View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0672_low_7 (Length: 407)

Name: NF0672_low_7
Description: NF0672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0672_low_7
NF0672_low_7
[»] chr1 (22 HSPs)
chr1 (13-254)||(16401770-16401994)
chr1 (332-385)||(16401639-16401692)
chr1 (137-193)||(44822202-44822258)
chr1 (44-114)||(17901794-17901866)
chr1 (44-122)||(7703093-7703174)
chr1 (141-182)||(22823287-22823328)
chr1 (44-105)||(38056672-38056735)
chr1 (44-105)||(50544861-50544924)
chr1 (65-122)||(6834148-6834206)
chr1 (137-193)||(7052084-7052141)
chr1 (132-173)||(22823259-22823300)
chr1 (44-110)||(8306590-8306658)
chr1 (43-105)||(22145665-22145729)
chr1 (47-105)||(24719514-24719573)
chr1 (137-193)||(24723532-24723588)
chr1 (44-105)||(28476734-28476797)
chr1 (13-55)||(25091388-25091429)
chr1 (40-111)||(20588619-20588694)
chr1 (40-111)||(20593157-20593232)
chr1 (156-192)||(22350594-22350630)
chr1 (44-110)||(34392752-34392820)
chr1 (44-110)||(35895083-35895151)
[»] scaffold0035 (2 HSPs)
scaffold0035 (44-146)||(43787-43889)
scaffold0035 (44-146)||(39095-39197)
[»] scaffold0205 (1 HSPs)
scaffold0205 (44-146)||(5616-5718)
[»] chr5 (11 HSPs)
chr5 (44-145)||(20313226-20313327)
chr5 (137-193)||(30138155-30138211)
chr5 (78-150)||(16063630-16063702)
chr5 (137-193)||(17875981-17876037)
chr5 (40-105)||(23199203-23199270)
chr5 (137-193)||(31456775-31456831)
chr5 (82-159)||(10774818-10774899)
chr5 (44-105)||(18744863-18744926)
chr5 (44-110)||(32607316-32607384)
chr5 (44-105)||(16063740-16063803)
chr5 (137-193)||(36508814-36508871)
[»] chr3 (21 HSPs)
chr3 (44-146)||(25202084-25202186)
chr3 (44-145)||(48043478-48043579)
chr3 (48-122)||(22841283-22841359)
chr3 (138-193)||(6805000-6805055)
chr3 (139-193)||(24177843-24177897)
chr3 (51-122)||(45803338-45803411)
chr3 (138-175)||(13522422-13522459)
chr3 (43-110)||(54875473-54875542)
chr3 (44-122)||(12917306-12917386)
chr3 (78-117)||(13520370-13520409)
chr3 (44-105)||(14152399-14152462)
chr3 (44-105)||(14641548-14641611)
chr3 (44-105)||(17208513-17208576)
chr3 (44-105)||(29907628-29907691)
chr3 (44-105)||(29948794-29948857)
chr3 (44-105)||(29997948-29998011)
chr3 (342-385)||(17393430-17393475)
chr3 (342-375)||(14177263-14177296)
chr3 (187-251)||(17393553-17393615)
chr3 (44-110)||(3527157-3527225)
chr3 (44-110)||(6156695-6156762)
[»] chr2 (18 HSPs)
chr2 (44-145)||(36734451-36734552)
chr2 (137-193)||(1383724-1383780)
chr2 (137-182)||(22501795-22501840)
chr2 (137-182)||(22509729-22509774)
chr2 (137-193)||(24884285-24884341)
chr2 (44-122)||(34491240-34491320)
chr2 (44-105)||(21315476-21315539)
chr2 (44-105)||(21335266-21335329)
chr2 (6-55)||(23149642-23149690)
chr2 (6-55)||(23561432-23561480)
chr2 (124-173)||(25584343-25584391)
chr2 (44-110)||(23801480-23801548)
chr2 (44-105)||(21369282-21369345)
chr2 (44-105)||(23610615-23610678)
chr2 (137-182)||(25584374-25584420)
chr2 (44-104)||(20005971-20006032)
chr2 (137-173)||(357716-357752)
chr2 (156-192)||(18388328-18388364)
[»] scaffold0086 (3 HSPs)
scaffold0086 (48-146)||(35490-35588)
scaffold0086 (48-122)||(35341-35415)
scaffold0086 (44-122)||(35186-35266)
[»] chr8 (22 HSPs)
chr8 (44-105)||(21676500-21676561)
chr8 (44-105)||(21676593-21676654)
chr8 (44-105)||(21678846-21678907)
chr8 (44-173)||(22345086-22345216)
chr8 (44-173)||(22356746-22356876)
chr8 (48-122)||(22483758-22483834)
chr8 (137-193)||(20517128-20517184)
chr8 (137-193)||(22345047-22345103)
chr8 (137-193)||(22356707-22356763)
chr8 (44-105)||(22208258-22208321)
chr8 (6-55)||(19989949-19989998)
chr8 (138-182)||(36305777-36305821)
chr8 (44-105)||(18816295-18816358)
chr8 (65-125)||(22483907-22483968)
chr8 (44-110)||(21399701-21399769)
chr8 (44-110)||(21794194-21794262)
chr8 (44-105)||(36732412-36732475)
chr8 (342-375)||(23217872-23217905)
chr8 (40-110)||(18834407-18834478)
chr8 (43-105)||(21514680-21514744)
chr8 (78-122)||(36732513-36732557)
chr8 (156-192)||(42265647-42265683)
[»] chr4 (16 HSPs)
chr4 (78-150)||(35660835-35660907)
chr4 (40-94)||(12424286-12424342)
chr4 (44-105)||(14631124-14631187)
chr4 (44-105)||(16296927-16296990)
chr4 (40-105)||(33186892-33186959)
chr4 (332-373)||(16225376-16225417)
chr4 (137-193)||(19434730-19434787)
chr4 (44-107)||(25513838-25513903)
chr4 (137-182)||(45314210-45314254)
chr4 (44-105)||(9638999-9639062)
chr4 (338-384)||(19559348-19559395)
chr4 (48-104)||(26446197-26446255)
chr4 (44-110)||(9622473-9622541)
chr4 (44-110)||(10273367-10273435)
chr4 (154-182)||(14353888-14353916)
chr4 (44-110)||(55583180-55583248)
[»] chr6 (14 HSPs)
chr6 (79-150)||(34140556-34140627)
chr6 (79-150)||(34153172-34153243)
chr6 (44-104)||(34140456-34140516)
chr6 (44-95)||(34153072-34153123)
chr6 (137-193)||(18585603-18585659)
chr6 (186-251)||(17374992-17375055)
chr6 (44-122)||(29045243-29045323)
chr6 (44-105)||(21683075-21683138)
chr6 (44-110)||(10446201-10446269)
chr6 (40-105)||(20410508-20410575)
chr6 (44-105)||(23658078-23658141)
chr6 (342-375)||(15889933-15889966)
chr6 (342-375)||(22585773-22585806)
chr6 (342-375)||(22590604-22590637)
[»] chr7 (23 HSPs)
chr7 (137-193)||(14274147-14274203)
chr7 (186-251)||(15977914-15977977)
chr7 (44-120)||(20252182-20252260)
chr7 (44-104)||(38299738-38299800)
chr7 (44-105)||(708429-708492)
chr7 (44-105)||(15575649-15575712)
chr7 (137-193)||(708592-708649)
chr7 (44-122)||(13744510-13744591)
chr7 (44-110)||(58413-58481)
chr7 (40-94)||(43276740-43276796)
chr7 (44-105)||(8488094-8488157)
chr7 (44-105)||(8513753-8513816)
chr7 (44-105)||(19195601-19195663)
chr7 (40-122)||(19283026-19283112)
chr7 (44-149)||(33556105-33556210)
chr7 (44-105)||(43745645-43745708)
chr7 (44-105)||(47095441-47095504)
chr7 (137-193)||(12754736-12754793)
chr7 (44-107)||(16250222-16250287)
chr7 (44-110)||(13315082-13315150)
chr7 (40-110)||(15720763-15720835)
chr7 (44-94)||(18874665-18874717)
chr7 (157-193)||(47974983-47975019)
[»] scaffold0594 (1 HSPs)
scaffold0594 (44-122)||(2219-2299)
[»] scaffold0230 (1 HSPs)
scaffold0230 (137-193)||(6866-6922)
[»] scaffold0026 (2 HSPs)
scaffold0026 (137-193)||(9949-10005)
scaffold0026 (137-193)||(22046-22102)
[»] scaffold0004 (2 HSPs)
scaffold0004 (44-122)||(66072-66152)
scaffold0004 (44-110)||(75921-75989)
[»] scaffold0819 (1 HSPs)
scaffold0819 (82-159)||(5183-5264)
[»] scaffold0676 (1 HSPs)
scaffold0676 (44-105)||(2870-2933)
[»] scaffold0139 (3 HSPs)
scaffold0139 (137-182)||(40294-40339)
scaffold0139 (124-173)||(40244-40292)
scaffold0139 (137-173)||(40275-40311)
[»] scaffold0853 (1 HSPs)
scaffold0853 (40-94)||(2450-2506)
[»] scaffold0431 (1 HSPs)
scaffold0431 (40-94)||(5633-5689)
[»] scaffold1186 (1 HSPs)
scaffold1186 (44-105)||(2009-2072)
[»] scaffold0231 (1 HSPs)
scaffold0231 (44-105)||(17521-17584)
[»] scaffold0220 (1 HSPs)
scaffold0220 (44-105)||(13938-14001)
[»] scaffold0056 (1 HSPs)
scaffold0056 (44-105)||(18264-18327)
[»] scaffold0005 (1 HSPs)
scaffold0005 (44-105)||(186196-186259)
[»] scaffold0505 (1 HSPs)
scaffold0505 (44-105)||(4926-4988)
[»] scaffold0061 (2 HSPs)
scaffold0061 (44-104)||(14586-14648)
scaffold0061 (44-104)||(23644-23706)
[»] scaffold0040 (1 HSPs)
scaffold0040 (137-193)||(106232-106289)
[»] scaffold0878 (1 HSPs)
scaffold0878 (44-105)||(3422-3485)
[»] scaffold0247 (1 HSPs)
scaffold0247 (44-105)||(1065-1128)
[»] scaffold0369 (1 HSPs)
scaffold0369 (44-105)||(15616-15678)
[»] scaffold0174 (3 HSPs)
scaffold0174 (65-122)||(11588-11646)
scaffold0174 (44-103)||(5445-5506)
scaffold0174 (44-110)||(19840-19908)
[»] scaffold0439 (1 HSPs)
scaffold0439 (138-175)||(12182-12219)
[»] scaffold0017 (1 HSPs)
scaffold0017 (153-182)||(26626-26655)
[»] scaffold0414 (1 HSPs)
scaffold0414 (40-110)||(11156-11228)
[»] scaffold0379 (1 HSPs)
scaffold0379 (44-110)||(10932-10999)
[»] scaffold0308 (1 HSPs)
scaffold0308 (156-192)||(13318-13354)
[»] scaffold0180 (1 HSPs)
scaffold0180 (156-192)||(28467-28503)
[»] scaffold0149 (1 HSPs)
scaffold0149 (157-193)||(21464-21500)
[»] scaffold0125 (1 HSPs)
scaffold0125 (154-182)||(7314-7342)
[»] scaffold0116 (1 HSPs)
scaffold0116 (156-192)||(35602-35638)
[»] scaffold0048 (1 HSPs)
scaffold0048 (44-110)||(68726-68794)
[»] scaffold0031 (1 HSPs)
scaffold0031 (44-110)||(127343-127411)


