View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0673-Insertion-5 (Length: 670)
Name: NF0673-Insertion-5
Description: NF0673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0673-Insertion-5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 354; Significance: 0; HSPs: 37)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 7 - 491
Target Start/End: Original strand, 3340365 - 3340849
Alignment:
| Q |
7 |
agaaatggtccactctaccagatcttgtgtttgatcgtcgatgtgtatctactgaaacatccaaagacccttcagttattgacagcaagtttttaagaat |
106 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||||| |
|
|
| T |
3340365 |
agaaatggtccactttaccagatcttgtgtttgatcgtgaatgtgtatctactgaaacttccaaacacccttcagttattgagagcaagtttttaagaat |
3340464 |
T |
|
| Q |
107 |
tgttgatcatgtacttttacttcattctgggccaatcaacaagtttgaggtctcagactccaatcaatatttcactattggtgtgaactctatggctgat |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3340465 |
tgttgatcatgtacttttacttcattctgggccaatcaacaagtttgaggtctcggactccaatcaatatttcactattggtgtgaactctatggctgat |
3340564 |
T |
|
| Q |
207 |
attgattggtggatttttcagaaatccaaaaggtatattaaagagcttgtgctggacagtaggttaaaacaacgctataagataccttggtgcttatact |
306 |
Q |
| |
|
|||||| |||||||||||||| |||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||| |||||||| ||||||| || |
|
|
| T |
3340565 |
attgatcagtggatttttcagatatccaaaaggtatattaaagagtttgtgctggacattaggttaaaaccacgctataaaataccttgctgcttattct |
3340664 |
T |
|
| Q |
307 |
cttgtcaaagtttacatcatttagaactgaattattgttgtcttaaacctccaacaacgtttgaaggcttccggaatttgaaaagtctttatatgtctga |
406 |
Q |
| |
|
||||||||||||| || ||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||| | ||| ||| |
|
|
| T |
3340665 |
cttgtcaaagtttgcaacatttagaactgaattattgttgccttaatcctccaacgacgtttgaaggcttccggaatttgaaaagtctttctttgtttga |
3340764 |
T |
|
| Q |
407 |
agttacaatgattcaagatgattttgaaaacatgatatctggctgccccctgcttgagaaattgacattgata-aaaattgatggt |
491 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||| |||||||||| ||| |||||||||||| |
|
|
| T |
3340765 |
agttacaatgactcaagatgcttttgaaaacatgatatgtggctgccccctgcttgaagaattgacatt-atataaaattgatggt |
3340849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 9 - 653
Target Start/End: Complemental strand, 2948639 - 2947995
Alignment:
| Q |
9 |
aaatggtccactctaccagatcttgtgtttgatcgtcgatgtgtatctactgaaacatccaaagacccttcagttattgacagcaagtttttaagaattg |
108 |
Q |
| |
|
||||||||||| | ||||||||||||||||||| |||||||||||||||||| || ||||||||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
2948639 |
aaatggtccacacaaccagatcttgtgtttgatagtcgatgtgtatctactgcaatttccaaagacccttcagttattgagagcaagtttttgagaattg |
2948540 |
T |
|
| Q |
109 |
ttgatcatgtacttttacttcattctgggccaatcaacaagtttgaggtctcagactccaatcaatatttcactattggtgtgaactctatggctgatat |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| | ||| ||||| ||||||| ||||||| ||||| |
|
|
| T |
2948539 |
ttgatcatgtacttttacttcattctgggccaatcaacaagtttgaggtctctgactcctatcgtgacatcattattgatgtgaacgctatggcagatat |
2948440 |
T |
|
| Q |
209 |
tgattggtggatttttcagaaatccaaaaggtatattaaagagcttgtgctggacagtaggttaaaacaacgctataagataccttggtgcttatactct |
308 |
Q |
| |
|
|||| |||||||| ||| | || |||| ||||||||||| ||||| |||||| | | || | ||||||||||||||||||| | ||||| ||| |
|
|
| T |
2948439 |
tgatcggtggattcgtcatctaaccggaaggcatattaaagagtttgtgttggacatttgttttgatcaacgctataagataccttcatccttattctcc |
2948340 |
T |
|
| Q |
309 |
tgtcaaagtttacatcatttagaactgaattattgttgtcttaaacctccaacaacgtttgaaggcttccggaatttgaaaagtctttatatgtctgaag |
408 |
Q |
| |
|
|| ||| |||||||||||||||| |||||||||||||| |||||||||||||||| ||||||||||||||||| | |||||| ||||||| || | | |
|
|
| T |
2948339 |
tgccaaggtttacatcatttagatctgaattattgttggcttaaacctccaacaaagtttgaaggcttccggagtatgaaaattctttatttgaatcggg |
2948240 |
T |
|
| Q |
409 |
ttacaatgattcaagatgattttgaaaacatgatatctggctgccccctgcttgagaaattgacattgataaaaattgatggtgtaacacagattaatat |
508 |
Q |
| |
|
||||||||| |||||||| ||| | |||||||||| |||||||||| |||| ||||||||||||||| ||||||||||||| |||| || |||||||| |
|
|
| T |
2948239 |
ttacaatgagtcaagatgctttcaataacatgatatatggctgccccgtgctagagaaattgacattggcaaaaattgatggtttaactcatattaatat |
2948140 |
T |
|
| Q |
509 |
tcatgcaccaaatctcaaggattttagtatatgtgatgaatttgagagtatcaactttgaccacacttttcaattagctatggtatctgtttgtttgatc |
608 |
Q |
| |
|
||||||||||||||||||| |||| | ||||||||||||||||| ||||||||| |||||||||||||||||| |||| ||| | ||| |
|
|
| T |
2948139 |
tcatgcaccaaatctcaagttttttgaagtcgacgatgaatttgagagtattaactttgacaacacttttcaattagctaatgtattcatttatatgaaa |
2948040 |
T |
|
| Q |
609 |
actaaaagcaatcaaattagattgcatggatggtctagcaatttg |
653 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
2948039 |
tctaaaagcaatcaaggtagattgcatggattctctagcaatttg |
2947995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 7 - 665
Target Start/End: Original strand, 3349239 - 3349897
Alignment:
| Q |
7 |
agaaatggtccactctaccagatcttgtgtttgatcgtcgatgtgtatctactgaaacatccaaagacccttcagttattgacagcaagtttttaagaat |
106 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||||| ||| | | |||||||||||||| ||||||||||| ||||| |
|
|
| T |
3349239 |
agaaatggtccacactaccagatcttgtgtttgatagtctatgtgtatctactgaaacttccctaaaaccttcagttattgagagcaagtttttgagaat |
3349338 |
T |
|
| Q |
107 |
tgttgatcatgtacttttacttcattctgggccaatcaacaagtttgaggtctcagactccaatcaatatttcactattggtgtgaactctatggctgat |
206 |
Q |
| |
|
| |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||| || ||| |||| |||| |||||| ||||| |
|
|
| T |
3349339 |
tattgatcatgtacttttacttcattctgggctaatcaacaagtttgaggtctccgaccccaatcgtgatatcattattaatgtgtactctacaactgat |
