View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0673-Insertion-7 (Length: 442)

Name: NF0673-Insertion-7
Description: NF0673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0673-Insertion-7
NF0673-Insertion-7
[»] chr4 (11 HSPs)
chr4 (7-258)||(43487238-43487489)
chr4 (12-239)||(43465483-43465710)
chr4 (7-227)||(43459780-43460000)
chr4 (302-442)||(43487489-43487629)
chr4 (7-241)||(43478912-43479146)
chr4 (25-221)||(43494244-43494437)
chr4 (25-242)||(43467867-43468084)
chr4 (7-195)||(43452618-43452806)
chr4 (25-140)||(43475419-43475534)
chr4 (67-242)||(43482674-43482849)
chr4 (336-400)||(44796971-44797035)
[»] chr7 (1 HSPs)
chr7 (314-374)||(21139028-21139089)
[»] chr2 (1 HSPs)
chr2 (343-399)||(36281678-36281734)
[»] chr5 (1 HSPs)
chr5 (334-401)||(12264837-12264904)
[»] chr3 (2 HSPs)
chr3 (342-401)||(32804548-32804607)
chr3 (348-392)||(4201394-4201438)
[»] scaffold0018 (1 HSPs)
scaffold0018 (336-401)||(192257-192322)
[»] scaffold0004 (1 HSPs)
scaffold0004 (336-401)||(92793-92858)
[»] chr6 (3 HSPs)
chr6 (351-392)||(25038088-25038129)
chr6 (348-392)||(31579242-31579286)
chr6 (336-392)||(34073364-34073420)
[»] chr1 (1 HSPs)
chr1 (336-392)||(25452165-25452221)


Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-137; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 7 - 258
Target Start/End: Original strand, 43487238 - 43487489
Alignment:
Q  7 aatttctgcctcaccacatcatgcaaatcatcatcatccacaagatacaccgtgtcgtcctcttcatcaacatatttcagactgaaatttgtatcagcgg 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43487238 aatttctgcctcaccacatcatgcaaatcatcatcatccacaagatacaccgtgtcgtcctcttcatcaacatatttcagactgaaatttgtatcagcgg 43487337  T
Q  107 taaaattgaaaacagaccgtatcttagccctcaacacaaccatgctaagatccatttgattattctcatctacacgaaaattgaagcgcttgaagttact 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  43487338 taaaattgaaaacagaccgtatcttagccctcaacacaaccatgctaagatccatttgattattctcatccacacgaaaattgaagcgcttgaagttact 43487437  T
Q  207 tccacatttcacctgtacagatataacaagtgacatatgatatttttgtttt 258  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43487438 tccacatttcacctgtacagatataacaagtgacatatgatatttttgtttt 43487489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 12 - 239
Target Start/End: Original strand, 43465483 - 43465710
Alignment:
Q  12 ctgcctcaccacatcatgcaaatcatcatcatccacaagatacaccgtgtcgtcctcttcatcaacatatttcagactgaaatttgtatcagcggtaaaa 111  Q
    |||||||| ||| ||||||||||||| |||||||||||||| ||||  |||| | ||||||||||||||||||||||||||||||| ||| ||  |||||    
T  43465483 ctgcctcatcacgtcatgcaaatcattatcatccacaagattcaccaagtcgccatcttcatcaacatatttcagactgaaatttgcatccgcattaaaa 43465582  T
Q  112 ttgaaaacagaccgtatcttagccctcaacacaaccatgctaagatccatttgattattctcatctacacgaaaattgaagcgcttgaagttacttccac 211  Q
    ||||||  |||||||||||||||||||||| ||||||||  ||||| ||||  |||||||||||| ||||||| ||| |||||||||||| || |||||     
T  43465583 ttgaaattagaccgtatcttagccctcaactcaaccatgtcaagattcattacattattctcatccacacgaacattaaagcgcttgaaggtatttccaa 43465682  T
Q  212 atttcacctgtacagatataacaagtga 239  Q
    ||||||||| || |||||||||||||||    
T  43465683 atttcacctatatagatataacaagtga 43465710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 7 - 227
Target Start/End: Original strand, 43459780 - 43460000
Alignment:
Q  7 aatttctgcctcaccacatcatgcaaatcatcatcatccacaagatacaccgtgtcgtcctcttcatcaacatatttcagactgaaatttgtatcagcgg 106  Q
    |||| |||||||| ||  |||||||||||||||||||| ||||||| ||||  |||| ||||||||||||||||| ||| ||||||||||| || | | |    