Alignment Details
Target: chr1 (Bit Score: 159; Significance: 1e-84; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 13 - 254
Target Start/End: Complemental strand, 16401994 - 16401770
Alignment:
Q  13 gagagattgtagaacgttgttcgtatgaatttaaggtaagggtcggactagcttctctaataatgggtttataattctgaaatagggtttaacatgtttg 112  Q
    |||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  16401994 gagagattgtagaacgttgttcgtctgaatttaaggtaagggtgggactaacttctctaataatgggtttataattctgaaatagggtttaacatgtttg 16401895  T
Q  113 ttgttattttattttgatgattagagaagttagggttttgaaaagaagttagggttttgaattgcaatttaattgatgaaattgcatgctcttg--gtat 210  Q
    ||||||||||||||||||||||||||||||||||||||                   |||||||||||||||||||||||||||||||||||||  ||||    
T  16401894 ttgttattttattttgatgattagagaagttagggttt-------------------tgaattgcaatttaattgatgaaattgcatgctcttggtgtat 16401814  T
Q  211 atatatatttggatacttgatgaattatgctcaaatgatgattt 254  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  16401813 atatatatttggatacttgatgaattatgctcaaatgatgattt 16401770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 332 - 385
Target Start/End: Complemental strand, 16401692 - 16401639
Alignment:
Q  332 atatcttgaattgggtatgaattatgttgagttgtagttgttgattgtgatgat 385  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  16401692 atatcatgaattgggtatgaattatgttgagttgtagttgttgattgtgatgat 16401639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 137 - 193
Target Start/End: Original strand, 44822202 - 44822258
Alignment:
Q  137 agaagttagggttttgaaaagaagttagggttttgaattgcaatttaattgatgaaa 193  Q
    ||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||    
T  44822202 agaagttagagttttgaaaagaagttagggttttgaattgcaatttgattgttgaaa 44822258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 44 - 114
Target Start/End: Original strand, 17901794 - 17901866
Alignment:
Q  44 taaggtaagggtcggactagctt-ctctaataatgggtt-tataattctgaaatagggtttaacatgtttgtt 114  Q
    ||||||||||||  ||||||||| ||||||||||||||| ||||||||||||| ||||||||||||| |||||    
T  17901794 taaggtaagggtgagactagctttctctaataatgggttgtataattctgaaaaagggtttaacatggttgtt 17901866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 44 - 122
Target Start/End: Complemental strand, 7703174 - 7703093
Alignment:
Q  44 taaggtaagggtcggactagctt-ctctaataatgggtttataattctgaaata--gggtttaacatgtttgttgttatttt 122  Q
    |||||||||||| |||||||||| ||||||||||| ||||||||||  |||| |  ||||||||||||||||||||| ||||    
T  7703174 taaggtaagggtgggactagctttctctaataatgagtttataatttggaaaaaaagggtttaacatgtttgttgttgtttt 7703093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 141 - 182
Target Start/End: Original strand, 22823287 - 22823328
Alignment:
Q  141 gttagggttttgaaaagaagttagggttttgaattgcaattt 182  Q
    |||||||||||||||||||| |||||||||||||||||||||    
T  22823287 gttagggttttgaaaagaagatagggttttgaattgcaattt 22823328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 44 - 105
Target Start/End: Original strand, 38056672 - 38056735
Alignment:
Q  44 taaggtaagggtcggactagctt-ctctaataatgggtt-tataattctgaaatagggtttaac 105  Q
    |||||||||||| |||||||||| ||||| ||||||||| ||||||||||||| ||||||||||    
T  38056672 taaggtaagggtgggactagctttctctagtaatgggttgtataattctgaaaaagggtttaac 38056735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 44 - 105
Target Start/End: Complemental strand, 50544924 - 50544861
Alignment:
Q  44 taaggtaagggtcggactagctt-ctctaataatgggtt-tataattctgaaatagggtttaac 105  Q
    ||||||||||||  ||||||||| ||||||||||||||| ||||||||||||| ||||||||||    
T  50544924 taaggtaagggtgagactagctttctctaataatgggttgtataattctgaaaaagggtttaac 50544861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 122
Target Start/End: Complemental strand, 6834206 - 6834148
Alignment:
Q  65 ttctctaataatgggtt-tataattctgaaatagggtttaacatgtttgttgttatttt 122  Q
    ||||||||||||| ||| ||||||||||||| ||||||||||||| |||||||| ||||    
T  6834206 ttctctaataatgagttgtataattctgaaaaagggtttaacatggttgttgttgtttt 6834148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 137 - 193
Target Start/End: Original strand, 7052084 - 7052141
Alignment:
Q  137 agaagttagggttttgaaaagaagttaggg-ttttgaattgcaatttaattgatgaaa 193  Q
    ||||||||| ||||| |||||||||||||| |||||||||||||||| |||| |||||    
T  7052084 agaagttagagttttaaaaagaagttagggtttttgaattgcaatttgattgttgaaa 7052141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 132 - 173
Target Start/End: Original strand, 22823259 - 22823300
Alignment:
Q  132 attagagaagttagggttttgaaaagaagttagggttttgaa 173  Q
    |||| |||||||||||||||||||||| ||||||||||||||    
T  22823259 attatagaagttagggttttgaaaagaggttagggttttgaa 22823300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 110
Target Start/End: Complemental strand, 8306658 - 8306590
Alignment:
Q  44 taaggtaagggtcggactagctt-ctctaataatgggtt-tataattctgaaatagggtttaacatgtt 110  Q
    ||||||||| || |||||||||| ||||||||||||||| ||||||||| |||  ||||||||||||||    
T  8306658 taaggtaagagtgggactagctttctctaataatgggttgtataattctaaaaaggggtttaacatgtt 8306590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 105
Target Start/End: Original strand, 22145665 - 22145729
Alignment:
Q  43 ttaaggtaagggtcggactagctt-ctctaataatgggtt-tataattctgaaatagggtttaac 105  Q
    ||||||||||||| |||||| ||| ||||||||||||||| | ||||||||||| ||||||||||    
T  22145665 ttaaggtaagggtgggactaactttctctaataatgggttgtttaattctgaaaaagggtttaac 22145729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 105
Target Start/End: Original strand, 24719514 - 24719573
Alignment:
Q  47 ggtaagggtcggactagctt-ctctaataatgggtt-tataattctgaaatagggtttaac 105  Q
    ||||||||| |||||||||| ||||||||||||||| ||||||||||||| ||||||||||    
T  24719514 ggtaagggt-ggactagctttctctaataatgggttgtataattctgaaaaagggtttaac 24719573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 193
Target Start/End: Original strand, 24723532 - 24723588
Alignment:
Q  137 agaagttagggttttgaaaagaagttagggttttgaattgcaatttaattgatgaaa 193  Q
    ||||||||| ||||| ||||||||||| |||||| ||||||||||| |||| |||||    
T  24723532 agaagttagagttttaaaaagaagttatggtttttaattgcaatttgattgttgaaa 24723588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 44 - 105
Target Start/End: Original strand, 28476734 - 28476797
Alignment:
Q  44 taaggtaagggtcggactagctt-ctctaataatgggtt-tataattctgaaatagggtttaac 105  Q
    |||||||||||| ||||||| || ||||||||||| ||| ||||||||||||| ||||||||||    
T  28476734 taaggtaagggtgggactagatttctctaataatgagttgtataattctgaaaaagggtttaac 28476797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 25091388 - 25091429
Alignment:
Q  13 gagagattgtagaacgttgttcgtatgaatttaaggtaagggt 55  Q
    |||||||||||||||||||||||| |||| |||||||||||||    
T  25091388 gagagattgtagaacgttgttcgtctgaa-ttaaggtaagggt 25091429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 111
Target Start/End: Complemental strand, 20588694 - 20588619
Alignment:
Q  40 aatttaaggtaagggtcggactagc-ttctctaataatgggtt-tataattct--gaaatagggtttaacatgttt 111  Q
    |||||||||||||||| ||| |||| ||||||||||||||||| ||| |||||   ||| ||||||||||||||||    
T  20588694 aatttaaggtaagggtgggattagctttctctaataatgggttgtatgattctaaaaaaaagggtttaacatgttt 20588619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 111
Target Start/End: Complemental strand, 20593232 - 20593157
Alignment:
Q  40 aatttaaggtaagggtcggactagc-ttctctaataatgggtt-tataattct--gaaatagggtttaacatgttt 111  Q
    |||||||||||||||| ||| |||| ||||||||||||||||| ||| |||||   ||| ||||||||||||||||    
T  20593232 aatttaaggtaagggtgggattagctttctctaataatgggttgtatgattctaaaaaaaagggtttaacatgttt 20593157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 156 - 192
Target Start/End: Complemental strand, 22350630 - 22350594
Alignment:
Q  156 agaagttagggttttgaattgcaatttaattgatgaa 192  Q
    ||||||||||||||||||||||||||| |||| ||||    
T  22350630 agaagttagggttttgaattgcaatttgattgttgaa 22350594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 44 - 110
Target Start/End: Complemental strand, 34392820 - 34392752
Alignment:
Q  44 taaggtaagggtcggactagctt-ctctaataatgggtt-tataattctgaaatagggtttaacatgtt 110  Q
    ||||||||||||  ||||||||| ||||||||||||||| ||| ||||| |||  ||||||||||||||    
T  34392820 taaggtaagggtgtgactagctttctctaataatgggttgtatgattctaaaaaggggtttaacatgtt 34392752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 44 - 110
Target Start/End: Complemental strand, 35895151 - 35895083
Alignment:
Q  44 taaggtaagggtcggactagcttc-tctaataatgggtt-tataattctgaaatagggtttaacatgtt 110  Q
    ||||||| |||| ||||||||||  |||||||||||||| ||| ||||||||| ||| |||||||||||    
T  35895151 taaggtatgggtaggactagctttatctaataatgggttgtatgattctgaaaaaggttttaacatgtt 35895083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 44 - 146
Target Start/End: Original strand, 43787 - 43889
Alignment:
Q  44 taaggtaagggtcggactagcttctctaataatgggtttataattctgaaatagggtttaacatgtttgttgttattttattttgatgattagagaagtt 143  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||  |||||||||||||||||| ||    
T  43787 taaggtaagggtgggactagcttctctaataatgggtttataattctgaaatagggtttaacatggttgttgttattagattttgatgattagagaaatt 43886  T
Q  144 agg 146  Q
    |||    
T  43887 agg 43889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 44 - 146
Target Start/End: Original strand, 39095 - 39197
Alignment:
Q  44 taaggtaagggtcggactagcttctctaataatgggtttataattctgaaatagggtttaacatgtttgttgttattttattttgatgattagagaagtt 143  Q
    |||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||| ||||||| |||||||| ||| ||||||||  |||||||| ||    
T  39095 taaggtaagggtgggactagcttctctaataatgggtttataattatgaaatacggtgtaacatggttgttgttgtttgattttgatctttagagaaatt 39194  T
Q  144 agg 146  Q
    |||    
T  39195 agg 39197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0205 (Bit Score: 79; Significance: 8e-37; HSPs: 1)
Name: scaffold0205
Description:

Target: scaffold0205; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 44 - 146
Target Start/End: Original strand, 5616 - 5718
Alignment:
Q  44 taaggtaagggtcggactagcttctctaataatgggtttataattctgaaatagggtttaacatgtttgttgttattttattttgatgattagagaagtt 143  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||| |||||||||||||||||| ||    
T  5616 taaggtaagggtgggactagcttctctaataatgggtttataattctgaaataggatttaacatggttgttgttgtttgattttgatgattagagaaatt 5715  T
Q  144 agg 146  Q
    |||    
T  5716 agg 5718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 3e-36; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 44 - 145
Target Start/End: Complemental strand, 20313327 - 20313226
Alignment:
Q  44 taaggtaagggtcggactagcttctctaataatgggtttataattctgaaatagggtttaacatgtttgttgttattttattttgatgattagagaagtt 143  Q
    |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||||||||||| ||    
T  20313327 taaggtaagggtgggactagcttctctaatagtgggtttataattctgaaatagggtttaacatggttgttgttgtttgattttgatgattagagaaatt 20313228  T
Q  144 ag 145  Q
    ||    
T  20313227 ag 20313226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 137 - 193
Target Start/End: Original strand, 30138155 - 30138211
Alignment:
Q  137 agaagttagggttttgaaaagaagttagggttttgaattgcaatttaattgatgaaa 193  Q
    ||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||    
T  30138155 agaagttagagttttgaaaagaagttagggttttgaattgcaatttgattgttgaaa 30138211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 78 - 150
Target Start/End: Complemental strand, 16063702 - 16063630
Alignment:
Q  78 ggtttataattctgaaatagggtttaacatgtttgttgttattttattttgatgattagagaagttagggttt 150  Q
    |||||||||||||| ||||| ||||||| || || ||||| ||| |||||||||||||||||| |||||||||    
T  16063702 ggtttataattctggaatagagtttaacgtggtttttgttgtttgattttgatgattagagaaattagggttt 16063630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 137 - 193
Target Start/End: Complemental strand, 17876037 - 17875981
Alignment:
Q  137 agaagttagggttttgaaaagaagttagggttttgaattgcaatttaattgatgaaa 193  Q
    ||||||||| |||||||| ||||||||||||||||||||||||||| |||| |||||    
T  17876037 agaagttagagttttgaagagaagttagggttttgaattgcaatttgattgttgaaa 17875981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 40 - 105
Target Start/End: Original strand, 23199203 - 23199270
Alignment:
Q  40 aatttaaggtaagggtcggactagc-ttctctaataatgggtt-tataattctgaaatagggtttaac 105  Q
    |||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||| | ||||||||    
T  23199203 aatttaaggtaagggtgggactagctttctctaataatgggttgtataattctgaaaaatggtttaac 23199270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 137 - 193
Target Start/End: Complemental strand, 31456831 - 31456775
Alignment:
Q  137 agaagttagggttttgaaaagaagttagggttttgaattgcaatttaattgatgaaa 193  Q
    ||||||||| |||||||||||||||||| | ||||||||||||||| |||| |||||    
T  31456831 agaagttagagttttgaaaagaagttagagctttgaattgcaatttgattgttgaaa 31456775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 82 - 159
Target Start/End: Original strand, 10774818 - 10774899
Alignment:
Q  82 tataattctgaaatagggtttaacatgtttgttgttatttt---attttgatgattagagaagttaggg-ttttgaaaagaa 159  Q
    ||||||||| ||| ||||||||||||| |||||||| || |   ||||||||||||| ||||||||||| ||||||||||||    
T  10774818 tataattctaaaacagggtttaacatggttgttgttgttgtttgattttgatgattaaagaagttagggtttttgaaaagaa 10774899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 44 - 105
Target Start/End: Complemental strand, 18744926 - 18744863
Alignment:
Q  44 taaggtaagggtcggactagctt-ctctaataatgggtt-tataattctgaaatagggtttaac 105  Q
    |||||||||||| |||||| ||| ||||||||||||||| ||||||||||||| ||||||||||    
T  18744926 taaggtaagggtgggactaactttctctaataatgggttgtataattctgaaaaagggtttaac 18744863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 110
Target Start/End: Original strand, 32607316 - 32607384
Alignment:
Q  44 taaggtaagggtcggactagc-ttctctaataatgggtt-tataattctgaaatagggtttaacatgtt 110  Q
    |||||||||||| |||||||| ||||||||||||||||| ||| ||||| |||  ||||||||||||||    
T  32607316 taaggtaagggtgggactagctttctctaataatgggttgtatgattctaaaaaggggtttaacatgtt 32607384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 44 - 105
Target Start/End: Complemental strand, 16063803 - 16063740
Alignment:
Q  44 taaggtaagggtcggactagctt-ctctaataatgggtt-tataattctgaaatagggtttaac 105  Q
    |||||||||||| |||||| ||| ||||||||||||||| ||||||||| ||| ||||||||||    
T  16063803 taaggtaagggtgggactacctttctctaataatgggttgtataattctaaaaaagggtttaac 16063740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 193
Target Start/End: Original strand, 36508814 - 36508871
Alignment:
Q  137 agaagttagggttttgaaaagaagttaggg-ttttgaattgcaatttaattgatgaaa 193  Q
    |||||| || ||||| |||||||||||||| |||||||||||||||| |||| |||||    
T  36508814 agaagtaagagttttaaaaagaagttagggtttttgaattgcaatttgattgttgaaa 36508871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 44 - 146
Target Start/End: Complemental strand, 25202186 - 25202084
Alignment:
Q  44 taaggtaagggtcggactagcttctctaataatgggtttataattctgaaatagggtttaacatgtttgttgttattttattttgatgattagagaagtt 143  Q
    |||||||||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||| |||||||| ||| |||||||||||||||||| ||    
T  25202186 taaggtaagggtgggactagcttcgctaataatgggtttataaatctgaaatagggtttaacatggttgttgttgtttgattttgatgattagagaaatt 25202087  T
Q  144 agg 146  Q
    |||    
T  25202086 agg 25202084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 44 - 145
Target Start/End: Original strand, 48043478 - 48043579
Alignment:
Q  44 taaggtaagggtcggactagcttctctaataatgggtttataattctgaaatagggtttaacatgtttgttgttattttattttgatgattagagaagtt 143  Q
    ||||||||||||   |||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||| ||| |||||||||||||||||| ||    
T  48043478 taaggtaagggtgtaactagcttctctaataatggatttataattttgaaatagggtttaacatgattgttgttgtttgattttgatgattagagaaatt 48043577  T
Q  144 ag 145  Q
    ||    
T  48043578 ag 48043579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 48 - 122
Target Start/End: Original strand, 22841283 - 22841359
Alignment:
Q  48 gtaagggtcggactagctt-ctctaataatgggtt-tataattctgaaatagggtttaacatgtttgttgttatttt 122  Q
    |||||||| |||||||||| ||||||||||||||| ||||||||||||| ||||||||||||| |||||||| ||||    
T  22841283 gtaagggtgggactagctttctctaataatgggttgtataattctgaaaaagggtttaacatgattgttgttgtttt 22841359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 138 - 193
Target Start/End: Original strand, 6805000 - 6805055
Alignment:
Q  138 gaagttagggttttgaaaagaagttagggttttgaattgcaatttaattgatgaaa 193  Q
    |||||||||||| |||||||||||||||||||||||||||||||| |||| |||||    
T  6805000 gaagttagggttgtgaaaagaagttagggttttgaattgcaatttgattgttgaaa 6805055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 139 - 193
Target Start/End: Original strand, 24177843 - 24177897
Alignment:
Q  139 aagttagggttttgaaaagaagttagggttttgaattgcaatttaattgatgaaa 193  Q
    ||||||| ||||| |||||||||||||||||||||||||||||| |||| |||||    
T  24177843 aagttagagttttaaaaagaagttagggttttgaattgcaatttgattgttgaaa 24177897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 51 - 122
Target Start/End: Original strand, 45803338 - 45803411
Alignment:
Q  51 agggtcggactagctt-ctctaataatgggtt-tataattctgaaatagggtttaacatgtttgttgttatttt 122  Q
    ||||| |||||||||| ||||||||||||||| ||||||||||||| ||||||||||||  |||||||| ||||    
T  45803338 agggtgggactagctttctctaataatgggttgtataattctgaaaaagggtttaacatcgttgttgttgtttt 45803411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 138 - 175
Target Start/End: Original strand, 13522422 - 13522459
Alignment:
Q  138 gaagttagggttttgaaaagaagttagggttttgaatt 175  Q
    |||||||| |||||||||||||||||||||||||||||    
T  13522422 gaagttagagttttgaaaagaagttagggttttgaatt 13522459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 43 - 110
Target Start/End: Original strand, 54875473 - 54875542
Alignment:
Q  43 ttaaggtaagggtcggactagc-ttctctaataatgggtt-tataattctgaaatagggtttaacatgtt 110  Q
    ||||||||||||| |||||||| ||||||||||||||||| ||| ||||| |||  ||||||||||||||    
T  54875473 ttaaggtaagggtgggactagctttctctaataatgggttgtatgattctaaaaaggggtttaacatgtt 54875542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 122
Target Start/End: Original strand, 12917306 - 12917386
Alignment:
Q  44 taaggtaagggtcggactagctt-ctctaataatgggtt-tataattctgaaatagggtttaacatgtttgttgttatttt 122  Q
    |||| ||||||| |||||| ||| ||||||||||||||| ||| ||||| ||| ||||||||||||| |||||||| ||||    
T  12917306 taagataagggtgggactaactttctctaataatgggttgtatgattctaaaaaagggtttaacatggttgttgttgtttt 12917386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 78 - 117
Target Start/End: Complemental strand, 13520409 - 13520370
Alignment:
Q  78 ggtttataattctgaaatagggtttaacatgtttgttgtt 117  Q
    |||||||||||||| |||||||||||||||| ||||||||    
T  13520409 ggtttataattctggaatagggtttaacatggttgttgtt 13520370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 44 - 105
Target Start/End: Original strand, 14152399 - 14152462
Alignment:
Q  44 taaggtaagggtcggactagc-ttctctaataatgggtt-tataattctgaaatagggtttaac 105  Q
    |||||||||||| |||||||| ||||||||||||| ||| ||| ||||||||| ||||||||||    
T  14152399 taaggtaagggtgggactagctttctctaataatgagttgtatcattctgaaaaagggtttaac 14152462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 44 - 105
Target Start/End: Original strand, 14641548 - 14641611
Alignment:
Q  44 taaggtaagggtcggactagctt-ctctaataatgggtt-tataattctgaaatagggtttaac 105  Q
    |||||||||||| ||| |||||| ||||||||||||||| ||||||||| ||| ||||||||||    
T  14641548 taaggtaagggtgggattagctttctctaataatgggttgtataattctaaaaaagggtttaac 14641611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 44 - 105
Target Start/End: Complemental strand, 17208576 - 17208513
Alignment:
Q  44 taaggtaagggtcggactagc-ttctctaataatgggtt-tataattctgaaatagggtttaac 105  Q
    |||||||||||| |||||||| ||||||||||||| ||| ||||||||||||| ||| ||||||    
T  17208576 taaggtaagggtgggactagctttctctaataatgagttgtataattctgaaaaaggatttaac 17208513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 44 - 105
Target Start/End: Complemental strand, 29907691 - 29907628
Alignment:
Q  44 taaggtaagggtcggactagctt-ctctaataatgggtt-tataattctgaaatagggtttaac 105  Q
    |||||||||||| |||||||||| || ||||| |||||| ||||||||||||| ||||||||||    
T  29907691 taaggtaagggtgggactagctttctttaatattgggttgtataattctgaaaaagggtttaac 29907628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 44 - 105
Target Start/End: Complemental strand, 29948857 - 29948794
Alignment:
Q  44 taaggtaagggtcggactagctt-ctctaataatgggtt-tataattctgaaatagggtttaac 105  Q
    |||||||||||| |||||||||| || ||||| |||||| ||||||||||||| ||||||||||    
T  29948857 taaggtaagggtgggactagctttctttaatattgggttgtataattctgaaaaagggtttaac 29948794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 44 - 105
Target Start/End: Complemental strand, 29998011 - 29997948
Alignment:
Q  44 taaggtaagggtcggactagctt-ctctaataatgggtt-tataattctgaaatagggtttaac 105  Q
    |||||||||||| |||||||||| || ||||| |||||| ||||||||||||| ||||||||||    
T  29998011 taaggtaagggtgggactagctttctttaatattgggttgtataattctgaaaaagggtttaac 29997948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 342 - 385
Target Start/End: Complemental strand, 17393475 - 17393430
Alignment:
Q  342 ttgggtatgaattat--gttgagttgtagttgttgattgtgatgat 385  Q
    |||||||||||||||  |||||||||| ||||||||||||||||||    
T  17393475 ttgggtatgaattataagttgagttgttgttgttgattgtgatgat 17393430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 342 - 375
Target Start/End: Original strand, 14177263 - 14177296
Alignment:
Q  342 ttgggtatgaattatgttgagttgtagttgttga 375  Q
    ||||||||||||||||||||||||| ||||||||    
T  14177263 ttgggtatgaattatgttgagttgttgttgttga 14177296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 251
Target Start/End: Complemental strand, 17393615 - 17393553
Alignment:
Q  187 gatgaaattgcatgctcttggtatatatatatttggatacttgatgaattatgctcaaatgatga 251  Q
    |||||||||||||| || || | |||||||||  |||||||||||||||||||| | ||||||||    
T  17393615 gatgaaattgcatgttcatgctgtatatatat--ggatacttgatgaattatgcacgaatgatga 17393553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 44 - 110
Target Start/End: Original strand, 3527157 - 3527225
Alignment:
Q  44 taaggtaagggtcggactagc-ttctctaataatgggtt-tataattctgaaatagggtttaacatgtt 110  Q
    |||||||||||| |||||||| ||||||||||||||||| ||| ||| | |||  ||||||||||||||    
T  3527157 taaggtaagggtgggactagctttctctaataatgggttgtatgattttaaaaaggggtttaacatgtt 3527225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 44 - 110
Target Start/End: Complemental strand, 6156762 - 6156695
Alignment:
Q  44 taaggtaagggtcggactagc-ttctctaataatgggtt-tataattctgaaatagggtttaacatgtt 110  Q
    |||||||||||| |||||||| ||||||||||||||||| ||| ||||| |||  ||||||||||||||    
T  6156762 taaggtaagggtgggactagctttctctaataatgggttgtatgattct-aaaaggggtttaacatgtt 6156695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 2e-31; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 44 - 145
Target Start/End: Original strand, 36734451 - 36734552
Alignment:
Q  44 taaggtaagggtcggactagcttctctaataatgggtttataattctgaaatagggtttaacatgtttgttgttattttattttgatgattagagaagtt 143  Q
    |||||||||||| ||| || ||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||| |||||||||||||||||| ||    
T  36734451 taaggtaagggtgggattaacttctctaataatgggtttataattctaaaatagggtttaacatggttgttgttgtttgattttgatgattagagaaatt 36734550  T
Q  144 ag 145  Q
    ||    
T  36734551 ag 36734552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 137 - 193
Target Start/End: Original strand, 1383724 - 1383780
Alignment:
Q  137 agaagttagggttttgaaaagaagttagggttttgaattgcaatttaattgatgaaa 193  Q
    ||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||    
T  1383724 agaagttagagttttgaaaagaagttagggttttgaattgcaatttgattgttgaaa 1383780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 137 - 182
Target Start/End: Complemental strand, 22501840 - 22501795
Alignment:
Q  137 agaagttagggttttgaaaagaagttagggttttgaattgcaattt 182  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||    
T  22501840 agaagttagagttttgaaaagaagttagggttttgaattgcaattt 22501795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 137 - 182
Target Start/End: Complemental strand, 22509774 - 22509729
Alignment:
Q  137 agaagttagggttttgaaaagaagttagggttttgaattgcaattt 182  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||    
T  22509774 agaagttagagttttgaaaagaagttagggttttgaattgcaattt 22509729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 137 - 193
Target Start/End: Complemental strand, 24884341 - 24884285
Alignment:
Q  137 agaagttagggttttgaaaagaagttagggttttgaattgcaatttaattgatgaaa 193  Q
    |||||||||  ||||||||||||||||||||||||||||||||||| |||| |||||    
T  24884341 agaagttagaattttgaaaagaagttagggttttgaattgcaatttgattgttgaaa 24884285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 44 - 122
Target Start/End: Original strand, 34491240 - 34491320
Alignment:
Q  44 taaggtaagggtcggactagcttctctaa-taatgggtt-tataattctgaaatagggtttaacatgtttgttgttatttt 122  Q
    |||||||||||| |||||||||||||||| ||| | ||| ||||||||||||| ||||||||||||| |||||||| ||||    
T  34491240 taaggtaagggtgggactagcttctctaaataacgagttgtataattctgaaaaagggtttaacatggttgttgttgtttt 34491320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 44 - 105
Target Start/End: Original strand, 21315476 - 21315539
Alignment:
Q  44 taaggtaagggtcggactagctt-ctctaataatgggtt-tataattctgaaatagggtttaac 105  Q
    |||||||||||| |||||||||| ||||||||||||||| ||||||||||||| ||||||||||    
T  21315476 taaggtaagggtgggactagctttctctaataatgggttgtataattctgaaaaagggtttaac 21315539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 44 - 105
Target Start/End: Original strand, 21335266 - 21335329
Alignment:
Q  44 taaggtaagggtcggactagctt-ctctaataatgggtt-tataattctgaaatagggtttaac 105  Q
    |||||||||||| |||||||||| ||||||||||||||| ||||||||||||| ||||||||||    
T  21335266 taaggtaagggtgggactagctttctctaataatgggttgtataattctgaaaaagggtttaac 21335329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 6 - 55
Target Start/End: Complemental strand, 23149690 - 23149642
Alignment:
Q  6 aggagcagagagattgtagaacgttgttcgtatgaatttaaggtaagggt 55  Q
    |||| |||||||||||||||||||||||||| |||| |||||||||||||    