3349438 |
T |
|
| Q |
207 |
attgattggtggatttttcagaaatccaaaaggtatattaaagagcttgtgctggacagtaggttaaaacaacgctataagataccttggtgcttatact |
306 |
Q |
| |
|
|||||| |||||||| |||| | || ||| ||||||||||| ||||| |||||| ||| || | |||||||| | |||||||| | ||||| || |
|
|
| T |
3349439 |
attgatcggtggattcttcatctaaccggaagacatattaaagagtttgtgttggacattagttttgatcaacgctaaatgataccttcatccttattct |
3349538 |
T |
|
| Q |
307 |
cttgtcaaagtttacatcatttagaactgaattattgttgtcttaaacctccaacaacgtttgaaggcttccggaatttgaaaagtctttatatgtctga |
406 |
Q |
| |
|
| || ||| ||||||| |||||| | ||||||||||| || |||||||||||||||| |||||||||||||||||| |||||||||||||| || | |
|
|
| T |
3349539 |
cctgccaaggtttacaacatttaaatctgaattattgctggcttaaacctccaacaatttttgaaggcttccggaatctgaaaagtctttatttgaatcg |
3349638 |
T |
|
| Q |
407 |
agttacaatgattcaagatgattttgaaaacatgatatctggctgccccctgcttgagaaattgacattgataaaaattgatggtgtaacacagattaat |
506 |
Q |
| |
|
|||||||||| |||||||| ||| | |||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||| |||| || |||||| |
|
|
| T |
3349639 |
ggttacaatgactcaagatgctttcaataacatgatgtctggctgccccctgcttgagagattgacattgacaaaaattgatggtttaacccatattaat |
3349738 |
T |
|
| Q |
507 |
attcatgcaccaaatctcaaggattttagtatatgtgatgaatttgagagtatcaactttgaccacacttttcaattagctatggtatctgtttgtttga |
606 |
Q |
| |
|
|| |||||||||| ||||||| |||| || ||||||||||||||||| ||||||||| |||||||||||||||||| ||| |||| | ||| |
|
|
| T |
3349739 |
atccatgcaccaagtctcaagttttttgaaatcgaagatgaatttgagagtattaactttgacaacacttttcaattagctacaatattcgtttatatga |
3349838 |
T |
|
| Q |
607 |
tcactaaaagcaatcaaattagattgcatggatggtctagcaatttgctcaaatttttc |
665 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
3349839 |
aatctaaaagcaatcaaggtagattgcatggattctctagcaatttgctcaaatttttc |
3349897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 7 - 664
Target Start/End: Complemental strand, 9819083 - 9818426
Alignment:
| Q |
7 |
agaaatggtccactctaccagatcttgtgtttgatcgtcgatgtgtatctactgaaacatccaaagacccttcagttattgacagcaagtttttaagaat |
106 |
Q |
| |
|
||||||||||||| | ||||||||||||||||||| |||||||||||||||| | ||| ||| || ||||||| ||| |||| || |||||||| ||||| |
|
|
| T |
9819083 |
agaaatggtccacacaaccagatcttgtgtttgatagtcgatgtgtatctacggcaacctccgaaaacccttcggttgttgagagaaagtttttgagaat |
9818984 |
T |
|
| Q |
107 |
tgttgatcatgtacttttacttcattctgggccaatcaacaagtttgaggtctcagactccaatcaatatttcactattggtgtgaactctatggctgat |
206 |
Q |
| |
|
| ||||||||||||||||||||||||| ||||||||||||||| |||||||||| ||||| ||| | ||| ||||| ||||||| ||||||||||| |
|
|
| T |
9818983 |
tattgatcatgtacttttacttcattccgggccaatcaacaagattgaggtctctaactcctatcgggacatcattattgatgtgaacgctatggctgat |
9818884 |
T |
|
| Q |
207 |
attgattggtggatttttcagaaatccaaaaggtatattaaagagcttgtgctggacagtaggttaaaacaacgctataagataccttggtgcttatact |
306 |
Q |
| |
|
||| || ||||||| |||| | || || ||||||||||||| ||||| |||||| | | || | ||||||||||||||||||| | ||||| || |
|
|
| T |
9818883 |
attaatcagtggattgttcatctaaccggaaagtatattaaagagtttgtgttggacatttgttttgatcaacgctataagataccttcatccttattct |
9818784 |
T |
|
| Q |
307 |
cttgtcaaagtttacatcatttagaactgaattattgttgtcttaaacctccaacaacgtttgaaggcttccggaatttgaaaagtctttatatgtctga |
406 |
Q |
| |
|
| || ||| |||||||||||||||| || ||||||||||| |||||||||||||||| |||||||||||| |||||| ||||||||||||| || | |
|
|
| T |
9818783 |
cctgccaaggtttacatcatttagatcttaattattgttggcttaaacctccaacaatgtttgaaggctttcggaatcagaaaagtctttatttgaatcg |
9818684 |
T |
|
| Q |
407 |
agttacaatgattcaagatgattttgaaaacatgatatctggctgccccctgcttgagaaattgacattgataaaaattgatggtgtaacacagattaat |
506 |
Q |
| |
|
|||||||||| ||||| | ||| | ||||||||| |||| |||||||| || |||||||||||||||| ||||||||||||| |||| || |||||| |
|
|
| T |
9818683 |
ggttacaatgactcaagtagctttcaataacatgatagctggatgccccctactagagaaattgacattgacaaaaattgatggtttaacccatattaat |
9818584 |
T |
|
| Q |
507 |
attcatgcaccaaatctcaaggattttagtatatgtgatgaatttgagagtatcaactttgaccacacttttcaattagctatggtatctgtttgtttga |
606 |
Q |
| |
|
||| ||||||||||||||||| |||| | || |||||||||||||| ||||||||| |||||||||||||| |||| |||| ||| | ||| |
|
|
| T |
9818583 |
attgatgcaccaaatctcaagttttttgaagtcgacgaagaatttgagagtattaactttgacaacacttttcaattatctattgtattattttatatga |
9818484 |
T |
|
| Q |
607 |
tcactaaaagcaatcaaattagattgcatggatggtctagcaatttgctcaaattttt |
664 |
Q |
| |
|
|||||||||||||| ||||||| |||| | || |||||||||| |||| |||| |
|
|
| T |
9818483 |
aatctaaaagcaatcaaggtagattgaatgggttctcaagcaatttgcccaaaatttt |
9818426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 349 - 664
Target Start/End: Original strand, 3341308 - 3341625
Alignment:
| Q |
349 |
ttaaacctccaacaacgt-ttgaaggcttccggaatttgaaaagtctttatatgtctgaagttacaatgattcaag-atgattttgaaaacatgatatct |
446 |
Q |
| |
|
|||||||||||||||| | ||||| |||||||||||||||| | ||||| | |||||| |||| ||||| || | ||| ||||||||||||||||||| |
|
|
| T |
3341308 |
ttaaacctccaacaacatcttgaacgcttccggaatttgaatactctttctttgtctgtcgttagaatgactccatcatgcttttgaaaacatgatatct |
3341407 |
T |
|
| Q |
447 |
ggctgccccctgcttgagaaattgacattgataaaaattgatggtgtaacacagattaatattcatgcaccaaatctcaaggattttagtatatgtgatg |
546 |
Q |
| |
|
|||||||||| ||||| |||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||| | || |
|
|
| T |
3341408 |
agctgccccctacttgaagaattgacattgaaagaaattgatggtttaacacagattaatattcatgcaccaaatctcaagtgtttagatatcttatgtg |
3341507 |
T |
|
| Q |
547 |
aatttgagagtatcaactttgaccacacttttcaattagctatggtatctgtttgtttgatcactaaaagcaatcaaattagattgcatggatggtctag |
646 |
Q |
| |
|
||||||||||||| ||||||||| ||||||| ||||||||| | ||||||||| |||| || |||| |||||||||||| ||||||||||||| ||||| |
