View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0673-Insertion-10 (Length: 325)
Name: NF0673-Insertion-10
Description: NF0673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0673-Insertion-10 |
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Alignment Details
Target: chr6 (Bit Score: 147; Significance: 2e-77; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 8 - 183
Target Start/End: Complemental strand, 8133391 - 8133216
Alignment:
| Q |
8 |
gagatgcattgaaaatctctcgtcactgtttatatgtccaaatttaataaaatnnnnnnncataggtgcatagatatattacaagtttctgcttagtgaa |
107 |
Q |
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| T |
8133391 |
gagatgcattgaaaatctctcgtcactatttatatgtccaaatttaataaaataaaaaaacataggtgcatagatatattacaagtttctgcttagtgaa |
8133292 |
T |
|
| Q |
108 |
taagttgccattctcattgatcataaaaatctctagagtctaacatgtgaattttcttcttcattcatcactgcag |
183 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
8133291 |
taagttgccattctcattgatcataaaaatctctagagtctaacatgtgaattttcttcttcattcttcactgcag |
8133216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 9 - 167
Target Start/End: Complemental strand, 8151333 - 8151172
Alignment:
| Q |
9 |
agatgcattgaaaatctctcgtcactgtttatatgtccaaatttaataaaatnnnnnnn-cataggtgcatagatatattacaagtttctgcttagtgaa |
107 |
Q |
| |
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|||||||||||||||||||||||||| ||||||| ||||||||| |||||| ||||| |||| ||||||||||||||||| ||||| | ||| |
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| T |
8151333 |
agatgcattgaaaatctctcgtcactatttatatatccaaatttcgtaaaataaaaaatacatagttgcaaagatatattacaagtttttgctttgcgaa |
8151234 |
T |
|
| Q |
108 |
taag--ttgccattctcattgatcataaaaatctctagagtctaacatgtgaattttcttct |
167 |
Q |
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|||| ||| |||||||||||||||| |||||||||| ||||| | |||||||||||||||| |
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| T |
8151233 |
taagaattgacattctcattgatcatgaaaatctctaaagtctgagatgtgaattttcttct |
8151172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 292 - 325
Target Start/End: Complemental strand, 8133107 - 8133074
Alignment:
| Q |
292 |
tctactcataatttgaatcagaataacgtatact |
325 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
8133107 |
tctactcataatttgaatcagaataacgtatact |
8133074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 178
Target Start/End: Complemental strand, 2806938 - 2806877
Alignment:
| Q |
116 |
cattctcattgatcataaaaatctctagagtctaacatgtgaattttcttcttcattcatcac |
178 |
Q |
| |
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||||||||||||| |||||||||||| ||||| ||||||||| ||| ||||| ||||||||| |
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| T |
2806938 |
cattctcattgattataaaaatctctgaagtctgacatgtgaaattt-ttcttaattcatcac |
2806877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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