View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0672_low_9 (Length: 398)
Name: NF0672_low_9
Description: NF0672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0672_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-125; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 104 - 346
Target Start/End: Original strand, 54107098 - 54107341
Alignment:
| Q |
104 |
aagaatataatgaaagtaaagctggagaaaatatcaatcgattcattgaagaattgaaaattacacttaatttgaattaaatattttattgttaaaatgg |
203 |
Q |
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| T |
54107098 |
aagaaaataatgaaagtaaagctggagaaaatatcaatcgattcattgaagaattgaaaattacacttaatttgaattaaatattttattgttaaaatgg |
54107197 |
T |
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| Q |
204 |
caccaattttaaaacaaaatact-attattagcaaaaatacgtaagaaatttgtaggtcctgttgccactttctcatttcttctctttcgtttactaatt |
302 |
Q |
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| T |
54107198 |
caccaattttaaaacaaaatactaattattagcaaaaatacgtaagaaacttgtaggtcctgttgccactttctcatttcttctctttcgtttactaatt |
54107297 |
T |
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| Q |
303 |
attgtctacatgaatgttatctttaacaaattagttcttccatt |
346 |
Q |
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| T |
54107298 |
attgtctacatgaatgttatctttaacaaattagttcttccatt |
54107341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 7e-25; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 23 - 81
Target Start/End: Original strand, 37704454 - 37704512
Alignment:
| Q |
23 |
accaaaaaggttgacttattagattgtttgcaaattgagtctacgtattcccttatttt |
81 |
Q |
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| T |
37704454 |
accaaaaaggttgacttattagattgtttgcaaattgagtctacgtattcccttatttt |
37704512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 23 - 81
Target Start/End: Original strand, 37698636 - 37698694
Alignment:
| Q |
23 |
accaaaaaggttgacttattagattgtttgcaaattgagtctacgtattcccttatttt |
81 |
Q |
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| T |
37698636 |
accaaaaagtttgacttattagattgtttacaaattgagtctaagtattcccttatttt |
37698694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 81
Target Start/End: Original strand, 37698974 - 37699033
Alignment:
| Q |
24 |
ccaaaaaggttgacttattagattgtttgcaaa--ttgagtctacgtattcccttatttt |
81 |
Q |
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|||||||| |||| |||||||||||||| |||| ||||||||| ||||||||||||||| |
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| T |
37698974 |
ccaaaaagtttgagttattagattgtttacaaacattgagtctaggtattcccttatttt |
37699033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 81
Target Start/End: Original strand, 37437520 - 37437578
Alignment:
| Q |
23 |
accaaaaaggttgacttattagattgtttgcaaattgagtctacgtattcccttatttt |
81 |
Q |
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||||||||| |||||||||||||||||| |||||| |||||| ||||||||| |||| |
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| T |
37437520 |
accaaaaagtctgacttattagattgtttacaaattcagtctagctattcccttgtttt |
37437578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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