|
|
| T |
3341508 |
aatttgagagtattaactttgacgacactttacaattagctctagtatctgttattttgttctctaagagcaatcaaattggattgcatggatgctctag |
3341607 |
T |
|
| Q |
647 |
caatttgctcaaattttt |
664 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
3341608 |
caatttgctcaaattttt |
3341625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 70 - 442
Target Start/End: Original strand, 3361638 - 3362007
Alignment:
| Q |
70 |
aagacccttcagttattgacagcaagtttttaagaattgttgatcatgtacttttacttcattctgggccaatcaacaagtttgaggtctcagactccaa |
169 |
Q |
| |
|
|||||||||| ||||| | | ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| || || |||| | | |
|
|
| T |
3361638 |
aagacccttcggttatcaataacaagtttttgagaattgttgatcatgtacttttacttcattatgggccaatcaacaagttccagatccgcgactacta |
3361737 |
T |
|
| Q |
170 |
tcaatatttcactattggtgtgaactctatggctgatattgattggtggatttttcagaaatccaaaaggtatattaaagagcttgtgctggacagtagg |
269 |
Q |
| |
|
| || ||| || || ||| |||||| | |||||| | |||||||| |||| | || |||| |||||||||| |||||||| ||| | || |
|
|
| T |
3361738 |
ttgtaatctcatta---gtttgagttctatgacagatattcaaaggtggattattcacctaacccgaaggcctattaaagagtttgtgctgcacatttgg |
3361834 |
T |
|
| Q |
270 |
ttaaaacaacgctataagataccttggtgcttatactcttgtcaaagtttacatcatttagaactgaattattgttgtcttaaacctccaacaacgtttg |
369 |
Q |
| |
|
||| | ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| | || | ||||| |||||||||||||||||||||| |
|
|
| T |
3361835 |
ttagacgaacgctataagatcccttggtgcttattctcttgtcaaagtttacatcatttagaattaaaatgctgttggcttaaacctccaacaacgtttg |
3361934 |
T |
|
| Q |
370 |
aaggcttccggaatttgaaaagtctttatatgtctgaagttacaatgattcaagatgattttgaaaacatgat |
442 |
Q |
| |
|
|||||||| ||| |||||||||||| | || | | |||||||||| ||||||| ||||||||||||||| |
|
|
| T |
3361935 |
aaggcttcaagaacttgaaaagtcttgaattgagtcacgttacaatgactcaagattcttttgaaaacatgat |
3362007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 348 - 491
Target Start/End: Original strand, 3340856 - 3340999
Alignment:
| Q |
348 |
cttaaacctccaacaacgtttgaaggcttccggaatttgaaaagtctttatatgtctgaagttacaatgattcaagatgattttgaaaacatgatatctg |
447 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||| |||||| ||||| |||||||| |||||||||||||||||||| |
|
|
| T |
3340856 |
cttaaacctccaacaacatttgaaggcttccggaatttgaaaagtctttctttgtctaaagttagaatgactcaagatgcttttgaaaacatgatatctg |
3340955 |
T |
|
| Q |
448 |
gctgccccctgcttgagaaattgacattgataaaaattgatggt |
491 |
Q |
| |
|
|||||||||||||||| |||||||||| | ||||||||||| |
|
|
| T |
3340956 |
gctgccccctgcttgaagaattgacattaaatgaaattgatggt |
3340999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 348 - 475
Target Start/End: Original strand, 3341156 - 3341283
Alignment:
| Q |
348 |
cttaaacctccaacaacgtttgaaggcttccggaatttgaaaagtctttatatgtctgaagttacaatgattcaagatgattttgaaaacatgatatctg |
447 |
Q |
| |
|
|||||| |||||||||| |||||||| |||||||||||||||||||||| | ||| | |||||| ||||| |||||||| |||||||||||||||||||| |
|
|
| T |
3341156 |
cttaaagctccaacaacatttgaaggtttccggaatttgaaaagtctttctttgtttaaagttagaatgactcaagatgcttttgaaaacatgatatctg |
3341255 |
T |
|
| Q |
448 |
gctgccccctgcttgagaaattgacatt |
475 |
Q |
| |
|
|||||||||||||||| |||||||||| |
|
|
| T |
3341256 |
gctgccccctgcttgaagaattgacatt |
3341283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 317 - 665
Target Start/End: Original strand, 9820163 - 9820510
Alignment:
| Q |
317 |
tttacatcatttagaactgaattattgttgtcttaaac--ctccaacaacgtttgaaggcttccggaatttgaaaagtctttatatgtct-gaagttaca |
413 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||| ||| | |||||||||||| || | | ||| | |
|
|
| T |
9820163 |
tttacatcatttagatctgaattattgttggcttaaacctctccaacaacgtttgaaggcttccgaaatctaaaaagtctttatttgaatcgggtttaga |
9820262 |
T |
|
| Q |
414 |
atgattcaagatgattttgaaaacatgatatctggctgccccctgcttgagaaattgacattgataaaaattgatggtgtaacacagattaatattcatg |
513 |
Q |
| |
|
|||| |||||||| ||| | |||||||||| |||||||||||| || |||||||||||||| | |||||||||||| || | || ||||||| ||| |
|
|
| T |
9820263 |
atgactcaagatgctttcaataacatgatatttggctgcccccttctagagaaattgacatt-aacaaaattgatggtttatccca---taatatttatg |
9820358 |
T |
|
| Q |
514 |
caccaaatctcaaggattttagtatatgtgatgaatttgagagtatcaactttgaccacacttttcaattagctatggtatctgtttgtttgatcactaa |
613 |
Q |
| |
|
|||||||||||| | |||| | ||||||||||||||||| ||||||||| ||| |||||||||||||| |||| ||| | || |||| |
|
|
| T |
9820359 |
caccaaatctcatgttttttgaagtcgacgatgaatttgagagtattaactttgacaacagttttcaattagctactgtattcatttataagaaatctaa |
9820458 |
T |
|
| Q |
614 |
aagcaatcaaattagattgcatggatggtctagcaatttgctcaaatttttc |
665 |
Q |
| |
|
||| |||||| |||||||||||||| |||||||||||| |||||||||| |
|
|
| T |
9820459 |
aagtaatcaaggtagattgcatggattctctagcaatttgtccaaatttttc |
9820510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 349 - 463
Target Start/End: Original strand, 3341007 - 3341121
Alignment:
| Q |
349 |
ttaaacctccaacaacgtttgaaggcttccggaatttgaaaagtctttatatgtctgaagttacaatgattcaagatgattttgaaaacatgatatctgg |
448 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||| | |||||| |||| ||||| |||||||| |||||||||||||||||||| |
|
|
| T |
3341007 |
ttaaacctccaacaacatttgaaggcttccggaatttgaaaagtctttctttgtctgtcgttagaatgactcaagatgcatttgaaaacatgatatctgg |
3341106 |
T |
|
| Q |
449 |
ctgccccctgcttga |
463 |
Q |
| |
|
|||||| |||||||| |
|
|
| T |
3341107 |
ctgccctctgcttga |
3341121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 282 - 585
Target Start/End: Original strand, 2006580 - 2006883
Alignment:
| Q |
282 |
tataagataccttggtgcttatactcttgtcaaagtttacatcatttagaactgaattattgttgtcttaaacctccaacaacgtttgaaggcttccgga |
