactctttaaaaatctaaaatttataaattattccttcaaaac-ttaaatattacaaatt |
47308526 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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