T  43459780 aattgctgcctcatcatgtcatgcaaatcatcatcatctacaagattcaccaagtcgccctcttcatcaacatatctcaaactgaaatttgcattatcag 43459879  T
Q  107 taaaattgaaaacagaccgtatcttagccctcaacacaaccatgctaagatccatttgattattctcatctacacgaaaattgaagcgcttgaagttact 206  Q
    ||||||| ||| ||||||||||||||||||||| | |||||||  ||||||||||| ||||||||||||| |||| || |||||||||||||||| || |    
T  43459880 taaaattaaaatcagaccgtatcttagccctcagctcaaccatcttaagatccattcgattattctcatccacactaacattgaagcgcttgaaggtatt 43459979  T
Q  207 tccacatttcacctgtacaga 227  Q
    | || ||||||||||||||||    
T  43459980 ttcaaatttcacctgtacaga 43460000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 302 - 442
Target Start/End: Original strand, 43487489 - 43487629
Alignment:
Q  302 tgcactcttatatatgacgcacggatacagaaacgacacagacatgccaacaccgttaataaattgagaaaattgcataattaagtgtaatcacatgtgt 401  Q
    ||||||||||| ||||||| ||||||||||||||||||||| ||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||    
T  43487489 tgcactcttatctatgacgtacggatacagaaacgacacaggcatgccaacaccgctaataaattgtgaaaatttcataattaagtgtaatcacatgtgt 43487588  T
Q  402 gagtgatttcaagacacacctaatttaaggaatgttcgtgc 442  Q
    ||||||||||| |||||||||  ||||||||||||||||||    
T  43487589 gagtgatttcaggacacaccttttttaaggaatgttcgtgc 43487629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 7 - 241
Target Start/End: Original strand, 43478912 - 43479146
Alignment:
Q  7 aatttctgcctcaccacatcatgcaaatcatcatcatccacaagatacaccgtgtcgtcctcttcatcaacatatttcagactgaaatttgtatcagcgg 106  Q
    ||||||||||||| ||  |||| ||||||||||||||||||||||| ||||  |||  ||||||||||||||||| ||||||||||||||  ||| ||      
T  43478912 aatttctgcctcatcatgtcatccaaatcatcatcatccacaagattcaccaagtcaccctcttcatcaacatatctcagactgaaatttacatctgcat 43479011  T
Q  107 taaaattgaaaacagaccgtatcttagccctcaacacaaccatgctaagatccatttgattattctcatctacacgaaaattgaagcgcttgaagttact 206  Q
    ||||| |||||   ||||||||||||||||||||| |||||||| ||| || | |||||||||||||||| ||||||| ||  ||| || ||| | || |    
T  43479012 taaaaatgaaatatgaccgtatcttagccctcaactcaaccatgttaatattcctttgattattctcatccacacgaacatgaaagtgcatgacggtatt 43479111  T
Q  207 tccacatttcacctgtacagatataacaagtgaca 241  Q
    | || |||||||||| ||| |||||| ||| ||||    
T  43479112 ttcaaatttcacctgcacaaatataataagcgaca 43479146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 25 - 221
Target Start/End: Original strand, 43494244 - 43494437
Alignment:
Q  25 tcatgcaaatcatcatcatccacaagatacaccgtgtcgtcctcttcatcaacatatttcagactgaaatttgtatcagcggtaaaattgaaaacagacc 124  Q
    |||||||||||||||||||||||||||| ||||  |||  ||||||||||||||||| ||||| ||||||||| || |    |||||||||||| |||||    
T  43494244 tcatgcaaatcatcatcatccacaagattcaccaagtcaccctcttcatcaacatatctcagaatgaaatttgcatga---ctaaaattgaaaatagacc 43494340  T
Q  125 gtatcttagccctcaacacaaccatgctaagatccatttgattattctcatctacacgaaaattgaagcgcttgaagttacttccacatttcacctg 221  Q
    ||||||||||| ||||   ||||||| ||||||||| || |||||||||||| ||| ||| | |||| ||  ||||| || ||||| ||||||||||    
T  43494341 gtatcttagccttcaaactaaccatgttaagatccacttcattattctcatcaacatgaacactgaaacgtctgaaggtatttccatatttcacctg 43494437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 25 - 242
Target Start/End: Original strand, 43467867 - 43468084
Alignment:
Q  25 tcatgcaaatcatcatcatccacaagatacaccgtgtcgtcctcttcatcaacatatttcagactgaaatttgtatcagcggtaaaattgaaaacagacc 124  Q
    |||| |||||||| |||||||||||||| ||||   ||| | ||||||||||||||  ||||| |||| |||| || ||| ||||||||||||||||| |    
T  43467867 tcattcaaatcattatcatccacaagattcacctgctcgccatcttcatcaacatagctcagaatgaagtttgcattagcagtaaaattgaaaacagaac 43467966  T