381 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||| || | | ||||||||| |||||||||||| | ||| |||||||||| || |
|
|
| T |
2006580 |
tataagataccttggtgcttattttcttgtcaaagtttacatcatctaacattatattattgtttgcttaaacctccatcgacgattgaaggcttgaaga |
2006679 |
T |
|
| Q |
382 |
atttgaaaagtctttatatgtctgaagttacaatgattcaagatgattttgaaaacatgatatctggctgccccctgcttgagaaattgacattgataaa |
481 |
Q |
| |
|
| || ||||||||| || || | | |||| ||| ||| ||| |||||| || |||||||| | ||||| |||||||| || |||||||||| | | |
|
|
| T |
2006680 |
acttaaaaagtcttgatttggatcatgttagcatgtctcagtatgcttttgagaatttgatatctagttgccctctgcttgaaaatttgacattgacaga |
2006779 |
T |
|
| Q |
482 |
aattgatggtgtaacacagattaatattcatgcaccaaatctcaaggattttagtatatgtgatgaatttgagagtatcaactttgaccacacttttcaa |
581 |
Q |
| |
|
| |||||||| | || || || || ||||| ||||||||||| |||| ||| ||| |||| | |||||||| ||| | ||||||| ||||||| ||| |
|
|
| T |
2006780 |
acttgatggtttcacccaaataaacattcacgcaccaaatcttaaggttttggatatctgtggtaaatttgaggatattagctttgacaacactttccaa |
2006879 |
T |
|
| Q |
582 |
ttag |
585 |
Q |
| |
|
|||| |
|
|
| T |
2006880 |
ttag |
2006883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 236 - 525
Target Start/End: Original strand, 3372773 - 3373062
Alignment:
| Q |
236 |
aaggtatattaaagagcttgtgctggacagtaggttaaaacaacgctataagataccttggtgcttatactcttgtcaaagtttacatcatttagaactg |
335 |
Q |
| |
|
||||| ||| ||||||||| ||||| || | ||||| | |||| ||||||||||||| | | |||| ||||||||||||||||| ||||||| | || |
|
|
| T |
3372773 |
aaggtctataaaagagcttctgctgcacttttggttagacaaacgttataagatacctttgagtttattctcttgtcaaagtttacgtcattta-agctt |
3372871 |
T |
|
| Q |
336 |
aattattgttgtc---ttaaacctccaacaacgtttgaaggcttccggaatttgaaaagtctttatatgtctgaagttacaatgattcaagatgattttg |
432 |
Q |
| |
|
| | |||||||| |||||| |||||||||||||||||| ||| ||| || || |||| || || || |||||| || |||||||||||||| |
|
|
| T |
3372872 |
a--tcttgttgtcaacttaaacttccaacaacgtttgaaggtttcaagaacctgcaatatcttcatctggaagaggttacactggctcaagatgattttg |
3372969 |
T |
|
| Q |
433 |
aaaacatgatatctggctgccccctgcttgagaaattgacattgataaaaattgatggtgtaacacagattaatattcatgcaccaaatctca |
525 |
Q |
| |
|
|||||||||||||||||||||| || ||||| | ||| |||||| ||||||||||| | |||| |||||| |||| ||||||||||||| |
|
|
| T |
3372970 |
aaaacatgatatctggctgccctctacttgaccatttggtattgatgaaaattgatggcttctcacaaattaatgttcacgcaccaaatctca |
3373062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 28 - 147
Target Start/End: Complemental strand, 4323266 - 4323147
Alignment:
| Q |
28 |
atcttgtgtttgatcgtcgatgtgtatctactgaaacatccaaagacccttcagttattgacagcaagtttttaagaattgttgatcatgtacttttact |
127 |
Q |
| |
|
|||||||| ||||| | | |||||| ||| ||||| | ||| ||||||||| ||||||||| |||||||| | ||| |||||||||||||||||||| |
|
|
| T |
4323266 |
atcttgtgcttgatagacaatgtgtgtctgctgaagcttcccaagaccctttagttattgagcccaagttttcgaaaatggttgatcatgtacttttact |
4323167 |
T |
|
| Q |
128 |
tcattctgggccaatcaaca |
147 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
4323166 |
tcattctgggccaatcaaca |
4323147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 289 - 527
Target Start/End: Complemental strand, 4334898 - 4334660
Alignment:
| Q |
289 |
taccttggtgcttatactcttgtcaaagtttacatcatttagaactgaattattgttgtcttaaacctccaacaacgtttgaaggcttccggaatttgaa |
388 |
Q |
| |
|
|||||||||| |||| ||| ||||||||||||||| |||| || | ||| |||| |||||||||||||| | |||||||||||| | || ||||| |
|
|
| T |
4334898 |
taccttggtgtttattctcatgtcaaagtttacattctttaaaattaaatgggtgtttgcttaaacctccaacgatgtttgaaggctttagaaacttgaa |
4334799 |
T |
|
| Q |
389 |
aagtctttatatgtctgaagttacaatgattcaagatgattttgaaaacatgatatctggctgccccctgcttgagaaattgacattgataaaaattgat |
488 |
Q |
| |
|
||||||| || | | | ||| | || ||||||||| |||||||||| | || ||| | |||||| ||||||| || |||| ||||| | || || || |
|
|
| T |
4334798 |
aagtcttgatctatgtctagtgaatattgttcaagatgcttttgaaaactttatctctaggtgccccttgcttgaaaagttgagattgagagaattttat |
4334699 |
T |
|
| Q |
489 |
ggtgtaacacagattaatattcatgcaccaaatctcaag |
527 |
Q |
| |
|
||| |||| || ||||||||||||||||||||||||||| |
|
|
| T |
4334698 |
ggtttaacgcaaattaatattcatgcaccaaatctcaag |
4334660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #15
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 341 - 523
Target Start/End: Complemental strand, 3218359 - 3218177
Alignment:
| Q |
341 |
ttgttgtcttaaacctccaacaacgtttgaaggcttccggaatttgaaaagtctttatatgtctgaagttacaatgattcaagatgattttgaaaacatg |
440 |
Q |
| |
|
||||||| || ||||||||||||||||| |||||||| ||| |||||||||||| | | | | | ||||||||| |||||||| |||||||||| || |
|
|
| T |
3218359 |
ttgttgtattcaacctccaacaacgtttaaaggcttcaagaacttgaaaagtcttgaactatatcaggttacaatggctcaagatgcttttgaaaacttg |
3218260 |
T |
|
| Q |
441 |
atatctggctgccccctgcttgagaaattgacattgataaaaattgatggtgtaacacagattaatattcatgcaccaaatct |
523 |
Q |
| |
|
||||| ||||||| |||||| || | |||| |||| || | |||| ||| |||| || ||||||| |||||||||||||| |
|
|
| T |
3218259 |
atatccggctgccacctgctagaagatttgaaattgttatatcttgaaggtttaacccaacttaatatccatgcaccaaatct |
3218177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #16
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 282 - 395
Target Start/End: Original strand, 3378863 - 3378976
Alignment:
| Q |
282 |
tataagataccttggtgcttatactcttgtcaaagtttacatcatttagaactga-attattgttgtcttaaacctccaacaacgtttgaaggcttccgg |
380 |
Q |
| |
|
||||||||| | |||||||||| ||||||||||||||||| ||||||| | || | ||| |||| | |||||||||||||||| |||||||||||| | |
|
|
| T |
3378863 |
tataagataacatggtgcttattctcttgtcaaagtttacgtcattta-agcttatattgttgtcgacttaaacctccaacaatatttgaaggcttcaag |
