View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0672_low_5 (Length: 455)
Name: NF0672_low_5
Description: NF0672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0672_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 14 - 434
Target Start/End: Complemental strand, 5695958 - 5695538
Alignment:
| Q |
14 |
agatagcagaattgcagcatttgcaggggcaagagagagccccatcatccctccacgcaattcattaggtacatacctgcaaacaaggaaattaaaaata |
113 |
Q |
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| T |
5695958 |
agatagcagaattgcagcatttgcaggggcaagagagagccccatcatccctccacgcaattcattaggtacatacctgcaaacaaggaaattaaaaata |
5695859 |
T |
|
| Q |
114 |
taaatccattattgagcaaacaaagaagtacaactctttgtaatgagattacatggtcctcaatctagcaagtgatggtaaaacgaagccaacacaagca |
213 |
Q |
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| T |
5695858 |
taaatccattattgagcaaacaaagaagtacaactctttgtaatgagattacatggtcctcaatctagcaagtgatggtaaaacgaagccaacacaagca |
5695759 |
T |
|
| Q |
214 |
tgaaacaagctaaaaagtgtcacaagaactccaatttcctgcacatgaaaaattgatgagtcaaatgtagacttcaagattgaaaatctgaccaaaagta |
313 |
Q |
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| T |
5695758 |
tgaaacaagctaaaaagtgtcacaagaactccaatttcctgcacatgaaaaattgatgagtcaaatgtagacttcaagattgaaaatctgaccaaaagta |
5695659 |
T |
|
| Q |
314 |
tatttgagactttttaaagacaataacaactgcacctgatagtcataggccacaatagacaagagaacagccaatatgatgtatgcaaatactaggcagt |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5695658 |
tatttgagactttttaaagacaataacaactgcacctgatagtcataggccacaatagacaagagaacagccaatatgatgtatgcaaatactaggcagt |
5695559 |
T |
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| Q |
414 |
cctcaattctaagtgatgatg |
434 |
Q |
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| T |
5695558 |
cctcaattctaagtgatgatg |
5695538 |
T |
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