View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0673-Insertion-1 (Length: 998)
Name: NF0673-Insertion-1
Description: NF0673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0673-Insertion-1 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 478; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 473 - 998
Target Start/End: Complemental strand, 8926063 - 8925538
Alignment:
| Q |
473 |
cacttcaatattcagctatatatgaatgagagagtatatgctgtgaggagtgcgattcttaaggtgcaatgtaatgtatttataggcatccaacttgaag |
572 |
Q |
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||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8926063 |
cacttcaatattcagctatatgtgaatgagag--tatatgctgtgaggagtgcgattcttaaggtgcaatgtaatgtatttataggcatccaacttgaag |
8925966 |
T |
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| Q |
573 |
gaatggttaagaatggaaaaactatttatttaattaacaaaagtattgtattattgtcacaaattctaatgtgtatatatgcatcaagaggataattctt |
672 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8925965 |
gaatggttaagaatggaaaaactatttatttaattaacaaaagtattgtattattgtcacaaattctaatgtgtatatatgcatcaagaggataattctt |
8925866 |
T |
|
| Q |
673 |
acaaattaatagactaatatagtaatacaaaacataaaacaaatgcaaatgaattgacttagtataaaataaaataattcttacatatatttgatgccta |
772 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
8925865 |
acaaattaatagactaatatagtaatacaaaacataaaacaaatgcaaatgaattgatttagtataaaataaaataattcttacatatatttgatgccta |
8925766 |
T |
|
| Q |
773 |
taaatgactggatttagttttgcttatattaatttattttatgtgatttttatcatttcaaaatataaaattgttgttgttcat--aaacaattataaag |
870 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |
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| T |
8925765 |
taaatgactggattttgttttgcttatattaatttattttatgtgatttttatcatttcaaaatataaaattgttgttgtccataaaaacaattataaag |
8925666 |
T |
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| Q |
871 |
aaacaaataatgttttttattataaaatatatcatgcaattcattaatcatattaaatattttttccacctatgtagtccaacttaactaaagagataag |
970 |
Q |
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| T |
8925665 |
aaacaaataatgttttttattataaaatatatcatgcaatacattaatcatattaaatattttttccacctatgtagtccgacttaactaaagagataag |
8925566 |
T |
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| Q |
971 |
tctttgtaattgtccgcatgtcatccag |
998 |
Q |
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| T |
8925565 |
tctttgtagttgtccgcatgtcatccag |
8925538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 204 - 423
Target Start/End: Complemental strand, 8926340 - 8926113
Alignment:
| Q |
204 |
tatatatgcatgtttagaatcagagtgaacttaacgaggtgacacgacacatcgtgattctgtcaagttcaccgttaatctaaacatgcac--------a |
295 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
8926340 |
tatatatgcatgtttagaatcaaagtgaacttaacgaggtgacacgacacatcgtgattctgtcaagttcaccgttaatctaaacatgcactgtattaaa |
8926241 |
T |
|
| Q |
296 |
gagaaattttgatgatgtatagaactagcacctcaaagaagccccagttctcacaagcatctttgatcatctccatggtagcttttctctcttctgtgtt |
395 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8926240 |
gagaaattttgatgatgtatagaactagtacctcaaagaagccccagttctcacaagcatctttgatcatctccatggtagcttttctctcttctgtgtt |
8926141 |
T |
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| Q |
396 |
aagcttccccatgtcaacaactggaaag |
423 |
Q |
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| T |
8926140 |
aagcttccccatgtcaacaactggaaag |
8926113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 140; E-Value: 8e-73
Query Start/End: Original strand, 8 - 147
Target Start/End: Complemental strand, 8926532 - 8926393
Alignment:
| Q |
8 |
atttctgactgaacacactccaaacctttgcttgctaccatttctttgaacctttgttccatacacttcttgtagtgttcttttgtgagcttctccactt |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8926532 |
atttctgactgaacacactccaaacctttgcttgctaccatttctttgaacctttgttccatacacttcttgtagtgttcttttgtgagcttctccactt |
8926433 |
T |
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| Q |
108 |
tgtccatcaactcaatagatatactatggttcacacactt |
147 |
Q |
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| T |
8926432 |
tgtccatcaactcaatagatatactatggttcacacactt |
8926393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 2e-36; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 7 - 141
Target Start/End: Complemental strand, 55523280 - 55523146
Alignment:
| Q |
7 |
aatttctgactgaacacactccaaacctttgcttgctaccatttctttgaacctttgttccatacacttcttgtagtgttcttttgtgagcttctccact |
106 |
Q |
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|||||| |||||| || |||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||| |||||||| ||| |
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| T |
55523280 |
aatttcagactgagcaaactctaaacctttgcttgctaccatttctttgaacctttgctccatacgcttcttgtagttttcttttgtcagcttctcaact |
55523181 |
T |
|
| Q |
107 |
ttgtccatcaactcaatagatatactatggttcac |
141 |
Q |
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|||||||| ||||| || ||||| | ||||||||| |
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| T |
55523180 |
ttgtccatgaactctatggatatcccatggttcac |
55523146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 325 - 422
Target Start/End: Complemental strand, 55522810 - 55522713
Alignment:
| Q |
325 |
acctcaaagaagccccagttctcacaagcatctttgatcatctccatggtagcttttctctcttctgtgttaagcttccccatgtcaacaactggaaa |
422 |
Q |
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||||||||||| ||||| || |||||||||||||| || ||||||||||| | | | ||||||| |||||||| ||| ||||||||| |||||||| |
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| T |
55522810 |
acctcaaagaaaccccaattttcacaagcatcttttatgatctccatggttgatgctttctcttcagtgttaagattcttcatgtcaactactggaaa |
55522713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 325 - 386
Target Start/End: Complemental strand, 37628757 - 37628696
Alignment:
| Q |
325 |
acctcaaagaagccccagttctcacaagcatctttgatcatctccatggtagcttttctctc |
386 |
Q |
| |
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||||||||||| |||||||| ||||||||||| ||||| ||||||| |||||||||||||| |
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| T |
37628757 |
acctcaaagaatccccagttttcacaagcatccttgattttctccatagtagcttttctctc |
37628696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 325 - 383
Target Start/End: Original strand, 36872707 - 36872765
Alignment:
| Q |
325 |
acctcaaagaagccccagttctcacaagcatctttgatcatctccatggtagcttttct |
383 |
Q |
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||||||||||| ||||| |||||||||||||| || || ||||||||||| ||||||| |
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| T |
36872707 |
acctcaaagaatccccaattctcacaagcatccttaattttctccatggtatcttttct |
36872765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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