3378961 |
T |
|
| Q |
381 |
aatttgaaaagtctt |
395 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
3378962 |
aatttgaaaagtctt |
3378976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #17
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 66 - 151
Target Start/End: Original strand, 3372606 - 3372691
Alignment:
| Q |
66 |
tccaaagacccttcagttattgacagcaagtttttaagaattgttgatcatgtacttttacttcattctgggccaatcaacaagtt |
151 |
Q |
| |
|
|||||| || |||||||||| | | ||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
3372606 |
tccaaatacacttcagttatcaataacaagtttttgagaattgttgatcatgtacttttacaacattctggtccaatcaacaagtt |
3372691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #18
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 74 - 142
Target Start/End: Original strand, 3378658 - 3378726
Alignment:
| Q |
74 |
cccttcagttattgacagcaagtttttaagaattgttgatcatgtacttttacttcattctgggccaat |
142 |
Q |
| |
|
|||||| ||||| || ||||||||||| |||||| | |||||||||||||||||||||||||||||||| |
|
|
| T |
3378658 |
cccttcggttatcgagagcaagtttttgagaattatcgatcatgtacttttacttcattctgggccaat |
3378726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #19
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 282 - 528
Target Start/End: Original strand, 2019876 - 2020122
Alignment:
| Q |
282 |
tataagataccttggtgcttatactcttgtcaaagtttacatcatttagaactgaattattgttgtcttaaacctccaacaacgtttgaaggcttccgga |
381 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| |||| |||| || | |||||||| |||||||||||| | ||| |||||||||| || |
|
|
| T |
2019876 |
tataagataccttggtgcttattttcttgtcaaagcttacttcatctaagtttatcttattgtttgcttaaacctccatcgacgattgaaggctttaaga |
2019975 |
T |
|
| Q |
382 |
atttgaaaagtctttatatgtctgaagttacaatgattcaagatgattttgaaaacatgatatctggctgccccctgcttgagaaattgacattgataaa |
481 |
Q |
| |
|
| |||||||||||| | || | | |||| ||| ||||||||||||||| | |||||||||| ||||| |||||||| | ||||| |||||| | |
|
|
| T |
2019976 |
acttgaaaagtcttaagttggatcacattactatgtctcaagatgattttgagattttgatatctggttgccctctgcttgaaagattgatattgattga |
2020075 |
T |
|
| Q |
482 |
aattgatggtgtaacacagattaatattcatgcaccaaatctcaagg |
528 |
Q |
| |
|
| |||||||| | ||| | || || ||||| |||||||||||||||| |
|
|
| T |
2020076 |
atttgatggtttcacaaaaataaacattcacgcaccaaatctcaagg |
2020122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #20
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 612 - 665
Target Start/End: Original strand, 3373161 - 3373214
Alignment:
| Q |
612 |
aaaagcaatcaaattagattgcatggatggtctagcaatttgctcaaatttttc |
665 |
Q |
| |
|
||||||||||||| || |||||||||||| |||||||||||||||||||||||| |
|
|
| T |
3373161 |
aaaagcaatcaaagtaaattgcatggatgctctagcaatttgctcaaatttttc |
3373214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #21
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 82 - 147
Target Start/End: Complemental strand, 4335102 - 4335037
Alignment:
| Q |
82 |
ttattgacagcaagtttttaagaattgttgatcatgtacttttacttcattctgggccaatcaaca |
147 |
Q |
| |
|
||||||||| ||||||||| |||||||||||||||||||||| |||||||||| |||||||||| |
|
|
| T |
4335102 |
ttattgacaacaagtttttgcaaattgttgatcatgtacttttagttcattctggaccaatcaaca |
4335037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #22
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 419 - 527
Target Start/End: Complemental strand, 4322878 - 4322770
Alignment:
| Q |
419 |
tcaagatgattttgaaaacatgatatctggctgccccctgcttgagaaattgacattgataaaaattgatggtgtaacacagattaatattcatgcacca |
518 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||| ||||||| || ||| ||||| | || |||||||| |||| || |||||||| ||||||||| |
|
|
| T |
4322878 |
tcaagatgcttttgaaaacatgatatccaaatgccccttgcttgaaaagatgaaattgacagaagttgatggtttaacccaaattaatatccatgcacca |
4322779 |
T |
|
| Q |
519 |
aatctcaag |
527 |
Q |
| |
|
||||||||| |
|
|
| T |
4322778 |
aatctcaag |
4322770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #23
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 102 - 151
Target Start/End: Complemental strand, 3218598 - 3218549
Alignment:
| Q |
102 |
agaattgttgatcatgtacttttacttcattctgggccaatcaacaagtt |
151 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| || ||||||||||| |
|
|
| T |
3218598 |
agaattgttgatcatgtacttctacttcattctggaccgatcaacaagtt |
3218549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #24
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 102 - 151
Target Start/End: Complemental strand, 6601837 - 6601788
Alignment:
| Q |
102 |
agaattgttgatcatgtacttttacttcattctgggccaatcaacaagtt |
151 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
6601837 |
agaattattgatcatgtacttttactccattctgggccaatcaaaaagtt |
6601788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #25
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 104 - 151
Target Start/End: Original strand, 2006414 - 2006461
Alignment:
| Q |
104 |
aattgttgatcatgtacttttacttcattctgggccaatcaacaagtt |
151 |
Q |
| |
|
|||| ||||||| |||||||||||| |||||||||||||||||||||| |
|
|
| T |
2006414 |
aattattgatcaggtacttttactttattctgggccaatcaacaagtt |
2006461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #26
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 104 - 151
Target Start/End: Original strand, 2010503 - 2010550
Alignment:
| Q |
104 |
aattgttgatcatgtacttttacttcattctgggccaatcaacaagtt |
151 |
Q |
| |
|
|||| |||||||||||||||||||| |||| ||||||||||||||||| |
|
|
| T |
2010503 |
aattattgatcatgtacttttactttattccgggccaatcaacaagtt |
2010550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #27
