View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0673-Insertion-4 (Length: 704)

Name: NF0673-Insertion-4
Description: NF0673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0673-Insertion-4
NF0673-Insertion-4
[»] chr6 (1 HSPs)
chr6 (8-684)||(34079933-34080609)


Alignment Details
Target: chr6 (Bit Score: 636; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 636; E-Value: 0
Query Start/End: Original strand, 8 - 684
Target Start/End: Complemental strand, 34080609 - 34079933
Alignment:
Q  8 taatcttggtaaaatatgtgttcagttttatcaaaacagcgatttttctaaaatcattaaaaatgtccgcagttttatacatcaactgctattttgattt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34080609 taatcttggtaaaatatgtgttcagttttatcaaaacagcgatttttctaaaatcattaaaaatgtccgcagttttatacatcaactgctattttgattt 34080510  T
Q  108 ctatgttgctcaagtcctacggaaaattgagcagagcgaagaatattgaatggaacaacctgtatataatttccttagcataatggttcacctatataaa 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34080509 ctatgttgctcaagtcctacggaaaattgagcagagcgaagaatattgaatggaacaacctgtatataatttccttagcataatggttcacctatataaa 34080410  T
Q  208 ctatatcagttattttttgcactagtacggtatattttacggtgcagggaaattatctacctttcacacactttttgtatcatctgcatgtttcaatctg 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34080409 ctatatcagttattttttgcactagtacggtatattttacggtgcagggaaattatctacctttcacacactttttgtatcatctgcatgtttcaatctg 34080310  T
Q  308 atcgtatcagatattttcaaagggaattcacaaaaatacctagttatcctagttatcaatagatcatcaactttgtcaaatgtagtacttcctgtatttc 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||    
T  34080309 atcgtatcagatattttcaaagggaattcacaaaaatacctagttatcctagttatcaatagatcatcaactttgtcaaatgtagtactccctctatttc 34080210  T
Q  408 gtaactattgatttttaggaatctacaatataattaatgcnnnnnnncaacttttccctctgtttctgttatacaaattagacctgtaatttctagcctg 507  Q
    ||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  34080209 gtaactattgatttttaggaatctacaatataattaatgctttttttcaacttttccctctgtttctgttttacaaattagacctgtaatttctagcctg 34080110  T
Q  508 gatttatgcattgggtttgttacaagtcatttgataaattgatatcctcactttcaacttgggttttagtcttaagaaaataggatatcaattgttactt 607  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  34080109 gatttatgcattgggtttgttacaagtcatttgataaattgatatcctcactttcaacttggattttagtcttaagaaaataggatatcaattgttactt 34080010  T
Q  608 tagttgacatgtcgtaatatactgaatacttgtccgttgacattctattgcacaggtgacatttatcagtgggtagc 684  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34080009 tagttgacatgtcgtagtatactgaatacttgtccgttgacattctattgcacaggtgacatttatcagtgggtagc 34079933  T

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