View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0672_low_3 (Length: 521)

Name: NF0672_low_3
Description: NF0672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0672_low_3
NF0672_low_3
[»] chr3 (16 HSPs)
chr3 (70-435)||(8988288-8988653)
chr3 (31-435)||(8962504-8962919)
chr3 (197-435)||(8957064-8957299)
chr3 (180-435)||(8965219-8965484)
chr3 (246-383)||(9101223-9101360)
chr3 (242-383)||(9029108-9029249)
chr3 (242-373)||(8746959-8747090)
chr3 (242-373)||(9034625-9034756)
chr3 (242-409)||(9023416-9023586)
chr3 (243-383)||(9026149-9026289)
chr3 (70-148)||(8965548-8965626)
chr3 (238-370)||(9108802-9108934)
chr3 (238-379)||(8755580-8755721)
chr3 (236-373)||(9019293-9019430)
chr3 (243-373)||(9015428-9015558)
chr3 (233-376)||(9112109-9112252)


Alignment Details
Target: chr3 (Bit Score: 314; Significance: 1e-177; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 70 - 435
Target Start/End: Complemental strand, 8988653 - 8988288
Alignment:
Q  70 ctacatctacaataaatgattaaatacataaataaattcaataaaaatctcacttactttcactatacatagatgaactcatgataaccatatctatata 169  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||    
T  8988653 ctacatctataataaatgattaaatacataaataaattcaataaaaatctctcttactttcactatacatagatgaactcgtgataaccatatctatata 8988554  T
Q  170 gtaaaacagtaagaatcatgtctcaaaaaataattaatagtgttccaacaaaatggttcaattttctcagttcttgaagatagcaagcattgacagtaca 269  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||     
T  8988553 gtaaaagagtaagaatcatgtctcaaaaaataattaatagtgttccaacaaaatggctcaattttctcagttcttgaagatagcgagcattgacagtacg 8988454  T
Q  270 attgaagctccaatcatagccacagaacttgtagcagaactggcagctccagcgtcaggacctggtgctggagccaacgagggactaagatcttgggccg 369  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  8988453 attgaagctccgatcatagccacataacttgtagcagaactggcagctccaacgtcaggacctggtgctggagacaacgagggactaaggtcttgggccg 8988354  T
Q  370 aggctacggcggcgaatacgatgacaaaaatgaagaagaacttgattgaggtagctgatgatgatg 435  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  8988353 aggctacggcggcgaatacgatgacaaaaatgaagaagaacttgattgtggtagctgatgatgatg 8988288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 31 - 435
Target Start/End: Complemental strand, 8962919 - 8962504
Alignment:
Q  31 aagaagtaagaaggattcaatatcctcttttannnnnnn-ctacatctacaataaatgattaaatacataaataaattcaataaaaatctcacttacttt 129  Q
    |||||| | |||||||||||||||||||||||        |||||||||||||||||||||| | |||| || |||| ||||||||||||| || ||| |    
T  8962919 aagaagcacgaaggattcaatatcctcttttattttttttctacatctacaataaatgattataaacatgaacaaatacaataaaaatctctctcactct 8962820  T
Q  130 cactatacatagatgaactcatgataaccatatctatatagtaaaacagtaagaatcatgtctcaaaaaataattaatagtgttccaacaaaatgg---- 225  Q
    |||||||||||||||||||| |||||| || ||| |||| | ||||||  ||||||||||| |||| ||||||||||||||||||| ||||||||         
T  8962819 cactatacatagatgaactcgtgataatcagatcaatattgaaaaacatcaagaatcatgtgtcaagaaataattaatagtgttcccacaaaatgacctc 8962720  T
Q  226 ------ttcaattttctcagttcttgaagatagcaagcattgacagtacaattgaagctccaatcatagccacagaacttgtagcagaactggcagctcc 319  Q
          || |||||| ||| |||||||||||||| |||||||| || |||||||||||||| |||||||||||||||| || | |||| | |||| ||||    
T  8962719 atagtctttaattttttcaattcttgaagatagcgagcattgaaagcacaattgaagctccgatcatagccacagaacctgcaacagatccggcaactcc 8962620  T
Q  320 agcgtcaggacctggtgctggagccaacgagggactaagatcttgggccgaggctacggcggcgaatacgatgacaaaaatgaagaagaacttgattgag 419  Q