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 104 - 151
Target Start/End: Original strand, 2019716 - 2019763
Alignment:
| Q |
104 |
aattgttgatcatgtacttttacttcattctgggccaatcaacaagtt |
151 |
Q |
| |
|
|||| |||||||||||||||||||| |||| ||||||||||||||||| |
|
|
| T |
2019716 |
aattattgatcatgtacttttactttattccgggccaatcaacaagtt |
2019763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #28
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 60 - 151
Target Start/End: Complemental strand, 6592627 - 6592536
Alignment:
| Q |
60 |
gaaacatccaaagacccttcagttattgacagcaagtttttaagaattgttgatcatgtacttttacttcattctgggccaatcaacaagtt |
151 |
Q |
| |
|
||||| || ||||||| || |||||| | |||||| ||| ||||||| ||||||||||||||||||| | |||||| |||||||| ||||| |
|
|
| T |
6592627 |
gaaacttctaaagaccttttagttatcaagagcaagctttcaagaattattgatcatgtacttttactccgttctggaccaatcaaaaagtt |
6592536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 276 - 332
Target Start/End: Complemental strand, 6601681 - 6601625
Alignment:
| Q |
276 |
caacgctataagataccttggtgcttatactcttgtcaaagtttacatcatttagaa |
332 |
Q |
| |
|
||||||||||| ||||||| ||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
6601681 |
caacgctataaaataccttcatgcttattttcttgtcaaggtttacatcatttagaa |
6601625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #30
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 486 - 594
Target Start/End: Original strand, 9716401 - 9716509
Alignment:
| Q |
486 |
gatggtgtaacacagattaatattcatgcaccaaatctcaaggattttagtatatgtgatgaatttgagagtatcaactttgaccacacttttcaattag |
585 |
Q |
| |
|
|||||| |||| || ||||||||||||||||||||||||||| |||| | | ||||||| ||||||| ||||||| | ||||||||||||||| |
|
|
| T |
9716401 |
gatggtttaacccatattaatattcatgcaccaaatctcaagttttttgaagtcgacggtgaattttagagtattaactttggcaacacttttcaattag |
9716500 |
T |
|
| Q |
586 |
ctatggtat |
594 |
Q |
| |
|
|||| |||| |
|
|
| T |
9716501 |
ctattgtat |
9716509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 613 - 664
Target Start/End: Complemental strand, 4322672 - 4322621
Alignment:
| Q |
613 |
aaagcaatcaaattagattgcatggatggtctagcaatttgctcaaattttt |
664 |
Q |
| |
|
||||||||| || ||||| || |||||| ||||||||||||||||||||||| |
|
|
| T |
4322672 |
aaagcaatccaagtagatcgcctggatgttctagcaatttgctcaaattttt |
4322621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 151
Target Start/End: Original strand, 2011923 - 2011960
Alignment:
| Q |
114 |
catgtacttttacttcattctgggccaatcaacaagtt |
151 |
Q |
| |
|
||||||||||||||| ||| |||||||||||||||||| |
|
|
| T |
2011923 |
catgtacttttactttattatgggccaatcaacaagtt |
2011960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 282 - 323
Target Start/End: Original strand, 2012073 - 2012114
Alignment:
| Q |
282 |
tataagataccttggtgcttatactcttgtcaaagtttacat |
323 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| |||||| |
|
|
| T |
2012073 |
tataagataccttggtgcttattttcttgtcaaagcttacat |
2012114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 433 - 534
Target Start/End: Original strand, 3379021 - 3379122
Alignment:
| Q |
433 |
aaaacatgatatctggctgccccctgcttgagaaattgacattgataaaaattgatggtgtaacacagattaatattcatgcaccaaatctcaaggattt |
532 |
Q |
| |
|
|||||||||||||||||||||| || ||||| | ||| ||||| | || |||||||| | ||||| |||||| ||| ||||||||||| |||| ||| |
|
|
| T |
3379021 |
aaaacatgatatctggctgccctctacttgaagatttggcattgttggaagttgatggtttcacacaaattaatgctcacgcaccaaatctgaaggtttt |
3379120 |
T |
|
| Q |
533 |
ta |
534 |
Q |
| |
|
|| |
|
|
| T |
3379121 |
ta |
3379122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 282 - 326
Target Start/End: Original strand, 2010663 - 2010707
Alignment:
| Q |
282 |
tataagataccttggtgcttatactcttgtcaaagtttacatcat |
326 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| |||| |||| |
|
|
| T |
2010663 |
tataagataccttggtgcttattttcttgtcaaagcttacttcat |
2010707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 617 - 665
Target Start/End: Original strand, 3379217 - 3379265
Alignment:
| Q |
617 |
caatcaaattagattgcatggatggtctagcaatttgctcaaatttttc |
665 |
Q |
| |
|
|||||||| |||||||| ||| | |||||||||||||||||||||||| |
|
|
| T |
3379217 |
caatcaaagaagattgcacggacgctctagcaatttgctcaaatttttc |
3379265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 276 - 332
Target Start/End: Complemental strand, 6592426 - 6592370
Alignment:
| Q |
276 |
caacgctataagataccttggtgcttatactcttgtcaaagtttacatcatttagaa |
332 |
Q |
| |
|
||||||||||| ||||||| || |||| |||||||||||||| |||||||||||| |
|
|
| T |
6592426 |
caacgctataaaataccttcatggttattttcttgtcaaagtttgcatcatttagaa |
6592370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 95; Significance: 4e-46; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 7 - 594
Target Start/End: Original strand, 17969718 - 17970302
Alignment:
| Q |
7 |
agaaatggtccactctaccagatcttgtgtttgatcgtcgatgtgtatctactgaaacatccaaagacccttcagttattgacagcaagtttttaagaat |
106 |
Q |
| |
|
|||||||||| || | ||||||||||||||||||| | | |||||||||||||| | | ||| ||||| ||||||||| || |||||||||| ||||| |
|
|
| T |
17969718 |
agaaatggtctacccaaccagatcttgtgtttgatagacaatgtgtatctactgtagcttccgaagacttttcagttatcgagggcaagtttttgagaat |
17969817 |
T |
|
| Q |
107 |
tgttgatcatgtacttttacttcattctgggccaatcaacaagtttgaggtctcagactccaatcaatat-ttcactattggtgtgaactctatggctga |
205 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||| ||| | ||||| | ||| | || | |||||||||||||||||||||| |
|
|
| T |
17969818 |
cattgatcatgtacttttacttcattcagggccaatcaacaagtttgaagtcactgactc---tgaatgtgatctc-cttggtgtgaactctatggctga |