T  23149690 aggaccagagagattgtagaacgttgttcgtctgaa-ttaaggtaagggt 23149642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 6 - 55
Target Start/End: Complemental strand, 23561480 - 23561432
Alignment:
Q  6 aggagcagagagattgtagaacgttgttcgtatgaatttaaggtaagggt 55  Q
    |||| |||||||||||||||||||||||||| |||| |||||||||||||    
T  23561480 aggaccagagagattgtagaacgttgttcgtctgaa-ttaaggtaagggt 23561432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 124 - 173
Target Start/End: Original strand, 25584343 - 25584391
Alignment:
Q  124 ttttgatgattagagaagttagggttttgaaaagaagttagggttttgaa 173  Q
    |||||||| ||| |||||||||||||||||||||||||||||||| ||||    
T  25584343 ttttgatg-ttatagaagttagggttttgaaaagaagttagggttgtgaa 25584391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 110
Target Start/End: Complemental strand, 23801548 - 23801480
Alignment:
Q  44 taaggtaagggtcggactagc-ttctctaataatgggtt-tataattctgaaatagggtttaacatgtt 110  Q
    |||||||||||| |||||||| ||||||||||||||||| ||| ||||| |||  ||||||||||||||    
T  23801548 taaggtaagggtgggactagctttctctaataatgggttgtatgattctaaaaaggggtttaacatgtt 23801480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 44 - 105
Target Start/End: Complemental strand, 21369345 - 21369282
Alignment:
Q  44 taaggtaagggtcggactagctt-ctctaataatgggtt-tataattctgaaatagggtttaac 105  Q
    |||||||||||| |||| ||||| |||||| |||||||| ||||||||||||| ||||||||||    
T  21369345 taaggtaagggtgggacaagctttctctaacaatgggttgtataattctgaaaaagggtttaac 21369282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 44 - 105
Target Start/End: Complemental strand, 23610678 - 23610615
Alignment:
Q  44 taaggtaagggtcggactagc-ttctctaataatgggtt-tataattctgaaatagggtttaac 105  Q
    |||||||||||| |||||||| ||||||||||||||||| ||||||| ||||| | ||||||||    
T  23610678 taaggtaagggtgggactagctttctctaataatgggttgtataattatgaaaaatggtttaac 23610615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 137 - 182
Target Start/End: Original strand, 25584374 - 25584420
Alignment:
Q  137 agaagttagggttttgaaaagaagtta-gggttttgaattgcaattt 182  Q
    ||||||||||||| ||||||||||||| |||||||||||| ||||||    
T  25584374 agaagttagggttgtgaaaagaagttaggggttttgaattacaattt 25584420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 104
Target Start/End: Original strand, 20005971 - 20006032
Alignment:
Q  44 taaggtaagggtcggactagc-ttctctaataatgggtttataattctgaaatagggtttaa 104  Q
    |||||||||||| |||||||| |||| |||| ||| || ||||||||||||| |||||||||    
T  20005971 taaggtaagggtgggactagccttctttaatcatgagtctataattctgaaaaagggtttaa 20006032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 173
Target Start/End: Complemental strand, 357752 - 357716
Alignment:
Q  137 agaagttagggttttgaaaagaagttagggttttgaa 173  Q
    ||||||||| |||||||||||||||||| ||||||||    
T  357752 agaagttagagttttgaaaagaagttagagttttgaa 357716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 156 - 192
Target Start/End: Original strand, 18388328 - 18388364
Alignment:
Q  156 agaagttagggttttgaattgcaatttaattgatgaa 192  Q
    ||||||||||||||||||||||||||| |||| ||||    
T  18388328 agaagttagggttttgaattgcaatttgattgttgaa 18388364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 67; Significance: 1e-29; HSPs: 3)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 48 - 146
Target Start/End: Original strand, 35490 - 35588
Alignment:
Q  48 gtaagggtcggactagcttctctaataatgggtttataattctgaaatagggtttaacatgtttgttgttattttattttgatgattagagaagttagg 146  Q
    |||||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||| |||||||| |||||    
T  35490 gtaagggtgggattagcttctctaatgatgggtttataattctgaaatagggtttaacatggttgttgttgtttgattttgatggttagagaaattagg 35588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 48 - 122
Target Start/End: Original strand, 35341 - 35415
Alignment:
Q  48 gtaagggtcggactagcttctctaataatgggtttataattctgaaatagggtttaacatgtttgttgttatttt 122  Q
    |||||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||||    
T  35341 gtaagggtgggattagcttctctaatgatgggtttataattctgaaatagggtttaacatggttgttgttgtttt 35415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 44 - 122
Target Start/End: Original strand, 35186 - 35266
Alignment:
Q  44 taaggtaagggtcggactagctt-ctctaataatgggtt-tataattctgaaatagggtttaacatgtttgttgttatttt 122  Q
    |||||||||||| | |||||||| | ||||||||||||| ||||||||| ||| ||||||||||||| |||||||| ||||    
T  35186 taaggtaagggtggtactagctttccctaataatgggttgtataattctaaaaaagggtttaacatggttgttgttgtttt 35266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 7e-22; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 44 - 105
Target Start/End: Original strand, 21676500 - 21676561
Alignment:
Q  44 taaggtaagggtcggactagcttctctaataatgggtttataattctgaaatagggtttaac 105  Q
    |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  21676500 taaggtaagggtgggactagcttctctaataatgggtttataattatgaaatagggtttaac 21676561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 44 - 105
Target Start/End: Original strand, 21676593 - 21676654
Alignment:
Q  44 taaggtaagggtcggactagcttctctaataatgggtttataattctgaaatagggtttaac 105  Q
    |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  21676593 taaggtaagggtgggactagcttctctaataatgggtttataattatgaaatagggtttaac 21676654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 44 - 105
Target Start/End: Original strand, 21678846 - 21678907
Alignment:
Q  44 taaggtaagggtcggactagcttctctaataatgggtttataattctgaaatagggtttaac 105  Q
    |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  21678846 taaggtaagggtgggactagcttctctaataatgggtttataattatgaaatagggtttaac 21678907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 44 - 173
Target Start/End: Complemental strand, 22345216 - 22345086
Alignment:
Q  44 taaggtaagggtcggactagctt-ctctaataatgggtt-tataattctgaaatagggtttaacatgtttgttgttatttta-ttttgatgattagagaa 140  Q
    |||||||||||| |||||||||| ||||||||||||||| ||| |||| ||||  |||||||||||||| |||||| | ||| |||||||  || |||||    
T  22345216 taaggtaagggtgggactagctttctctaataatgggttgtatgattccgaaaaggggtttaacatgtt-gttgttttgttaattttgattgtt-gagaa 22345119  T
Q  141 gttagggttttgaaaagaagttagggttttgaa 173  Q
    |||||||||||||||||||||||||||| ||||    
T  22345118 gttagggttttgaaaagaagttagggttgtgaa 22345086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 44 - 173
Target Start/End: Complemental strand, 22356876 - 22356746
Alignment:
Q  44 taaggtaagggtcggactagctt-ctctaataatgggtt-tataattctgaaatagggtttaacatgtttgttgttatttta-ttttgatgattagagaa 140  Q
    |||||||||||| |||||||||| ||||||||||||||| ||| |||| ||||  |||||||||||||| |||||| | ||| |||||||  || |||||    
T  22356876 taaggtaagggtgggactagctttctctaataatgggttgtatgattccgaaaaggggtttaacatgtt-gttgttttgttaattttgattgtt-gagaa 22356779  T
Q  141 gttagggttttgaaaagaagttagggttttgaa 173  Q
    |||||||||||||||||||||||||||| ||||    
T  22356778 gttagggttttgaaaagaagttagggttgtgaa 22356746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 48 - 122
Target Start/End: Complemental strand, 22483834 - 22483758
Alignment:
Q  48 gtaagggtcggactagctt-ctctaataatgggtt-tataattctgaaatagggtttaacatgtttgttgttatttt 122  Q
    |||||||| |||||||||| ||||||||||||||| ||||||||||||| ||||||||||||  |||||||||||||    
T  22483834 gtaagggtgggactagctttctctaataatgggttgtataattctgaaaaagggtttaacatcgttgttgttatttt 22483758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 137 - 193
Target Start/End: Original strand, 20517128 - 20517184
Alignment:
Q  137 agaagttagggttttgaaaagaagttagggttttgaattgcaatttaattgatgaaa 193  Q
    ||||||||||||| |||||||||||| ||||||||||||||||||| |||| |||||    
T  20517128 agaagttagggttgtgaaaagaagttggggttttgaattgcaatttgattgttgaaa 20517184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 137 - 193
Target Start/End: Complemental strand, 22345103 - 22345047
Alignment:
Q  137 agaagttagggttttgaaaagaagttagggttttgaattgcaatttaattgatgaaa 193  Q
    ||||||||||||| ||||||||||||| |||||||||||||||||| |||| |||||    
T  22345103 agaagttagggttgtgaaaagaagttatggttttgaattgcaatttgattgttgaaa 22345047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 137 - 193
Target Start/End: Complemental strand, 22356763 - 22356707
Alignment:
Q  137 agaagttagggttttgaaaagaagttagggttttgaattgcaatttaattgatgaaa 193  Q
    ||||||||||||| ||||||||||||| |||||||||||||||||| |||| |||||    
T  22356763 agaagttagggttgtgaaaagaagttatggttttgaattgcaatttgattgttgaaa 22356707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 44 - 105
Target Start/End: Complemental strand, 22208321 - 22208258
Alignment:
Q  44 taaggtaagggtcggactagctt-ctctaataatgggtt-tataattctgaaatagggtttaac 105  Q
    |||||||||||| |||||||||| ||||||||||||||| ||||||||||||| ||||||||||    
T  22208321 taaggtaagggtgggactagctttctctaataatgggttgtataattctgaaaaagggtttaac 22208258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 6 - 55
Target Start/End: Complemental strand, 19989998 - 19989949
Alignment:
Q  6 aggagcagagagattgtagaacgttgttcgtatgaatttaaggtaagggt 55  Q
    |||| |||| ||||||||||||||||||||| ||||||||||||||||||    
T  19989998 aggaccagaaagattgtagaacgttgttcgtctgaatttaaggtaagggt 19989949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 138 - 182
Target Start/End: Complemental strand, 36305821 - 36305777
Alignment:
Q  138 gaagttagggttttgaaaagaagttagggttttgaattgcaattt 182  Q
    ||||||| | |||||||||||||||||||||||||||||||||||    
T  36305821 gaagttatgattttgaaaagaagttagggttttgaattgcaattt 36305777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 44 - 105
Target Start/End: Original strand, 18816295 - 18816358
Alignment:
Q  44 taaggtaagggtcggactagctt-ctctaataatgggtt-tataattctgaaatagggtttaac 105  Q
    |||||||||||| |||||||||| |||||| |||||||| ||||||||||||| ||||||||||    
T  18816295 taaggtaagggtgggactagctttctctaaaaatgggttgtataattctgaaaaagggtttaac 18816358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 65 - 125
Target Start/End: Complemental strand, 22483968 - 22483907
Alignment:
Q  65 ttctctaataatgggtt-tataattctgaaatagggtttaacatgtttgttgttattttatt 125  Q
    ||||||||||||| ||| ||||||||| ||| ||||||||||||| |||||||| |||||||    
T  22483968 ttctctaataatgagttgtataattcttaaaaagggtttaacatggttgttgttgttttatt 22483907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 110
Target Start/End: Complemental strand, 21399769 - 21399701
Alignment:
Q  44 taaggtaagggtcggactagc-ttctctaataatgggtt-tataattctgaaatagggtttaacatgtt 110  Q
    |||||||||||| |||||||| ||||||||||||||||| ||| ||||| |||  ||||||||||||||    
T  21399769 taaggtaagggtgggactagctttctctaataatgggttgtatgattctaaaaaggggtttaacatgtt 21399701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 110
Target Start/End: Complemental strand, 21794262 - 21794194
Alignment:
Q  44 taaggtaagggtcggactagc-ttctctaataatgggtt-tataattctgaaatagggtttaacatgtt 110  Q
    |||||||||||| |||||||| ||||||||||||||||| ||| ||||| |||  ||||||||||||||    
T  21794262 taaggtaagggtgggactagctttctctaataatgggttgtatgattctaaaaaggggtttaacatgtt 21794194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 44 - 105
Target Start/End: Original strand, 36732412 - 36732475
Alignment:
Q  44 taaggtaagggtcggactagctt-ctctaataatgggtt-tataattctgaaatagggtttaac 105  Q
    ||||||||||||  ||||||||| ||||||||||||||| ||||||||||||| || |||||||    
T  36732412 taaggtaagggtgtgactagctttctctaataatgggttgtataattctgaaaaagagtttaac 36732475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 342 - 375
Target Start/End: Complemental strand, 23217905 - 23217872
Alignment:
Q  342 ttgggtatgaattatgttgagttgtagttgttga 375  Q
    ||||||||||||||||||||||||| ||||||||    
T  23217905 ttgggtatgaattatgttgagttgttgttgttga 23217872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 110
Target Start/End: Complemental strand, 18834478 - 18834407
Alignment:
Q  40 aatttaaggtaagggtcggactagc-ttctctaataatgggtt-tataattctgaaatagggtttaacatgtt 110  Q
    |||||||||||||||| |||||||| |||||||||||||| || ||| ||||| |||  ||||||||||||||    
T  18834478 aatttaaggtaagggtgggactagctttctctaataatggattgtatgattct-aaaaggggtttaacatgtt 18834407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 105
Target Start/End: Complemental strand, 21514744 - 21514680
Alignment:
Q  43 ttaaggtaagggtcggactag-cttctctaataatgggtt-tataattctgaaatagggtttaac 105  Q
    ||||||||||||| |||||||  ||||||||||||| ||| ||||||||| ||| ||||||||||    
T  21514744 ttaaggtaagggtgggactagatttctctaataatgagttgtataattcttaaaaagggtttaac 21514680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 122
Target Start/End: Original strand, 36732513 - 36732557
Alignment:
Q  78 ggtttataattctgaaatagggtttaacatgtttgttgttatttt 122  Q
    ||||||||||||| ||| ||||||||||||| |||||||| ||||    
T  36732513 ggtttataattctaaaaaagggtttaacatggttgttgttgtttt 36732557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 156 - 192
Target Start/End: Original strand, 42265647 - 42265683
Alignment:
Q  156 agaagttagggttttgaattgcaatttaattgatgaa 192  Q
    ||||||||||||||||||||||||||| |||| ||||    
T  42265647 agaagttagggttttgaattgcaatttgattgttgaa 42265683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 78 - 150
Target Start/End: Complemental strand, 35660907 - 35660835
Alignment:
Q  78 ggtttataattctgaaatagggtttaacatgtttgttgttattttattttgatgattagagaagttagggttt 150  Q
    |||||||||||||| |||||||||||||||| |||||||| ||| |||||||||||||||||| |||||||||    
T  35660907 ggtttataattctggaatagggtttaacatggttgttgttgtttgattttgatgattagagaaattagggttt 35660835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 40 - 94
Target Start/End: Original strand, 12424286 - 12424342
Alignment:
Q  40 aatttaaggtaagggtcggactagc-ttctctaataatgggtt-tataattctgaaa 94  Q
    |||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||    
T  12424286 aatttaaggtaagggtgggactagctttctctaataatgggttgtataattctgaaa 12424342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 44 - 105
Target Start/End: Complemental strand, 14631187 - 14631124
Alignment:
Q  44 taaggtaagggtcggactagctt-ctctaataatgggtt-tataattctgaaatagggtttaac 105  Q
    ||||||||||||  ||||||||| ||||||||||||||| ||||||||||||| ||||||||||    
T  14631187 taaggtaagggtgagactagctttctctaataatgggttgtataattctgaaaaagggtttaac 14631124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 44 - 105
Target Start/End: Complemental strand, 16296990 - 16296927
Alignment:
Q  44 taaggtaagggtcggactagctt-ctctaataatgggtt-tataattctgaaatagggtttaac 105  Q
    |||||||||||| |||||||||| ||||||||||| ||| ||||||||||||| ||||||||||    
T  16296990 taaggtaagggtgggactagctttctctaataatgagttgtataattctgaaaaagggtttaac 16296927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 40 - 105
Target Start/End: Complemental strand, 33186959 - 33186892
Alignment:
Q  40 aatttaaggtaagggtcggactagctt-ctctaataatgggtt-tataattctgaaatagggtttaac 105  Q
    ||||||||||| ||||  ||||||||| ||||||||||||||| ||||||||||||| ||||||||||    
T  33186959 aatttaaggtaggggtgagactagctttctctaataatgggttgtataattctgaaaaagggtttaac 33186892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 332 - 373
Target Start/End: Original strand, 16225376 - 16225417
Alignment:
Q  332 atatcttgaattgggtatgaattatgttgagttgtagttgtt 373  Q
    ||||| ||||||||||||||||||||||||||||| ||||||    
T  16225376 atatcatgaattgggtatgaattatgttgagttgttgttgtt 16225417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 137 - 193
Target Start/End: Original strand, 19434730 - 19434787
Alignment:
Q  137 agaagttagggttttgaaaagaagttaggg-ttttgaattgcaatttaattgatgaaa 193  Q
    ||||||||| ||||| |||||||||||||| |||||||||||||||| |||| |||||    
T  19434730 agaagttagagttttaaaaagaagttagggtttttgaattgcaatttgattgttgaaa 19434787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 44 - 107
Target Start/End: Complemental strand, 25513903 - 25513838
Alignment:
Q  44 taaggtaagggtcggactagctt-ctctaataatgggtt-tataattctgaaatagggtttaacat 107  Q
    |||||||| ||| |||||||||| ||||||||||| ||| ||||||||||||| ||||||||||||    
T  25513903 taaggtaatggtgggactagctttctctaataatgagttgtataattctgaaaaagggtttaacat 25513838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 137 - 182
Target Start/End: Original strand, 45314210 - 45314254
Alignment:
Q  137 agaagttagggttttgaaaagaagttagggttttgaattgcaattt 182  Q
    |||||||||||||||||||||||||| ||| |||||||||||||||    
T  45314210 agaagttagggttttgaaaagaagtttggg-tttgaattgcaattt 45314254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 44 - 105
Target Start/End: Complemental strand, 9639062 - 9638999
Alignment:
Q  44 taaggtaagggtcggactagc-ttctctaataatgggtt-tataattctgaaatagggtttaac 105  Q
    |||||||||||| |||||||| ||||||||||||| ||| | ||||||||||| ||||||||||    
T  9639062 taaggtaagggtgggactagctttctctaataatgagttgtgtaattctgaaaaagggtttaac 9638999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 338 - 384
Target Start/End: Complemental strand, 19559395 - 19559348
Alignment:
Q  338 tgaattgggtatgaattatgttgagttgtagttgttg-attgtgatga 384  Q
    |||||| |||||||||||||||||||||| ||||||| ||||||||||    
T  19559395 tgaattaggtatgaattatgttgagttgttgttgttgaattgtgatga 19559348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 48 - 104
Target Start/End: Complemental strand, 26446255 - 26446197
Alignment:
Q  48 gtaagggtcggactagctt-ctctaataatgggtt-tataattctgaaatagggtttaa 104  Q
    |||||||| |||||||||| ||||||||||||||| ||||||||||||| | |||||||    
T  26446255 gtaagggtaggactagctttctctaataatgggttgtataattctgaaaaatggtttaa 26446197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 44 - 110
Target Start/End: Complemental strand, 9622541 - 9622473
Alignment:
Q  44 taaggtaagggtcggactagc-ttctctaataatgggtt-tataattctgaaatagggtttaacatgtt 110  Q
    |||||||||||| |||||||| ||||||||||||||||| | | ||||| |||  ||||||||||||||    
T  9622541 taaggtaagggtgggactagctttctctaataatgggttgtctgattctaaaaaggggtttaacatgtt 9622473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 44 - 110
Target Start/End: Complemental strand, 10273435 - 10273367
Alignment:
Q  44 taaggtaagggtcggactagc-ttctctaataatgggtt-tataattctgaaatagggtttaacatgtt 110  Q
    |||||||||||| |||||||| ||||||||||||||||| ||| ||||| |||  |||| |||||||||    
T  10273435 taaggtaagggtgggactagctttctctaataatgggttgtatgattctaaaaaggggtataacatgtt 10273367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 154 - 182
Target Start/End: Original strand, 14353888 - 14353916
Alignment:
Q  154 aaagaagttagggttttgaattgcaattt 182  Q
    |||||||||||||||||||||||||||||    
T  14353888 aaagaagttagggttttgaattgcaattt 14353916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 44 - 110
Target Start/End: Complemental strand, 55583248 - 55583180
Alignment:
Q  44 taaggtaagggtcggactagc-ttctctaataatgggtt-tataattctgaaatagggtttaacatgtt 110  Q
    |||||||||||| |||||||| ||||||||||||||||| ||| ||| | |||  ||||||||||||||    
T  55583248 taaggtaagggtgggactagctttctctaataatgggttgtatgattataaaaaggggtttaacatgtt 55583180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 79 - 150
Target Start/End: Original strand, 34140556 - 34140627
Alignment:
Q  79 gtttataattctgaaatagggtttaacatgtttgttgttattttattttgatgattagagaagttagggttt 150  Q
    ||||||||||||| |||||||||||||||| |||||||| ||| |||||||||||||||||| |||||||||    
T  34140556 gtttataattctggaatagggtttaacatggttgttgttgtttgattttgatgattagagaaattagggttt 34140627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 79 - 150
Target Start/End: Original strand, 34153172 - 34153243
Alignment:
Q  79 gtttataattctgaaatagggtttaacatgtttgttgttattttattttgatgattagagaagttagggttt 150  Q
    ||||||||||||| |||||||||||||||| |||||||| ||| |||||||||||||||||| |||||||||    
T  34153172 gtttataattctggaatagggtttaacatggttgttgttgtttgattttgatgattagagaaattagggttt 34153243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 44 - 104
Target Start/End: Original strand, 34140456 - 34140516
Alignment:
Q  44 taaggtaagggtcggactagcttctctaataatgggtttataattctgaaatagggtttaa 104  Q
    |||||||||||| |||||||||||||||||||||||||||||||| ||||||  |||||||    
T  34140456 taaggtaagggtgggactagcttctctaataatgggtttataattttgaaatctggtttaa 34140516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 44 - 95
Target Start/End: Original strand, 34153072 - 34153123
Alignment:
Q  44 taaggtaagggtcggactagcttctctaataatgggtttataattctgaaat 95  Q
    |||||||||||| |||||||||||||||||||||||||||||||| ||||||    
T  34153072 taaggtaagggtgggactagcttctctaataatgggtttataattttgaaat 34153123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 137 - 193
Target Start/End: Complemental strand, 18585659 - 18585603
Alignment:
Q  137 agaagttagggttttgaaaagaagttagggttttgaattgcaatttaattgatgaaa 193  Q
    ||||||||| ||||||||||||||||||| |||||||||||||||| |||| |||||    
T  18585659 agaagttagagttttgaaaagaagttaggattttgaattgcaatttgattgttgaaa 18585603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 186 - 251
Target Start/End: Original strand, 17374992 - 17375055
Alignment:
Q  186 tgatgaaattgcatgctcttggtatatatatatttggatacttgatgaattatgctcaaatgatga 251  Q
    |||||||||| |||| || |||| |||||||||  |||||||||||||||||||||||||||||||    
T  17374992 tgatgaaattacatgttcatggtgtatatatat--ggatacttgatgaattatgctcaaatgatga 17375055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 44 - 122
Target Start/End: Complemental strand, 29045323 - 29045243
Alignment:
Q  44 taaggtaagggtcggactagctt-ctctaataatgggtt-tataattctgaaatagggtttaacatgtttgttgttatttt 122  Q
    ||||||||||||  ||||||||| ||||||||||||||| ||||||| ||||| ||||||||||||| || ||||| ||||    
T  29045323 taaggtaagggtgagactagctttctctaataatgggttgtataattttgaaaaagggtttaacatggttattgttgtttt 29045243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 44 - 105
Target Start/End: Original strand, 21683075 - 21683138
Alignment:
Q  44 taaggtaagggtcggactagc-ttctctaataatgggtt-tataattctgaaatagggtttaac 105  Q
    |||||||||||| |||||||| ||||||||||||||||| |||||||| |||| ||||||||||    
T  21683075 taaggtaagggtgggactagctttctctaataatgggttgtataattcagaaaaagggtttaac 21683138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 110
Target Start/End: Complemental strand, 10446269 - 10446201
Alignment:
Q  44 taaggtaagggtcggactagc-ttctctaataatgggtt-tataattctgaaatagggtttaacatgtt 110  Q
    |||||||||||| |||||||| ||||||||||||||||| ||| ||||| |||  ||||||||||||||    
T  10446269 taaggtaagggtgggactagctttctctaataatgggttgtatgattctaaaaaggggtttaacatgtt 10446201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 40 - 105
Target Start/End: Original strand, 20410508 - 20410575
Alignment:
Q  40 aatttaaggtaagggtcggactagctt-ctctaataatgggtt-tataattctgaaatagggtttaac 105  Q
    |||||||||||||||| | | |||||| ||||||||||||||| ||||||||||||| ||| ||||||    
T  20410508 aatttaaggtaagggtggaaatagctttctctaataatgggttgtataattctgaaaaaggatttaac 20410575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 44 - 105
Target Start/End: Complemental strand, 23658141 - 23658078
Alignment:
Q  44 taaggtaagggtcggactagctt-ctctaataatgggtt-tataattctgaaatagggtttaac 105  Q
    |||||||||||| |||||||||| | |||||||| |||| ||||||||||||| ||||||||||    
T  23658141 taaggtaagggtgggactagctttccctaataataggttgtataattctgaaaaagggtttaac 23658078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 342 - 375
Target Start/End: Original strand, 15889933 - 15889966
Alignment:
Q  342 ttgggtatgaattatgttgagttgtagttgttga 375  Q
    ||||||||||||||||||||||||| ||||||||    
T  15889933 ttgggtatgaattatgttgagttgttgttgttga 15889966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 342 - 375
Target Start/End: Original strand, 22585773 - 22585806
Alignment:
Q  342 ttgggtatgaattatgttgagttgtagttgttga 375  Q
    ||||||||||||||||||||||||| ||||||||    
T  22585773 ttgggtatgaattatgttgagttgttgttgttga 22585806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 342 - 375
Target Start/End: Original strand, 22590604 - 22590637
Alignment:
Q  342 ttgggtatgaattatgttgagttgtagttgttga 375  Q
    ||||||||||||||||||||||||| ||||||||    
T  22590604 ttgggtatgaattatgttgagttgttgttgttga 22590637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 137 - 193
Target Start/End: Complemental strand, 14274203 - 14274147
Alignment:
Q  137 agaagttagggttttgaaaagaagttagggttttgaattgcaatttaattgatgaaa 193  Q
    ||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||    
T  14274203 agaagttagagttttgaaaagaagttagggttttgaattgcaatttgattgttgaaa 14274147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 186 - 251
Target Start/End: Original strand, 15977914 - 15977977
Alignment:
Q  186 tgatgaaattgcatgctcttggtatatatatatttggatacttgatgaattatgctcaaatgatga 251  Q
    ||||||||||||||| || |||| |||||||||  |||||||||||||||||| ||||||||||||    
T  15977914 tgatgaaattgcatgttcatggtgtatatatat--ggatacttgatgaattatactcaaatgatga 15977977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 44 - 120
Target Start/End: Original strand, 20252182 - 20252260
Alignment:
Q  44 taaggtaagggtcggactagctt-ctctaataatgggtt-tataattctgaaatagggtttaacatgtttgttgttatt 120  Q
    |||||||||||| |||||||||| ||||||||||| ||| ||||||||||||| ||||||||||||  | |||||||||    
T  20252182 taaggtaagggtaggactagctttctctaataatgagttgtataattctgaaaaagggtttaacattgtagttgttatt 20252260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 44 - 104
Target Start/End: Complemental strand, 38299800 - 38299738
Alignment:
Q  44 taaggtaagggtcggactagctt-ctctaataatgggtt-tataattctgaaatagggtttaa 104  Q
    |||||||||||| |||||||||| ||||||||||||||| ||||||||||||| |||||||||    
T  38299800 taaggtaagggtgggactagctttctctaataatgggttgtataattctgaaaaagggtttaa 38299738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 44 - 105
Target Start/End: Original strand, 708429 - 708492
Alignment:
Q  44 taaggtaagggtcggactagctt-ctctaataatgggtt-tataattctgaaatagggtttaac 105  Q
    ||||||| |||| |||||||||| ||||||||||||||| ||||||||||||| ||||||||||    
T  708429 taaggtaggggtgggactagctttctctaataatgggttgtataattctgaaaaagggtttaac 708492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 44 - 105
Target Start/End: Original strand, 15575649 - 15575712
Alignment:
Q  44 taaggtaagggtcggactagctt-ctctaataatgggtt-tataattctgaaatagggtttaac 105  Q
    ||||||| |||| |||||||||| ||||||||||||||| ||||||||||||| ||||||||||    
T  15575649 taaggtaggggtgggactagctttctctaataatgggttgtataattctgaaaaagggtttaac 15575712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 137 - 193
Target Start/End: Original strand, 708592 - 708649
Alignment:
Q  137 agaagttagggttttgaaaagaagttaggg-ttttgaattgcaatttaattgatgaaa 193  Q
    ||||||||| |||||||||||||||||||| |||| ||||||||||| |||| |||||    
T  708592 agaagttagagttttgaaaagaagttagggtttttaaattgcaatttgattgttgaaa 708649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 44 - 122
Target Start/End: Original strand, 13744510 - 13744591
Alignment:
Q  44 taaggtaagggtcggactagc-ttctctaataatggg-tttataattctgaaatagggtttaacatgtt-tgttgttatttt 122  Q
    |||||||||||| |||||||| ||||||||||||||| ||||| ||||| |||  |||||||||||||| | ||||||||||    
T  13744510 taaggtaagggtgggactagctttctctaataatgggttttatgattctaaaaaggggtttaacatgttgttttgttatttt 13744591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 110
Target Start/End: Original strand, 58413 - 58481
Alignment:
Q  44 taaggtaagggtcggactagc-ttctctaataatgggtt-tataattctgaaatagggtttaacatgtt 110  Q
    |||||||||||| |||||||| ||||||||||||||||| ||| ||||| |||  ||||||||||||||    
T  58413 taaggtaagggtgggactagctttctctaataatgggttgtatgattctaaaaaggggtttaacatgtt 58481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 94
Target Start/End: Original strand, 43276740 - 43276796
Alignment:
Q  40 aatttaaggtaagggtcggactagc-ttctctaataatgggtt-tataattctgaaa 94  Q
    |||||||||||||||| |||||| | ||||||||||||||||| |||||||||||||    
T  43276740 aatttaaggtaagggtgggactaactttctctaataatgggttgtataattctgaaa 43276796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 44 - 105
Target Start/End: Original strand, 8488094 - 8488157
Alignment:
Q  44 taaggtaagggtcggactagctt-ctctaataatgggtt-tataattctgaaatagggtttaac 105  Q
    |||||||||||| |||||| ||| ||||||||||||||| ||||||||| ||| ||||||||||    
T  8488094 taaggtaagggtgggactaactttctctaataatgggttgtataattctaaaaaagggtttaac 8488157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 44 - 105
Target Start/End: Original strand, 8513753 - 8513816
Alignment:
Q  44 taaggtaagggtcggactagctt-ctctaataatgggtt-tataattctgaaatagggtttaac 105  Q
    |||||||||||| |||||| ||| ||||||||||||||| ||||||||| ||| ||||||||||    
T  8513753 taaggtaagggtgggactaactttctctaataatgggttgtataattctaaaaaagggtttaac 8513816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 44 - 105
Target Start/End: Complemental strand, 19195663 - 19195601
Alignment:
Q  44 taaggtaagggtcggactagc-ttctctaataatgggtt-tataattctgaaatagggtttaac 105  Q
    |||||||||||| |||||||| ||||||||||||| ||| ||||||||||||| ||||||||||    
T  19195663 taaggtaagggtgggactagctttctctaataatgagttgtataattctgaaa-agggtttaac 19195601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 40 - 122
Target Start/End: Complemental strand, 19283112 - 19283026
Alignment:
Q  40 aatttaaggtaagggtcggactagctt-ctctaataatgggtt-tataattctgaaataggg--tttaacatgtttgttgttatttt 122  Q
    ||||||||||||||||  ||||| ||| |||||| |||||||| ||||||||||||| ||||  ||||||||| |||||||| ||||    
T  19283112 aatttaaggtaagggtgagactaactttctctaagaatgggttgtataattctgaaaaagggggtttaacatggttgttgttgtttt 19283026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 44 - 149
Target Start/End: Original strand, 33556105 - 33556210
Alignment:
Q  44 taaggtaagggtcggactagctt-ctctaataatgggtt-tataattctgaaatagggtttaacatgtttgttgttattttattttgatgattagagaag 141  Q
    |||| ||||||| |||||||||| ||||||||||||||| ||| ||||| |||  |||||||||||| |||||||| | ||| ||||||| ||| ||||     
T  33556105 taagataagggtgggactagctttctctaataatgggttgtatgattctaaaaaggggtttaacatg-ttgttgttttgttagtttgatg-ttatagaaa 33556202  T
Q  142 ttagggtt 149  Q
    ||||||||    
T  33556203 ttagggtt 33556210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 44 - 105
Target Start/End: Complemental strand, 43745708 - 43745645
Alignment:
Q  44 taaggtaagggtcggactagc-ttctctaataatgggtt-tataattctgaaatagggtttaac 105  Q
    |||||||||||| |||||||| ||||||||||||| ||| ||||||| ||||| ||||||||||    
T  43745708 taaggtaagggtgggactagctttctctaataatgagttgtataattatgaaaaagggtttaac 43745645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 44 - 105
Target Start/End: Complemental strand, 47095504 - 47095441
Alignment:
Q  44 taaggtaagggtcggactagc-ttctctaataatgggtt-tataattctgaaatagggtttaac 105  Q
    |||||||||||| |||||||| |||||||||||||||||  |||||||||||| | ||||||||    
T  47095504 taaggtaagggtgggactagctttctctaataatgggttgaataattctgaaaaatggtttaac 47095441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 193
Target Start/End: Original strand, 12754736 - 12754793
Alignment:
Q  137 agaagttagggttttgaaaagaagttagggtttt-gaattgcaatttaattgatgaaa 193  Q
    ||||||||| ||||| |||||||||| ||||||| |||||||||||| |||| |||||    
T  12754736 agaagttagagttttaaaaagaagtttgggtttttgaattgcaatttgattgttgaaa 12754793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 107
Target Start/End: Original strand, 16250222 - 16250287
Alignment:
Q  44 taaggtaagggtcggactagctt-ctctaataatgggtt-tataattctgaaatagggtttaacat 107  Q
    |||||||||||| |||||| ||| ||||||||||| ||| ||||||| ||||| ||||||||||||    
T  16250222 taaggtaagggtgggactaactttctctaataatgagttgtataattttgaaaaagggtttaacat 16250287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 44 - 110
Target Start/End: Original strand, 13315082 - 13315150
Alignment:
Q  44 taaggtaagggtcggactagctt-ctctaataatgggtt-tataattctgaaatagggtttaacatgtt 110  Q
    ||||||||||||  ||||| ||| ||||||||||||||| ||| |||||||||  ||||||||||||||    
T  13315082 taaggtaagggtgagactatctttctctaataatgggttgtatgattctgaaaaggggtttaacatgtt 13315150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 110
Target Start/End: Complemental strand, 15720835 - 15720763
Alignment:
Q  40 aatttaaggtaagggtcggactagc-ttctctaataatgggtt-tataattctgaaatagggtttaacatgtt 110  Q
    |||||||||||| ||| |||||||| |||||| |||||||||| ||| ||||| |||  ||||||||||||||    
T  15720835 aatttaaggtaaaggtgggactagctttctctcataatgggttgtatgattctaaaaaggggtttaacatgtt 15720763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 44 - 94
Target Start/End: Original strand, 18874665 - 18874717
Alignment:
Q  44 taaggtaagggtcggactagctt-ctctaataatgggtt-tataattctgaaa 94  Q
    ||||||||||||  ||||||||| ||||||||||||||| |||||||||||||    
T  18874665 taaggtaagggtgagactagctttctctaataatgggttgtataattctgaaa 18874717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 157 - 193
Target Start/End: Original strand, 47974983 - 47975019
Alignment:
Q  157 gaagttagggttttgaattgcaatttaattgatgaaa 193  Q
    |||||||||||||||||||||||||| |||| |||||    
T  47974983 gaagttagggttttgaattgcaatttgattgttgaaa 47975019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0594 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0594
Description:

Target: scaffold0594; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 44 - 122
Target Start/End: Complemental strand, 2299 - 2219
Alignment:
Q  44 taaggtaagggtcggactagctt-ctctaataatgggtt-tataattctgaaatagggtttaacatgtttgttgttatttt 122  Q
    |||||||||||| |||||||||| || |||||||||||| ||||||||||||| ||||||||||||  |||||||| ||||    
T  2299 taaggtaagggtgggactagctttctataataatgggttgtataattctgaaaaagggtttaacatagttgttgttgtttt 2219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0230 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0230
Description:

Target: scaffold0230; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 137 - 193
Target Start/End: Original strand, 6866 - 6922
Alignment:
Q  137 agaagttagggttttgaaaagaagttagggttttgaattgcaatttaattgatgaaa 193  Q
    ||||||||| ||||||||||||||||||| |||||||||||||||| |||| |||||    
T  6866 agaagttagagttttgaaaagaagttaggattttgaattgcaatttgattgttgaaa 6922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 137 - 193
Target Start/End: Complemental strand, 10005 - 9949
Alignment:
Q  137 agaagttagggttttgaaaagaagttagggttttgaattgcaatttaattgatgaaa 193  Q
    ||||||||| ||||| |||||||||||||||||||||||||||||| |||| |||||    
T  10005 agaagttagagttttaaaaagaagttagggttttgaattgcaatttgattgttgaaa 9949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 137 - 193
Target Start/End: Complemental strand, 22102 - 22046
Alignment:
Q  137 agaagttagggttttgaaaagaagttagggttttgaattgcaatttaattgatgaaa 193  Q
    ||||||||| ||||| ||| |||||||||||||||||||||||||| |||| |||||    
T  22102 agaagttagagttttaaaatgaagttagggttttgaattgcaatttgattgttgaaa 22046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 44 - 122
Target Start/End: Original strand, 66072 - 66152
Alignment:
Q  44 taaggtaagggtcggactagctt-ctctaataatgggtt-tataattctgaaatagggtttaacatgtttgttgttatttt 122  Q
    |||||||||||| ||||||| || || |||||||||||| ||||||||||||| ||||||||||||| |||||||| ||||    
T  66072 taaggtaagggtgggactagatttctttaataatgggttgtataattctgaaaaagggtttaacatggttgttgttgtttt 66152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 44 - 110
Target Start/End: Complemental strand, 75989 - 75921
Alignment:
Q  44 taaggtaagggtcggactagc-ttctctaataatgggtt-tataattctgaaatagggtttaacatgtt 110  Q
    |||||||||||| |||||||| ||||| ||||||||||| ||| ||||| |||  ||||||||||||||    
T  75989 taaggtaagggtgggactagctttctccaataatgggttgtatgattctaaaaaggggtttaacatgtt 75921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0819 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0819
Description:

Target: scaffold0819; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 82 - 159
Target Start/End: Complemental strand, 5264 - 5183
Alignment:
Q  82 tataattctgaaatagggtttaacatgtttgttgttatttt---attttgatgattagagaagttaggg-ttttgaaaagaa 159  Q
    ||||||||||||| ||||||||||||| |||||||| || |   ||||||||||||| ||||||||||| ||||||||||||    
T  5264 tataattctgaaacagggtttaacatggttgttgttgttgtttgattttgatgattaaagaagttagggtttttgaaaagaa 5183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0676 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0676
Description:

Target: scaffold0676; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 44 - 105
Target Start/End: Complemental strand, 2933 - 2870
Alignment:
Q  44 taaggtaagggtcggactagctt-ctctaataatgggtt-tataattctgaaatagggtttaac 105  Q
    |||||||||||| |||||||||| ||||||||||||||| ||||||||||||| ||||||||||    
T  2933 taaggtaagggtgggactagctttctctaataatgggttgtataattctgaaaaagggtttaac 2870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0139 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: scaffold0139
Description:

Target: scaffold0139; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 137 - 182
Target Start/End: Original strand, 40294 - 40339
Alignment:
Q  137 agaagttagggttttgaaaagaagttagggttttgaattgcaattt 182  Q
    ||||||||||||| |||||||||||||||||||||||||| |||||    
T  40294 agaagttagggttgtgaaaagaagttagggttttgaattgaaattt 40339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0139; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 124 - 173
Target Start/End: Original strand, 40244 - 40292
Alignment:
Q  124 ttttgatgattagagaagttagggttttgaaaagaagttagggttttgaa 173  Q
    |||||||| ||| ||||||||||||||||||||||||||||| |||||||    
T  40244 ttttgatg-ttatagaagttagggttttgaaaagaagttaggattttgaa 40292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0139; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 173
Target Start/End: Original strand, 40275 - 40311
Alignment:
Q  137 agaagttagggttttgaaaagaagttagggttttgaa 173  Q
    |||||||||| ||||||||||||||||||||| ||||    
T  40275 agaagttaggattttgaaaagaagttagggttgtgaa 40311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0853 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0853
Description:

Target: scaffold0853; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 40 - 94
Target Start/End: Original strand, 2450 - 2506
Alignment:
Q  40 aatttaaggtaagggtcggactagc-ttctctaataatgggtt-tataattctgaaa 94  Q
    |||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||    
T  2450 aatttaaggtaagggtgggactagctttctctaataatgggttgtataattctgaaa 2506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0431 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0431
Description:

Target: scaffold0431; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 40 - 94
Target Start/End: Complemental strand, 5689 - 5633
Alignment:
Q  40 aatttaaggtaagggtcggactagc-ttctctaataatgggtt-tataattctgaaa 94  Q
    |||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||    
T  5689 aatttaaggtaagggtgggactagctttctctaataatgggttgtataattctgaaa 5633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1186 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold1186
Description:

Target: scaffold1186; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 44 - 105
Target Start/End: Complemental strand, 2072 - 2009
Alignment:
Q  44 taaggtaagggtcggactagctt-ctctaataatgggtt-tataattctgaaatagggtttaac 105  Q
    ||||||||||||  ||||||||| ||||||||||||||| ||||||||||||| ||||||||||    
T  2072 taaggtaagggtgagactagctttctctaataatgggttgtataattctgaaaaagggtttaac 2009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0231 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0231
Description:

Target: scaffold0231; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 44 - 105
Target Start/End: Original strand, 17521 - 17584
Alignment:
Q  44 taaggtaagggtcggactagc-ttctctaataatgggtt-tataattctgaaatagggtttaac 105  Q
    ||||||||||||||||||||| || ||||||||||| || ||||||||||||| ||||||||||    
T  17521 taaggtaagggtcggactagctttttctaataatggattgtataattctgaaaaagggtttaac 17584  T

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Target: scaffold0220 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 44 - 105
Target Start/End: Complemental strand, 14001 - 13938
Alignment:
Q  44 taaggtaagggtcggactagc-ttctctaataatgggtt-tataattctgaaatagggtttaac 105  Q
    |||||||||||| |||||||| ||||||||||||||||| || |||||||||| ||||||||||    
T  14001 taaggtaagggtgggactagctttctctaataatgggttgtaaaattctgaaaaagggtttaac 13938  T

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Target: scaffold0056 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 44 - 105
Target Start/End: Complemental strand, 18327 - 18264
Alignment:
Q  44 taaggtaagggtcggactagctt-ctctaataatgggtt-tataattctgaaatagggtttaac 105  Q
    ||||||||||||  ||||||||| ||||||||||||||| ||||||||||||| ||||||||||    
T  18327 taaggtaagggtgtgactagctttctctaataatgggttgtataattctgaaaaagggtttaac 18264  T

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Target: scaffold0005 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 44 - 105
Target Start/End: Original strand, 186196 - 186259
Alignment:
Q  44 taaggtaagggtcggactagctt-ctctaataatgggtt-tataattctgaaatagggtttaac 105  Q
    ||||||||||||  ||||||||| ||||||||||||||| ||||||||||||| ||||||||||    
T  186196 taaggtaagggtgagactagctttctctaataatgggttgtataattctgaaaaagggtttaac 186259  T

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Target: scaffold0505 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0505
Description:

Target: scaffold0505; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 44 - 105
Target Start/End: Complemental strand, 4988 - 4926
Alignment:
Q  44 taaggtaagggtcggactagctt-ctctaataatgggtttataattctgaaatagggtttaac 105  Q
    |||||||||||| |||||||||| |||||||||||| | |||||||||| || ||||||||||    
T  4988 taaggtaagggtgggactagctttctctaataatggttgtataattctgtaaaagggtttaac 4926  T

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Target: scaffold0061 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 44 - 104
Target Start/End: Original strand, 14586 - 14648
Alignment:
Q  44 taaggtaagggtcggactagctt-ctctaataatgggtt-tataattctgaaatagggtttaa 104  Q
    ||||||||||||  ||||||||| ||||||||||||||| ||||||||||||| |||||||||    
T  14586 taaggtaagggtgagactagctttctctaataatgggttgtataattctgaaaaagggtttaa 14648  T

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Target: scaffold0061; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 44 - 104
Target Start/End: Original strand, 23644 - 23706
Alignment:
Q  44 taaggtaagggtcggactagctt-ctctaataatgggtt-tataattctgaaatagggtttaa 104  Q
    ||||||||||||  ||||||||| ||||||||||||||| ||||||||||||| |||||||||    
T  23644 taaggtaagggtgagactagctttctctaataatgggttgtataattctgaaaaagggtttaa 23706  T

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Target: scaffold0040 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 137 - 193
Target Start/End: Original strand, 106232 - 106289
Alignment:
Q  137 agaagttagggttttgaaaagaagttaggg-ttttgaattgcaatttaattgatgaaa 193  Q
    ||||||||| ||||| |||||||||||||| |||||||||||||||| |||| |||||    
T  106232 agaagttagagttttaaaaagaagttagggtttttgaattgcaatttgattgttgaaa 106289  T

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Target: scaffold0878 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0878
Description:

Target: scaffold0878; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 44 - 105
Target Start/End: Original strand, 3422 - 3485
Alignment:
Q  44 taaggtaagggtcggactagc-ttctctaataatgggtt-tataattctgaaatagggtttaac 105  Q
    |||||||||||| |||||||| ||||||||||||| ||| ||| ||||||||| ||||||||||    
T  3422 taaggtaagggtgggactagctttctctaataatgcgttgtatgattctgaaaaagggtttaac 3485  T

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Target: scaffold0247 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 44 - 105
Target Start/End: Complemental strand, 1128 - 1065
Alignment:
Q  44 taaggtaagggtcggactagctt-ctctaataatgggtt-tataattctgaaatagggtttaac 105  Q
    ||||||||||||  ||||||||| |||||||||||| || ||||||||||||| ||||||||||    
T  1128 taaggtaagggtgagactagctttctctaataatggattgtataattctgaaaaagggtttaac 1065  T

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Target: scaffold0369 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 44 - 105
Target Start/End: Original strand, 15616 - 15678
Alignment:
Q  44 taaggtaagggtcggactagcttctctaataatgggtt-tataattctgaaatagggtttaac 105  Q
    |||||||||||| |||||| ||||||||||||||| || ||| ||||| ||| ||||||||||    
T  15616 taaggtaagggtgggactaacttctctaataatggtttgtatgattctaaaaaagggtttaac 15678  T

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Target: scaffold0174 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 65 - 122
Target Start/End: Complemental strand, 11646 - 11588
Alignment:
Q  65 ttctctaataatgggtt-tataattctgaaatagggtttaacatgtttgttgttatttt 122  Q
    |||||||| |||||||| ||||||||||||| ||||||||||||  |||||||| ||||    
T  11646 ttctctaaaaatgggttgtataattctgaaaaagggtttaacatcgttgttgttgtttt 11588  T

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Target: scaffold0174; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 103
Target Start/End: Complemental strand, 5506 - 5445
Alignment:
Q  44 taaggtaagggtcggactagctt-ctctaataatgggtt-tataattctgaaatagggttta 103  Q
    |||||||||||| |||||| ||| ||||||||||| ||| ||||||||||||| ||||||||    
T  5506 taaggtaagggtgggactacctttctctaataatgagttgtataattctgaaaaagggttta 5445  T

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Target: scaffold0174; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 44 - 110
Target Start/End: Complemental strand, 19908 - 19840
Alignment:
Q  44 taaggtaagggtcggactagctt-ctctaataatgggtt-tataattctgaaatagggtttaacatgtt 110  Q
    |||||||||||| ||||||| || ||||||||||||||| ||| ||||| |||  ||||||||||||||    
T  19908 taaggtaagggtaggactagatttctctaataatgggttgtatgattctaaaaaggggtttaacatgtt 19840  T

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Target: scaffold0439 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0439
Description:

Target: scaffold0439; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 175
Target Start/End: Complemental strand, 12219 - 12182
Alignment:
Q  138 gaagttagggttttgaaaagaagttagggttttgaatt 175  Q
    |||||||| |||||||||||||| ||||||||||||||    
T  12219 gaagttagagttttgaaaagaagctagggttttgaatt 12182  T

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Target: scaffold0017 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 182
Target Start/End: Complemental strand, 26655 - 26626
Alignment:
Q  153 aaaagaagttagggttttgaattgcaattt 182  Q
    ||||||||||||||||||||||||||||||    
T  26655 aaaagaagttagggttttgaattgcaattt 26626  T

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Target: scaffold0414 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0414
Description:

Target: scaffold0414; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 110
Target Start/End: Original strand, 11156 - 11228
Alignment:
Q  40 aatttaaggtaagggtcggactagc-ttctctaataatgggtt-tataattctgaaatagggtttaacatgtt 110  Q
    |||||||||||||| | |||||||| ||||||||||||||||| ||| ||||| |||  ||||||| ||||||    
T  11156 aatttaaggtaaggatgggactagctttctctaataatgggttgtatgattctaaaaaggggtttatcatgtt 11228  T

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Target: scaffold0379 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0379
Description:

Target: scaffold0379; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 44 - 110
Target Start/End: Complemental strand, 10999 - 10932
Alignment:
Q  44 taaggtaagggtcggactagctt-ctctaataatgggtt-tataattctgaaatagggtttaacatgtt 110  Q
    |||||||||||| | |||||||| ||||||||||||||| ||| ||||| ||| |||||||||||||||    
T  10999 taaggtaagggtggaactagctttctctaataatgggttgtatgattct-aaaaagggtttaacatgtt 10932  T

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Target: scaffold0308 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 156 - 192
Target Start/End: Complemental strand, 13354 - 13318
Alignment:
Q  156 agaagttagggttttgaattgcaatttaattgatgaa 192  Q
    ||||||||||||||||||||||||||| |||| ||||    
T  13354 agaagttagggttttgaattgcaatttgattgttgaa 13318  T

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Target: scaffold0180 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 156 - 192
Target Start/End: Original strand, 28467 - 28503
Alignment:
Q  156 agaagttagggttttgaattgcaatttaattgatgaa 192  Q
    ||||||||||||||||||||||||||| |||| ||||    
T  28467 agaagttagggttttgaattgcaatttgattgttgaa 28503  T

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Target: scaffold0149 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0149
Description:

Target: scaffold0149; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 157 - 193
Target Start/End: Complemental strand, 21500 - 21464
Alignment:
Q  157 gaagttagggttttgaattgcaatttaattgatgaaa 193  Q
    |||||||||||||||||||||||||| |||| |||||    
T  21500 gaagttagggttttgaattgcaatttcattgttgaaa 21464  T

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Target: scaffold0125 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0125
Description:

Target: scaffold0125; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 154 - 182
Target Start/End: Original strand, 7314 - 7342
Alignment:
Q  154 aaagaagttagggttttgaattgcaattt 182  Q
    |||||||||||||||||||||||||||||    
T  7314 aaagaagttagggttttgaattgcaattt 7342  T

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Target: scaffold0116 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 156 - 192
Target Start/End: Original strand, 35602 - 35638
Alignment:
Q  156 agaagttagggttttgaattgcaatttaattgatgaa 192  Q
    ||||||||||||||||||||||||||| |||| ||||    
T  35602 agaagttagggttttgaattgcaatttgattgttgaa 35638  T

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Target: scaffold0048 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 44 - 110
Target Start/End: Original strand, 68726 - 68794
Alignment:
Q  44 taaggtaagggtcggactagctt-ctctaataatgggtt-tataattctgaaatagggtttaacatgtt 110  Q
    |||||||||||| |||||| ||| ||||||||||||||| ||| ||||| |||  ||||||||||||||    
T  68726 taaggtaagggtgggactacctttctctaataatgggttatatgattctaaaaacgggtttaacatgtt 68794  T

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Target: scaffold0031 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 44 - 110
Target Start/End: Original strand, 127343 - 127411
Alignment:
Q  44 taaggtaagggtcggactagc-ttctctaataatgggtt-tataattctgaaatagggtttaacatgtt 110  Q
    |||||||||||| |||||||| |||||||||||||| || ||| ||||| |||  ||||||||||||||    
T  127343 taaggtaagggtgggactagctttctctaataatggattgtatgattctaaaaaggggtttaacatgtt 127411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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