    ||| |||||||||||||||||||| |||||||||||||| |||||||||||||| || ||||| || ||||||||||||   ||||| ||||| |||| |    
T  8962619 agcatcaggacctggtgctggagctaacgagggactaaggtcttgggccgaggccacagcggcaaacacgatgacaaaaccaaagaacaacttcattgtg 8962520  T
Q  420 gtagctgatgatgatg 435  Q
    ||||| ||||||||||    
T  8962519 gtagcagatgatgatg 8962504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 197 - 435
Target Start/End: Complemental strand, 8957299 - 8957064
Alignment:
Q  197 aaataattaatagtgttccaacaaaatggttcaattttctcagttcttgaagatagcaagcattgacagtacaattgaagctccaatcatagccacagaa 296  Q
    ||||||||||||||||||| |||||||||   | || ||| |||||||||| || || | ||||||||| |||||||||||||| |||||||||||||||    
T  8957299 aaataattaatagtgttcccacaaaatgg---acttctcttagttcttgaaaatggcgaccattgacagcacaattgaagctccgatcatagccacagaa 8957203  T
Q  297 cttgtagcagaactggcagctccagcgtcaggacctggtgctggagccaacgagggactaagatcttgggccgaggctacggcggcgaatacgatgacaa 396  Q
    |||||| || | | ||||||||||||||||||||| ||||||||||| ||||| |||||||| |||||||||||||| |||| || ||||||||||||||    
T  8957202 cttgtaacaaatccggcagctccagcgtcaggaccgggtgctggagctaacgacggactaaggtcttgggccgaggccacggtggtgaatacgatgacaa 8957103  T
Q  397 aaatgaagaagaacttgattgaggtagctgatgatgatg 435  Q
    ||| || ||| ||||| |||| |||||||||||||||||    
T  8957102 aaacgacgaacaacttcattgtggtagctgatgatgatg 8957064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 180 - 435
Target Start/End: Complemental strand, 8965484 - 8965219
Alignment:
Q  180 aagaatcatgtctcaaaaaataattaatagtgttccaacaaaatgg----------ttcaattttctcagttcttgaagatagcaagcattgacagtaca 269  Q
    ||||||||||| |||| ||||||| ||||||||||| |||||||||          || |||||||||||||||||||||| || ||||||||||| |||    
T  8965484 aagaatcatgtgtcaagaaataatcaatagtgttcccacaaaatggcctcatagtctttaattttctcagttcttgaagattgcgagcattgacagcaca 8965385  T
Q  270 attgaagctccaatcatagccacagaacttgtagcagaactggcagctccagcgtcaggacctggtgctggagccaacgagggactaagatcttgggccg 369  Q
    ||||||||||| ||||| |||| |||||||||| |||| | |||||||||||||||||||| |||||||||||||||||| |||||||| ||||||||||    
T  8965384 attgaagctccgatcattgccatagaacttgtaacagatccggcagctccagcgtcaggacttggtgctggagccaacgacggactaaggtcttgggccg 8965285  T
Q  370 aggctacggcggcgaatacgatgacaaaaatgaagaagaacttgattgaggtagctgatgatgatg 435  Q
    |||| || | ||| || ||||||||||||| |||||| || || |||| ||||| |||||||||||    
T  8965284 aggccactgtggcaaagacgatgacaaaaacgaagaacaatttcattgtggtagttgatgatgatg 8965219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 246 - 383
Target Start/End: Complemental strand, 9101360 - 9101223
Alignment:
Q  246 aagatagcaagcattgacagtacaattgaagctccaatcatagccacagaacttgtagcagaactggcagctccagcgtcaggacctggtgctggagcca 345  Q
    ||||| || |||||||||| |||||||||| |||| ||||||||||| ||||||||| ||||||  ||||||||||| ||||| ||||||||||||||||    
T  9101360 aagatggcgagcattgacaatacaattgaaactccgatcatagccactgaacttgtaacagaaccagcagctccagcatcagggcctggtgctggagcca 9101261  T
Q  346 acgagggactaagatcttgggccgaggctacggcggcg 383  Q
    |||||||||| || | |||||| ||||| |||| ||||    
T  9101260 acgagggactgaggttttgggcagaggccacggtggcg 9101223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 242 - 383
Target Start/End: Complemental strand, 9029249 - 9029108
Alignment:
Q  242 cttgaagatagcaagcattgacagtacaattgaagctccaatcatagccacagaacttgtagcagaactggcagctccagcgtcaggacctggtgctgga 341  Q