17969913 |
T |
|
| Q |
206 |
tattgattggtggatttttcagaaatccaaaaggtatattaaagagcttgtgctggacagtaggttaaaacaacgctataagataccttggtgcttatac |
305 |
Q |
| |
|
| ||||| |||||||| |||| | | ||| | | |||||||||||||| |||||| | || | ||| ||||||||||||||||||||||| |
|
|
| T |
17969914 |
tgttgatcggtggattcttcatctaactggaagatctgttaaagagcttgtgttggacatttgggcaggggaactctataagataccttggtgcttattt |
17970013 |
T |
|
| Q |
306 |
tcttgtcaaagtttacatcatttagaactgaattattgttgtcttaaacctccaacaacgtttgaaggcttccggaatttgaaaagtctttatatgtctg |
405 |
Q |
| |
|
|||| ||||||||||||||||||| || | | | |||||| || ||||| ||||| | |||| |||||||| | | ||| |||||||| | | || |
|
|
| T |
17970014 |
tcttatcaaagtttacatcatttaaaattaagtcattgtttgctgaaacccccaacgatgtttaaaggcttcagtagcttggaaagtcttgttctacatg |
17970113 |
T |
|
| Q |
406 |
aagttacaatgattcaagatgattttgaaaacatgatatctggctgccccctgcttgagaaattgacattgataaaaattgatggtgtaacacagattaa |
505 |
Q |
| |
|
| | | ||||| |||||||| ||||||||| ||||||| |||||||| | |||||| ||||| | ||||| | | || | ||| | || ||| |||| |
|
|
| T |
17970114 |
atgctttaatgactcaagatgcctttgaaaacttgatatccggctgccctcagcttgaaaaattaatattgacatcagttaagggtttcactcagtttaa |
17970213 |
T |
|
| Q |
506 |
tattcatgcaccaaatctcaaggattttagtatatgtgatgaatttgagagtatcaactttgaccacacttttcaattagctatggtat |
594 |
Q |
| |
|
|||||| ||||||||||||||| |||| | || || | |||||||| | |||| ||||||| ||||||| ||||||||| |||||| |
|
|
| T |
17970214 |
tattcacgcaccaaatctcaagttttttcgcatcaatggtaaatttgagggcatcagctttgacaacactttgcaattagctgtggtat |
17970302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 91; Significance: 9e-44; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 285 - 527
Target Start/End: Original strand, 20953124 - 20953366
Alignment:
| Q |
285 |
aagataccttggtgcttatactcttgtcaaagtttacatcatttagaactgaattattgttgtcttaaacctccaacaacgtttgaaggcttccggaatt |
384 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||| || | ||| |||||||||||||||||||| |||||||||||||| || | |
|
|
| T |
20953124 |
aagataccttggtgcttattctcttgtcaaagtttacatcatttgaaattacattggtgttgtcttaaacctccaacgacgtttgaaggctttaagaggt |
20953223 |
T |
|
| Q |
385 |
tgaaaagtctttatatgtctgaagttacaatgattcaagatgattttgaaaacatgatatctggctgccccctgcttgagaaattgacattgataaaaat |
484 |
Q |
| |
|
|||| |||||| || || | ||| ||| || |||||||| |||||||||| |||| ||||||||||| |||||||| ||||||| ||||||| || | |
|
|
| T |
20953224 |
tgaagagtcttgatctgaatctagtaacagtggctcaagatgcttttgaaaacttgatctctggctgccctctgcttgaaaaattgaaattgatagaagt |
20953323 |
T |
|
| Q |
485 |
tgatggtgtaacacagattaatattcatgcaccaaatctcaag |
527 |
Q |
| |
|
||||||| | || || |||||||||| |||||||||||||||| |
|
|
| T |
20953324 |
tgatggtttcacccaaattaatattcgtgcaccaaatctcaag |
20953366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 9 - 519
Target Start/End: Original strand, 20923336 - 20923843
Alignment:
| Q |
9 |
aaatggtccactctaccagatcttgtgtttgatcgtcgatgtgtatctactgaaacatccaaagacccttcagttattgacagcaagtttttaagaattg |
108 |
Q |
| |
|
||||||||||| | ||| ||||||||||| ||| | |||||||||| ||| | ||| |||| ||||| ||||| || | ||||||| | || | || |
|
|
| T |
20923336 |
aaatggtccacacaaccggatcttgtgttcgataaacaatgtgtatctgctgcagtttccgaagatccttctgttatcgagaacaagtttgtgaggactg |
20923435 |
T |
|
| Q |
109 |
ttgatcatgtacttttacttcattctgggccaatcaacaagtttgaggtctcagactccaatcaatatttcactattggtgtgaactctatggctgatat |
208 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||| || |||| || | | | |||||| ||||| ||| ||| |||| ||| | |
|
|
| T |
20923436 |
ttgaccatgtacttttacttcattctgggccaatcaacaagttcaagatctctgatttcggttgtgatttca---ttggtatgatatctgtggcagatgt |
20923532 |
T |
|
| Q |
209 |
tgattggtggatttttcagaaatccaaaaggtatattaaagagcttgtgctggacagtaggttaaaacaacgctataagataccttggtgcttatactct |
308 |
Q |
| |
|
|||| |||||||| |||| | | | ||||| ||||||| | |||| |||||||| | |||| | ||||||||||| |||||||||||||||| |||| |
|
|
| T |
20923533 |
tgatcggtggattcttcatctaacaagaaggtctattaaaaatcttgagctggacatttggttcgagcaacgctataacataccttggtgcttattctct |
20923632 |
T |
|
| Q |
309 |
tgtcaaagtttacatcatttagaactgaattattgttgtcttaaacctccaacaacgtttgaaggcttccggaatttgaaaagtctttatatgtctgaag |
408 |
Q |
| |
|
||||||||||||||||||||| | || || || || |||||||||||| | | ||||||||||||| ||| |||||||||||| | || ||| |
|
|
| T |
20923633 |
tgtcaaagtttacatcatttaaatttgttttgttcttcgcttaaacctccagcgatgtttgaaggcttcatgaacttgaaaagtcttcaattggaacaag |
20923732 |
T |
|
| Q |
409 |
ttacaatgattcaagatgattttgaaaacatgatatctggctgccccctgcttgagaaattgacattgataaaaattgatggtgtaacacagattaatat |
508 |
Q |
| |
|
||||| || | |||||| |||||||||| |||||||||||| ||| ||||||| |||||| |||| |||| ||||||| | || || ||||| || |
|
|
| T |
20923733 |
ttacagtggctaaagatgcttttgaaaacttgatatctggctcccctttgcttgaaaaattggttttgaaaaaagttgatggattcactcaaattaacat |
20923832 |
T |
|
| Q |
509 |
tcatgcaccaa |
519 |
Q |
| |
|
|||| |||||| |
|
|
| T |
20923833 |
tcattcaccaa |
20923843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 285 - 527
Target Start/End: Original strand, 20927202 - 20927444
Alignment:
| Q |
285 |
aagataccttggtgcttatactcttgtcaaagtttacatcatttagaactgaattattgttgtcttaaacctccaacaacgtttgaaggcttccggaatt |
384 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||| || | ||| |||||||||||||||||||| ||||||||| |||| || || |
|
|
| T |
20927202 |
aagataccttggtgcttattctcttgtcaaagtttacatcatttaaaattacattggtgttgtcttaaacctccaacgacgtttgaaagctttaagagtt |
20927301 |
T |
|
| Q |
385 |
tgaaaagtctttatatgtctgaagttacaatgattcaagatgattttgaaaacatgatatctggctgccccctgcttgagaaattgacattgataaaaat |
484 |
Q |
| |
|
|||| |||||| || || | ||| ||| || |||| ||||||| ||||| ||||||||||||||||||||||||| ||||| | ||| | | || | |