Q  125 gtatcttagccctcaacacaaccatgctaagatccatttgattattctcatctacacgaaaattgaagcgcttgaagttacttccacatttcacctgtac 224  Q
     ||||||| |||||||| |||||||| |||| ||||| |||||||| ||||| | || || |  ||  ||  ||||| || ||||| |||||||||| ||    
T  43467967 atatcttatccctcaacccaaccatgttaaggtccatgtgattattgtcatccatacaaacaccgatccgtctgaaggtatttccatatttcacctgaac 43468066  T
Q  225 agatataacaagtgacat 242  Q
    ||| ||||||||| ||||    
T  43468067 agaaataacaagtaacat 43468084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 7 - 195
Target Start/End: Original strand, 43452618 - 43452806
Alignment:
Q  7 aatttctgcctcaccacatcatgcaaatcatcatcatccacaagatacaccgtgtcgtcctcttcatcaacatatttcagactgaaatttgtatcagcgg 106  Q
    |||| ||| |||| |||||||||||||||||||||||||||||||| ||||  |||| | || |||||||||||| ||||| | | |||   |||||| |    
T  43452618 aattgctgtctcatcacatcatgcaaatcatcatcatccacaagattcaccaagtcgccatcctcatcaacatatctcagagttagattcacatcagcag 43452717  T
Q  107 taaaattgaaaacagaccgtatcttagccctcaacacaaccatgctaagatccatttgattattctcatctacacgaaaattgaagcgc 195  Q
      |||||| ||| ||| | |||||||| ||||||| |||||||| |||||||||   |||| |||||||| ||||||| ||||||||||    
T  43452718 ggaaattgtaaatagaacatatcttagacctcaacccaaccatgttaagatccaaccgattgttctcatccacacgaacattgaagcgc 43452806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 25 - 140
Target Start/End: Original strand, 43475419 - 43475534
Alignment:
Q  25 tcatgcaaatcatcatcatccacaagatacaccgtgtcgtcctcttcatcaacatatttcagactgaaatttgtatcagcggtaaaattgaaaacagacc 124  Q
    |||| |||||||| |||||||||||||| |||| | ||| | ||||||||||||||  ||||| |||| |||| |||| | |||||||  |||| |||||    
T  43475419 tcattcaaatcattatcatccacaagattcaccatctcggcatcttcatcaacatagctcagagtgaattttgcatcatcagtaaaataaaaaatagacc 43475518  T
Q  125 gtatcttagccctcaa 140  Q
     |||||||||||||||    
T  43475519 ttatcttagccctcaa 43475534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 67 - 242
Target Start/End: Original strand, 43482674 - 43482849
Alignment:
Q  67 tcttcatcaacatatttcagactgaaatttgtatcagcggtaaaattgaaaacagaccgtatcttagccctcaacacaaccatgctaagatccatttgat 166  Q
    ||||||||||||||  ||||| |||| |||  |||| | |||||||  |||| ||||| ||||||||||||||||  |||||||  || ||| |||||||    
T  43482674 tcttcatcaacatagctcagagtgaattttacatcatcagtaaaatcaaaaatagaccttatcttagccctcaacctaaccatgtcaatatcaatttgat 43482773  T
Q  167 tattctcatctacacgaaaattgaagcgcttgaagttacttccacatttcacctgtacagatataacaagtgacat 242  Q
    |||| ||||| |||  || |||||||||| || ||  |  |||| |  ||||||| ||||| ||||||||||||||    
T  43482774 tattgtcatccacagaaacattgaagcgcctgtaggcatctccaaacctcacctgaacagaaataacaagtgacat 43482849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 336 - 400
Target Start/End: Complemental strand, 44797035 - 44796971
Alignment:
Q  336 gacacagacatgccaacaccgttaataaattgagaaaattgcataattaagtgtaatcacatgtg 400  Q
    |||||||||||| ||||||||  ||||| ||||||||||  ||||||| | |||||| |||||||    
T  44797035 gacacagacatgtcaacaccgacaataatttgagaaaataacataattcaatgtaattacatgtg 44796971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 314 - 374
Target Start/End: Complemental strand, 21139089 - 21139028
Alignment:
Q  314 tatgacgcacggatacagaaac-gacacagacatgccaacaccgttaataaattgagaaaat 374  Q
    ||||| ||||||||||||| || ||||| |||||| ||||||||||||||| ||||||||||    
T  21139089 tatgaagcacggatacagacacagacactgacatgtcaacaccgttaataatttgagaaaat 21139028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 343 - 399
Target Start/End: Original strand, 36281678 - 36281734
