View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0673-Insertion-2 (Length: 954)
Name: NF0673-Insertion-2
Description: NF0673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0673-Insertion-2 |
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Alignment Details
Target: chr3 (Bit Score: 759; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 759; E-Value: 0
Query Start/End: Original strand, 12 - 847
Target Start/End: Original strand, 10367711 - 10368546
Alignment:
| Q |
12 |
tttcattagtaaaatggctatgacatacaagttcattggacaaagaaaaagtgatcattcaacgacaagctcaacggtctttaaaagaacatttttattg |
111 |
Q |
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| T |
10367711 |
tttcattagtaaaatggctatgacatgcaagttcattggacaaagaaaaagtgatcgttcatctacaagctcaaaggtctttaaaagatcatttttattg |
10367810 |
T |
|
| Q |
112 |
attgctatagaaagaaccgagaacgagtcattgtatcgtggagaaatttatgattcttcaacaaacgaatggactgatatacaaagtctgcctttagatt |
211 |
Q |
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| T |
10367811 |
attgctataggaagaaccgtgaacgagtcattgtatcgtggagaaatttatgattcttcaacaaatgaatggactgatatacaaagtcttcctttagatt |
10367910 |
T |
|
| Q |
212 |
ttgggggagttagttctggaactgtttgtaagagcaagttttttgtttgttcaaggaatgaaaagcttgcagcatatgacatagaaagaggtttttggat |
311 |
Q |
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| T |
10367911 |
ttgggggagttagttctggaactgtttgtaagaccaagttttatgtttgttcaaggaatgaaaagcttgcagcatatgacatagaaagaggtttttggat |
10368010 |
T |
|
| Q |
312 |
tgtaattcaaacatctcaaccattcccatctcatgtatatgctaatccataccaccctcatctcgtatcttgaaatggacgacttttcgtgatttccagt |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
10368011 |
tgtaattcaaacatctcaaccattcccatctcatgtatatgctaatccataccaccctcatctcgtatcttgtaatggacgacttttcgtgatttccagt |
10368110 |
T |
|
| Q |
412 |
tgcttttggaatggacaacattctatggttagaaaattatttgagcttcatcttgtggatcatacatggactgaaagccgttggatttcgatacagtttc |
511 |
Q |
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| T |
10368111 |
tgcttttggaatggacaacattctatggttagaaaattatttgagcttcatcttgtggatcatacatggactgaaagccgttggatttcgatacagtttc |
10368210 |
T |
|
| Q |
512 |
gaattcgattcacttgcacccgacccaatagcattgaaatcaatgcacatgatcagtaggcaatgataagatagttttattttgttggagtcttttacat |
611 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
10368211 |
gaattcgattcacttgcacccgacccaatagcattgaaatcaatgcacatgatcagtaagcaatgataagatagttttattttgttggagtcttttacat |
10368310 |
T |
|
| Q |
612 |
catctgttagaataaattcacattgaaattttannnnnnngacaatcaagttttggttagcatgagcctatataaatgtcaaggctattttacttttctt |
711 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10368311 |
catctgttagaataaattcacattgaaattttatttttttgacaatcaagttttggttagcatgagcctatataaatgtcaaggctattttacttttctt |
10368410 |
T |
|
| Q |
712 |
gagttcttagtttgcaacagttatgtttcatctcattaacaataatttttaattctacgagagctttcaattcaacggattgattgatttaatatgtcat |
811 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10368411 |
gagttcttagtttgcaacagttatgtttcatctcattaacaataatttttaattctacgagagctttcaattcaacggattgattgatttaatatgtcat |
10368510 |
T |
|
| Q |
812 |
ctacaaagagcctatataaatgtcaccaaacttgtg |
847 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
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| T |
10368511 |
ctacaaagagcctatataaatgtcaccaaacttgtg |
10368546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 274 - 321
Target Start/End: Complemental strand, 54155266 - 54155219
Alignment:
| Q |
274 |
aagcttgcagcatatgacatagaaagaggtttttggattgtaattcaa |
321 |
Q |
| |
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|||||||||||||||||||||||| ||||||| ||||||| ||||||| |
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| T |
54155266 |
aagcttgcagcatatgacatagaacgaggtttctggattgcaattcaa |
54155219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 270 - 336
Target Start/End: Original strand, 43658309 - 43658375
Alignment:
| Q |
270 |
tgaaaagcttgcagcatatgacatagaaagaggtttttggattgtaattcaaacatctcaaccattc |
336 |
Q |
| |
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||||||||||| ||| ||||||||||||| || ||||||||||| ||| ||||||| || ||||||| |
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| T |
43658309 |
tgaaaagcttgtagcgtatgacatagaaaaagatttttggattgcaatacaaacatatctaccattc |
43658375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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