View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0673-Insertion-11 (Length: 185)
Name: NF0673-Insertion-11
Description: NF0673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0673-Insertion-11 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 125; Significance: 1e-64; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 10 - 185
Target Start/End: Complemental strand, 34008571 - 34008399
Alignment:
| Q |
10 |
atgaacatctttaactacgtgataccattgtgtctacaaattcaacttgttttgcgtaattnnnnnnnnnnnnnntcaacttatttccaaattctacccc |
109 |
Q |
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| T |
34008571 |
atgaacatctttaactacgtgataccattgtgtctacaaattcaacttgttttgcgtaattaaaaaaaaaaa---tcaacttatttccaaattctacccc |
34008475 |
T |
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| Q |
110 |
cacttatatcaagactaattcaaagttaattcggtcattctacaccaccatttatgtttcatgcctaacgctttaa |
185 |
Q |
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| T |
34008474 |
cacttatatcaagactaattcaaagttaattcggtcattctacaccaccatttatgcttcatgcctaacgctttaa |
34008399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 85 - 176
Target Start/End: Complemental strand, 34000640 - 34000549
Alignment:
| Q |
85 |
tcaacttatttccaaattctacccccacttatatcaagactaattcaaagttaattcggtcattctacaccaccatttatgtttcatgccta |
176 |
Q |
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| T |
34000640 |
tcaacttgttcccaaattctacccccacttatataaagactaattaaaagtcaatttggtcatcctacaccaccacatatatttcatgccta |
34000549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 7e-20
Query Start/End: Original strand, 85 - 174
Target Start/End: Complemental strand, 33995883 - 33995795
Alignment:
| Q |
85 |
tcaacttatttccaaattctacccccacttatatcaagactaattcaaagttaattcggtcattctacaccaccatttatgtttcatgcc |
174 |
Q |
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| T |
33995883 |
tcaacttgtttccaaattctacccc-acttatatgaagactaattaaaagttaatttggccattctacaccaccatgtatattccatgcc |
33995795 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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