    ||||||||| || ||||||||||  ||||||||| |||| ||||||||| | |||||||||  ||| |  ||||||||||| ||||||||||||||||||    
T  9029249 cttgaagatggcgagcattgacaacacaattgaaactccgatcatagccgctgaacttgtaatagatccagcagctccagcatcaggacctggtgctgga 9029150  T
Q  342 gccaacgagggactaagatcttgggccgaggctacggcggcg 383  Q
    |||||||| |||||||| |||||||| ||||| |||| ||||    
T  9029149 gccaacgaaggactaaggtcttgggcagaggccacggtggcg 9029108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 242 - 373
Target Start/End: Complemental strand, 8747090 - 8746959
Alignment:
Q  242 cttgaagatagcaagcattgacagtacaattgaagctccaatcatagccacagaacttgtagcagaactggcagctccagcgtcaggacctggtgctgga 341  Q
    ||||||||| || ||||||||||  ||||||||| |||||||||||||||| ||| ||||| |||| |   |||||||| | ||||||||||||||||||    
T  8747090 cttgaagatggcgagcattgacaacacaattgaaactccaatcatagccactgaatttgtaacagatccaacagctccaacatcaggacctggtgctgga 8746991  T
Q  342 gccaacgagggactaagatcttgggccgaggc 373  Q
    |||||||||||||| || |||||||| |||||    
T  8746990 gccaacgagggactgaggtcttgggcagaggc 8746959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 242 - 373
Target Start/End: Complemental strand, 9034756 - 9034625
Alignment:
Q  242 cttgaagatagcaagcattgacagtacaattgaagctccaatcatagccacagaacttgtagcagaactggcagctccagcgtcaggacctggtgctgga 341  Q
    ||||||||| || ||||||||||  ||||||||| |||| ||||||||||| ||||||| | |||| |  ||||||||||| |||||||||||||| |||    
T  9034756 cttgaagatggcgagcattgacaacacaattgaaactccgatcatagccaccgaacttgcaacagatccagcagctccagcatcaggacctggtgccgga 9034657  T
Q  342 gccaacgagggactaagatcttgggccgaggc 373  Q
    |||||||| |||||||| |||||||| |||||    
T  9034656 gccaacgaaggactaaggtcttgggcagaggc 9034625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 242 - 409
Target Start/End: Complemental strand, 9023586 - 9023416
Alignment:
Q  242 cttgaagatagcaagcattgacagtacaattgaagctccaatcatagccacagaacttgtagcagaactggcagctccagcgtcaggacctggtgctgga 341  Q
    ||||||||| || |||||||||| |||||  |||  ||| | ||||||||| ||||||||| |||| |  ||||||||||| |||||||||||||| |||    
T  9023586 cttgaagatggcgagcattgacaatacaaccgaaattccgaccatagccactgaacttgtaacagatccagcagctccagcatcaggacctggtgccgga 9023487  T
Q  342 gccaacgagggactaagatcttgggccgaggctac---ggcggcgaatacgatgacaaaaatgaagaagaa 409  Q
    ||||||||||||||||| |||||||| ||||| ||   ||||||||| | |||||| |||| |||| ||||    
T  9023486 gccaacgagggactaaggtcttgggcagaggccactgtggcggcgaagatgatgaccaaaaagaaggagaa 9023416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 243 - 383
Target Start/End: Complemental strand, 9026289 - 9026149
Alignment:
Q  243 ttgaagatagcaagcattgacagtacaattgaagctccaatcatagccacagaacttgtagcagaactggcagctccagcgtcaggacctggtgctggag 342  Q
    |||||||| || | |||||||| ||||| |||| |||| ||||| ||||| ||||||||| |||| |  ||| ||||||| |||| ||||||||||||||    
T  9026289 ttgaagatggcgatcattgacaatacaactgaaactccgatcattgccactgaacttgtaacagatccagcaactccagcatcagaacctggtgctggag 9026190  T
Q  343 ccaacgagggactaagatcttgggccgaggctacggcggcg 383  Q
    ||||||| ||||||||||||||||| ||||| |||| ||||    
T  9026189 ccaacgaaggactaagatcttgggcagaggccacggtggcg 9026149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 70 - 148
Target Start/End: Complemental strand, 8965626 - 8965548
Alignment:
Q  70 ctacatctacaataaatgattaaatacataaataaattcaataaaaatctcacttactttcactatacatagatgaact 148  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||| || ||| ||| ||||||||||||||||    