|
|
| T |
20927302 |
tgaagagtcttgatctgaatctagtaacagtggctcaaaatgatttcgaaaatttgatatctggctgccccctgcttgaaaaatttaaattcacagaagt |
20927401 |
T |
|
| Q |
485 |
tgatggtgtaacacagattaatattcatgcaccaaatctcaag |
527 |
Q |
| |
|
|||||| | || || ||||||| | |||||||||||||||| |
|
|
| T |
20927402 |
tgatggcttcacccaagttaatatccgtgcaccaaatctcaag |
20927444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 285 - 477
Target Start/End: Original strand, 20934586 - 20934778
Alignment:
| Q |
285 |
aagataccttggtgcttatactcttgtcaaagtttacatcatttagaactgaattattgttgtcttaaacctccaacaacgtttgaaggcttccggaatt |
384 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||| || | ||| |||||||||||||||||||| |||| ||||||| ||| | |
|
|
| T |
20934586 |
aagataccttggtgcttattctcttgtcaaagtttacatcatttgaaattacatttctgttgtcttaaacctccaacgttgtttaaaggctttaggagct |
20934685 |
T |
|
| Q |
385 |
tgaaaagtctttatatgtctgaagttacaatgattcaagatgattttgaaaacatgatatctggctgccccctgcttgagaaattgacattga |
477 |
Q |
| |
|
||||||||||| || || | | || || || |||||||| |||||||||| ||||||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
20934686 |
tgaaaagtcttgatctgaatcatgtagcagtggctcaagatgcttttgaaaacttgatatctggctgccccctgcttgaaaaattgaaattga |
20934778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 281 - 523
Target Start/End: Original strand, 39274180 - 39274422
Alignment:
| Q |
281 |
ctataagataccttggtgcttatactcttgtcaaagtttacatcatttagaactgaattattgttgtcttaaacctccaacaacgtttgaaggcttccgg |
380 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||||||||| || | |||| | || || |||||| ||||||||||||||||| |||||||||||| || |
|
|
| T |
39274180 |
ctataagataccttggtgcttattctcctgtcaaagtttgcaacgtttaaagttggcttgttgttggcttaaacctccaacaacatttgaaggcttcagg |
39274279 |
T |
|
| Q |
381 |
aatttgaaaagtctttatatgtctgaagttacaatgattcaagatgattttgaaaacatgatatctggctgccccctgcttgagaaattgacattgataa |
480 |
Q |
| |
|
|| |||||||| ||| | | | | || ||||| | | | || ||||||||| |||||||| |||||||| || ||||| | |||| |||||| |
|
|
| T |
39274280 |
aacttgaaaagacttgaactacataacatttcaatggctgatgctgcttttgaaaaaatgatatccggctgccctctacttgaatatttgagtttgatag |
39274379 |
T |
|
| Q |
481 |
aaattgatggtgtaacacagattaatattcatgcaccaaatct |
523 |
Q |
| |
|
|| ||||||| |||| || |||||||||||||||||||||| |
|
|
| T |
39274380 |
aacctgatggtttaacccaagttaatattcatgcaccaaatct |
39274422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 9 - 166
Target Start/End: Original strand, 39273908 - 39274065
Alignment:
| Q |
9 |
aaatggtccactctaccagatcttgtgtttgatcgtcgatgtgtatctactgaaacatccaaagacccttcagttattgacagcaagtttttaagaattg |
108 |
Q |
| |
|
||||||| ||| |||||| |||||||||||||| | || ||||| ||| || | ||| ||||||||| || |||||| | |||| |||| | ||||| |
|
|
| T |
39273908 |
aaatggtacacactaccaaatcttgtgtttgatagacgttgtgtctctgctagaggttcccaagaccctttagatattgagaacaagcttttgaaaattg |
39274007 |
T |
|
| Q |
109 |
ttgatcatgtacttttacttcattctgggccaatcaacaagtttgaggtctcagactc |
166 |
Q |
| |
|
|||||||||||||||||||||| ||||| || ||||||||||| ||| |||| ||||| |
|
|
| T |
39274008 |
ttgatcatgtacttttacttcactctggacctatcaacaagttcgagttctctgactc |
39274065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 80 - 147
Target Start/End: Original strand, 20952928 - 20952995
Alignment:
| Q |
80 |
agttattgacagcaagtttttaagaattgttgatcatgtacttttacttcattctgggccaatcaaca |
147 |
Q |
| |
|
||||||||| || ||||| || | |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20952928 |
agttattgagaggaagttattgaaaattgttgatcatgtacttttacttcattctgggccaatcaaca |
20952995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 147
Target Start/End: Original strand, 20926947 - 20927073
Alignment:
| Q |
21 |
ctaccagatcttgtgtttgatcgtcgatgtgtatctactgaaacatccaaagacccttcagttattgacagcaagtttttaagaattgttgatcatgtac |
120 |
Q |
| |
|
|||||| ||||||| |||||| ||| |||||| ||| ||| | | |||||||||| | |||||| | || |||||||| | | ||| ||||||||| | |
|
|
| T |
20926947 |
ctaccaaatcttgtctttgatagtcaatgtgtctctgctgcagcttccaaagacctgttagttatcgctaggaagtttttgaaatttgctgatcatgtcc |
20927046 |
T |
|
| Q |
121 |
ttttacttcattctgggccaatcaaca |
147 |
Q |
| |
|
|||||||||||| |||||||||||||| |
|
|
| T |
20927047 |
ttttacttcattatgggccaatcaaca |
20927073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 83; Significance: 6e-39; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 282 - 444
Target Start/End: Original strand, 21237664 - 21237826
Alignment:
| Q |
282 |
tataagataccttggtgcttatactcttgtcaaagtttacatcatttagaactgaattattgttgtcttaaacctccaacaacgtttgaaggcttccgga |
381 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||| | | |||||| |||||||||||||||||||||||||||||| ||| |
|
|
| T |
21237664 |
tataagataccttggtgcttattctcttgtcaaagtttacatcatttagaattaacaagttgttggcttaaacctccaacaacgtttgaaggcttcagga |
21237763 |
T |
|
| Q |
382 |
atttgaaaagtctttatatgtctgaagttacaatgattcaagatgattttgaaaacatgatat |
444 |
Q |
| |
|
| ||| ||||||||| | || ||||||||||||| |||||||| ||| |||||| |||||| |
|
|
| T |
21237764 |
acttggaaagtctttctttgatcgaagttacaatgactcaagatgctttcgaaaacttgatat |
21237826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 92 - 152
Target Start/End: Original strand, 21237477 - 21237537
Alignment:
| Q |
92 |
caagtttttaagaattgttgatcatgtacttttacttcattctgggccaatcaacaagttt |
152 |
Q |
| |
|
||||||||| ||||||||||||||||||||| |||||||||||||| |||| |||||||| |
|
|
| T |
21237477 |
caagtttttgagaattgttgatcatgtacttctacttcattctgggtcaattgacaagttt |
21237537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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