View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0672_low_8 (Length: 402)
Name: NF0672_low_8
Description: NF0672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0672_low_8 |
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| [»] scaffold0063 (1 HSPs) |
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Alignment Details
Target: scaffold0063 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: scaffold0063
Description:
Target: scaffold0063; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 23 - 390
Target Start/End: Complemental strand, 10098 - 9731
Alignment:
| Q |
23 |
atcatcaacagctgagatgatacgagatcgcgtgcttattctgctcgcaatgatttctgatgaggatatagatgtggcagaattgatggctgatagtttg |
122 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
10098 |
atcatcaacagctgagatgatacgagatcgcgtgcttattctgcttgcaatgatttctgatgaggatatagatgtggcagagttgatggctgatagtttg |
9999 |
T |
|
| Q |
123 |
tggaagctggtcaggacagacaagaatactctgggtcattgctgtttgataaacaagttgtgtcaggaagctcaagttcctgttgaacctactgatgttt |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |
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| T |
9998 |
tggaagctggtcaggacagacaagaatactctgggtcattgctgtttgataaacaaactgtgtcaggcagctcaagttcctgttgaacctactgatgttt |
9899 |
T |
|
| Q |
223 |
atgtgaaatctttgagatttatatccgattcggttatggatggtttcgagaaggagcaggagagatatgacaaagagcttcagcagaagatggaacaaca |
322 |
Q |
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||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |||||| | |
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| T |
9898 |
atgtgaagtctttgagatttatatccgactcggttatggatggtttcgagaaggagcaggagacatatgacaaagaacttcagcagaagaatgaacaata |
9799 |
T |
|
| Q |
323 |
gcagcaacatcctcagatgatggaacaaaatcacaatcctcaggtacacccctctcagatgcaacagc |
390 |
Q |
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| T |
9798 |
gcagcaacatcctcagatgatggagcaggatcacattcctcaggtacacccctctcagatgcagcagc |
9731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 290; Significance: 1e-162; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 21 - 382
Target Start/End: Complemental strand, 15535409 - 15535048
Alignment:
| Q |
21 |
acatcatcaacagctgagatgatacgagatcgcgtgcttattctgctcgcaatgatttctgatgaggatatagatgtggcagaattgatggctgatagtt |
120 |
Q |
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||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |
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| T |
15535409 |
acatcttcaacagctgagatgatacgagatcgtgtgcttattctgctcgcaatgatttttgatgaggatatagatgtggcagagttgatggctgatagtt |
15535310 |
T |
|
| Q |
121 |
tgtggaagctggtcaggacagacaagaatactctgggtcattgctgtttgataaacaagttgtgtcaggaagctcaagttcctgttgaacctactgatgt |
220 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |
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| T |
15535309 |
tgtggaagctggtcaggacagacaagaatactctgggtcattgttgtttgataaacaaactgtgtcaggcagctcaagttcctgttgaacctactgatgt |
15535210 |
T |
|
| Q |
221 |
ttatgtgaaatctttgagatttatatccgattcggttatggatggtttcgagaaggagcaggagagatatgacaaagagcttcagcagaagatggaacaa |
320 |
Q |
| |
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||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| | |
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| T |
15535209 |
ttatgtgaagtctttgagatttatatccgattcggtcatggatggtttggagaaggagcaggagagatatgataaagagcttcagcagaagatggaacca |
15535110 |
T |
|
| Q |
321 |
cagcagcaacatcctcagatgatggaacaaaatcacaatcctcaggtacacccctctcagat |
382 |
Q |
| |
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||||||||||||||| |||||||||| ||| |||||| ||||||||||||||| |||||||| |
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| T |
15535109 |
cagcagcaacatcctgagatgatggagcaagatcacagtcctcaggtacacccttctcagat |
15535048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 21 - 390
Target Start/End: Original strand, 22236066 - 22236426
Alignment:
| Q |
21 |
acatcatcaacagctgagatgatacgagatcgcgtgcttattctgctcgcaatgatttctgatgaggatatagatgtggcagaattgatggctgatagtt |
120 |
Q |
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|||||||||||||||||||||||||||||||||||| | ||| |||||||||| ||||||||| ||||||||| ||||||||| |||||||||||||||| |
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| T |
22236066 |
acatcatcaacagctgagatgatacgagatcgcgtgataattttgctcgcaataatttctgataaggatataggtgtggcagagttgatggctgatagtt |
22236165 |
T |
|
| Q |
121 |
tgtggaagctggtcaggacagacaagaatactctgggtcattgctgtttgataaacaagttgtgtcaggaagctcaagttcctgttgaacctactgatgt |
220 |
Q |
| |
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|||||||||||||| | ||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||| |||||| |
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| T |
22236166 |
tgtggaagctggtccgaacagataagaatacgctgggtcattgttgtttgataaacaagttgtgtcaggaagctcatgttcctgtcgaacctattgatgt |
22236265 |
T |
|
| Q |
221 |
ttatgtgaaatctttgagatttatatccgattcggttatggatggtttcgagaaggagcaggagagatatgacaaagagcttcagcagaagatggaacaa |
320 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||| |
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| T |
22236266 |
ttatgtgaaatctttgagatttatatccgattcggttatggatggtttcgagaaggagtaggaaagatatgacaaagagcttcataagaagatggaa--- |
22236362 |
T |
|
| Q |
321 |
cagcagcaacatcctcagatgatggaacaaaatcacaatcctcaggtacacccctctcagatgcaacagc |
390 |
Q |
| |
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|||||||||||||||||||| || |||||| ||||||||||||||||||||||||||| |||| |
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| T |
22236363 |
------caacatcctcagatgatggagcagcatcacattcctcaggtacacccctctcagatgcagcagc |
22236426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 34 - 247
Target Start/End: Complemental strand, 42782296 - 42782085
Alignment:
| Q |
34 |
ctgagatgatacgagatcgcgtgcttattctgctcgcaatgatttctgatgaggatatagatgtggcagaattgatggctgatagtttgtggaagctggt |
133 |
Q |
| |
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|||||||||| |||| || ||| ||||| |||| |||||||| ||||| |||||||||||||||| | ||||| ||||||||||||||||||| | |
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| T |
42782296 |
ctgagatgatcagagaccgagtgattattttgctggcaatgatagctgataaggatatagatgtggccgggctgatgactgatagtttgtggaagctaat |
42782197 |
T |
|
| Q |
134 |
caggacagacaagaatactctgggtcattgctgtttgataaacaagttgtgtcaggaagctcaagttcctgttgaacctactgatgtttatgtgaaatct |
233 |
Q |
| |
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| || || |||||||||||||| |||||||||| || ||||| ||||| |||| |||||| ||||| ||||||||||||||||| ||||||| ||| |
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| T |
42782196 |
tggtactgataagaatactctgggacattgctgtt--attaacaaattgtgccaggcagctcaggttccagttgaacctactgatgtgtatgtgaggtct |
42782099 |
T |
|
| Q |
234 |
ttgagatttatatc |
247 |
Q |
| |
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||||| ||| |||| |
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|
| T |
42782098 |
ttgaggtttttatc |
42782085 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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