T  8965626 ctacatctacaataaatgattaaatacataaataaatacaataaaaatctctctcactctcaatatacatagatgaact 8965548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 238 - 370
Target Start/End: Complemental strand, 9108934 - 9108802
Alignment:
Q  238 agttcttgaagatagcaagcattgacagtacaattgaagctccaatcatagccacagaacttgtagcagaactggcagctccagcgtcaggacctggtgc 337  Q
    ||||||| ||||  |||||||||||||  |||||||||||||| ||||| ||||| ||||||||| |||| | |||||||||  | |||||||||| |||    
T  9108934 agttcttcaagagtgcaagcattgacaagacaattgaagctccgatcatggccactgaacttgtaacagatccggcagctccgacatcaggacctgatgc 9108835  T
Q  338 tggagccaacgagggactaagatcttgggccga 370  Q
    ||||||||| |||||||| || ||||| |||||    
T  9108834 tggagccaatgagggactgaggtcttgagccga 9108802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 238 - 379
Target Start/End: Complemental strand, 8755721 - 8755580
Alignment:
Q  238 agttcttgaagatagcaagcattgacagtacaattgaagctccaatcatagccacagaacttgtagcagaactggcagctccagcgtcaggacctggtgc 337  Q
    ||||||||||||| || ||||| ||||  | ||| ||||||||||||||||| || ||| ||||| |||| |  ||||| || || |||||| |||||||    
T  8755721 agttcttgaagatggcgagcatagacaaaataatcgaagctccaatcatagcaactgaatttgtaacagatccagcagcaccggcatcaggatctggtgc 8755622  T
Q  338 tggagccaacgagggactaagatcttgggccgaggctacggc 379  Q
     ||||||||||||||||| || ||||| ||||| || |||||    
T  8755621 cggagccaacgagggactgaggtcttgagccgaagccacggc 8755580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 236 - 373
Target Start/End: Complemental strand, 9019430 - 9019293
Alignment:
Q  236 tcagttcttgaagatagcaagcattgacagtacaattgaagctccaatcatagccacagaacttgtagcagaactggcagctccagcgtcaggacctggt 335  Q
    ||||||||| ||||| |||||||||||||  |||||||||||||| |||||||| || ||||| ||| |||| |    ||| ||| | ||||||||||||    
T  9019430 tcagttcttcaagatggcaagcattgacaacacaattgaagctccgatcatagcaactgaactcgtaacagatccacaagccccaacatcaggacctggt 9019331  T
Q  336 gctggagccaacgagggactaagatcttgggccgaggc 373  Q
    || |||||  | ||||||||||| ||||| ||||||||    
T  9019330 gccggagcggatgagggactaaggtcttgagccgaggc 9019293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 243 - 373
Target Start/End: Complemental strand, 9015558 - 9015428
Alignment:
Q  243 ttgaagatagcaagcattgacagtacaattgaagctccaatcatagccacagaacttgtagcagaactggcagctccagcgtcaggacctggtgctggag 342  Q
    |||||||| || |||||||||| |||||||||| |||||| ||||| ||| ||| ||||| || | |  || ||||| || |||||||||||||| ||||    
T  9015558 ttgaagatggcgagcattgacaatacaattgaaactccaaccatagtcactgaatttgtaacatatccagctgctccggcatcaggacctggtgccggag 9015459  T
Q  343 ccaacgagggactaagatcttgggccgaggc 373  Q
     ||||||||| || || ||||| ||||||||    
T  9015458 acaacgaggggctgaggtcttgagccgaggc 9015428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 233 - 376
Target Start/End: Complemental strand, 9112252 - 9112109
Alignment:
Q  233 ttctcagttcttgaagatagcaagcattgacagtacaattgaagctccaatcatagccacagaacttgtagcagaactggcagctccagcgtcaggacct 332  Q
    |||||| | ||| |||||||||||||||||||  |||||  ||||||| ||||||||||| | | |||||  ||| |   ||||||| |  |||||  ||    
T  9112252 ttctcaatgcttaaagatagcaagcattgacaacacaatcaaagctcccatcatagccactggatttgtaagagatccaacagctccggtatcaggtgct 9112153  T
Q  333 ggtgctggagccaacgagggactaagatcttgggccgaggctac 376  Q
    ||||| ||||||||||||||||| || |||||||||||| ||||    
T  9112152 ggtgccggagccaacgagggactgaggtcttgggccgagactac 9112109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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