View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0672_low_29 (Length: 246)
Name: NF0672_low_29
Description: NF0672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0672_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 109; Significance: 6e-55; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 109 - 229
Target Start/End: Original strand, 9796574 - 9796694
Alignment:
| Q |
109 |
aggaataagtgttaacatcaatgctgacttgaaaataatcttgaacagttgtagggttaatacgcccgttggttacacatgtagacgttaagatatcatg |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||| |
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| T |
9796574 |
aggaataagtgttaacatcaatgctgacttgaaaataatcttgaacagttgtggggttaatacgcccgctggtttcacatgtagacgttaagatatcatg |
9796673 |
T |
|
| Q |
209 |
tatgagcaatggccaatgaat |
229 |
Q |
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||||||||||||||||||||| |
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| T |
9796674 |
tatgagcaatggccaatgaat |
9796694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 109 - 229
Target Start/End: Original strand, 9802575 - 9802695
Alignment:
| Q |
109 |
aggaataagtgttaacatcaatgctgacttgaaaataatcttgaacagttgtagggttaatacgcccgttggttacacatgtagacgttaagatatcatg |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||| |
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| T |
9802575 |
aggaataagtgttaacatcaatgctgacttgaaaataatcttgaacagttgtggggttaatacgcccgctggtttcacatgtagacgttaagatatcatg |
9802674 |
T |
|
| Q |
209 |
tatgagcaatggccaatgaat |
229 |
Q |
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||||||||||||||||||||| |
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| T |
9802675 |
tatgagcaatggccaatgaat |
9802695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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