Alignment:
Q  343 acatgccaacaccgttaataaattgagaaaattgcataattaagtgtaatcacatgt 399  Q
    ||||||||| ||||||||||| ||||||||||  ||||||| |||||||||| ||||    
T  36281678 acatgccaataccgttaataatttgagaaaatcacataatttagtgtaatcatatgt 36281734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 334 - 401
Target Start/End: Complemental strand, 12264904 - 12264837
Alignment:
Q  334 acgacacagacatgccaacaccgttaataaattgagaaaattgcataattaagtgtaatcacatgtgt 401  Q
    ||||||| ||||||||||||||| |||| | ||||||||||| ||| ||| |||||||| | ||||||    
T  12264904 acgacactgacatgccaacaccgctaattatttgagaaaattacatgattcagtgtaattatatgtgt 12264837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 342 - 401
Target Start/End: Complemental strand, 32804607 - 32804548
Alignment:
Q  342 gacatgccaacaccgttaataaattgagaaaattgcataattaagtgtaatcacatgtgt 401  Q
    |||||||| ||||||||||||| ||||||||||  ||||||| |||||||| | ||||||    
T  32804607 gacatgccgacaccgttaataatttgagaaaatcacataatttagtgtaattatatgtgt 32804548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 348 - 392
Target Start/End: Original strand, 4201394 - 4201438
Alignment:
Q  348 ccaacaccgttaataaattgagaaaattgcataattaagtgtaat 392  Q
    |||||||||||||||| |||| |||||  ||||||||||||||||    
T  4201394 ccaacaccgttaataatttgaaaaaatcacataattaagtgtaat 4201438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 401
Target Start/End: Complemental strand, 192322 - 192257
Alignment:
Q  336 gacacagacatgccaacaccgttaataaattgagaaaattgcataattaagtgtaatcacatgtgt 401  Q
    ||||| |||| ||| ||||||||||||| ||||||||||| |||||||  ||||||| ||| ||||    
T  192322 gacactgacacgccgacaccgttaataatttgagaaaattacataattcggtgtaattacaagtgt 192257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 401
Target Start/End: Original strand, 92793 - 92858
Alignment:
Q  336 gacacagacatgccaacaccgttaataaattgagaaaattgcataattaagtgtaatcacatgtgt 401  Q
    ||||| |||| ||| |||||| |||||| ||||||||||| ||||||| |||||||| ||| ||||    
T  92793 gacactgacacgccgacaccgctaataatttgagaaaattacataattcagtgtaattacaagtgt 92858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 392
Target Start/End: Complemental strand, 25038129 - 25038088
Alignment:
Q  351 acaccgttaataaattgagaaaattgcataattaagtgtaat 392  Q
    ||||||||||||| ||||||||||| ||||||| ||||||||    
T  25038129 acaccgttaataatttgagaaaattacataatttagtgtaat 25038088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 348 - 392
Target Start/End: Complemental strand, 31579286 - 31579242
Alignment:
Q  348 ccaacaccgttaataaattgagaaaattgcataattaagtgtaat 392  Q
    |||||||||||||||| ||||||||||  ||||||| ||||||||    
T  31579286 ccaacaccgttaataatttgagaaaatcacataattcagtgtaat 31579242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 336 - 392
Target Start/End: Complemental strand, 34073420 - 34073364
Alignment:
Q  336 gacacagacatgccaacaccgttaataaattgagaaaattgcataattaagtgtaat 392  Q
    ||||| |||||||||||| || |||||| ||||||||||  ||||||| ||||||||    
T  34073420 gacactgacatgccaacatcgctaataatttgagaaaatctcataattcagtgtaat 34073364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 336 - 392
Target Start/End: Complemental strand, 25452221 - 25452165
Alignment:
Q  336 gacacagacatgccaacaccgttaataaattgagaaaattgcataattaagtgtaat 392  Q
    ||||| ||||||||||||| | |||||| ||||||||||  ||||||| ||||||||    
T  25452221 gacaccgacatgccaacactgctaataatttgagaaaatctcataattcagtgtaat 25452165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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