View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0673-Insertion-8 (Length: 420)
Name: NF0673-Insertion-8
Description: NF0673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0673-Insertion-8 |
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Alignment Details
Target: chr6 (Bit Score: 349; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 7 - 408
Target Start/End: Complemental strand, 35047077 - 35046676
Alignment:
| Q |
7 |
agttttgtgttatcttactgtggttcannnnnnnggttttagtttggtcactttgtacataacctatataccaagtgctaagaatattctccaaaataaa |
106 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
35047077 |
agttttgtgttatcttactgtggttcatttttttggttttagtttggtcactttgtacataacctatataccaagtgctaaaaatattctccaaaataaa |
35046978 |
T |
|
| Q |
107 |
ggcatcaatattgaaacattttctttatttaccatagtttcaacatttgcaagttgtggctatatacctaccaatgagaacatgatagttttcaagaaga |
206 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||| |
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| T |
35046977 |
ggcatcaatattgaaacattttctttatttacaatagtttcaacatttgcaagttgtggttatatccctaccaatgagaacatgatggttttcaagaaga |
35046878 |
T |
|
| Q |
207 |
attcaggacttcttcttcttgttcttccacatgtacttttaggtaatgccctatatgcaccatgtttgaggctaataataacttttttgaaaagtattac |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35046877 |
attcaggacttcttcttcttgttcttccacatgtacttttaggtaatgctctatatgcaccatgtttgaggctaataataacttttttgaaaagtattac |
35046778 |
T |
|
| Q |
307 |
taaaagagaagaattctcttacttgctgaataattcaaaggaaatgggttatgatcatttgctctctactcttcattgttggcaccttggtagcactgtc |
406 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
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|
| T |
35046777 |
taaaagagaagaattctcttacttgctgaataattcaaaggaaatgggttatgatcatttgctctctactcttcattgttggcaccttgttggcactgtc |
35046678 |
T |
|
| Q |
407 |
tt |
408 |
Q |
| |
|
|| |
|
|
| T |
35046677 |
tt |
35046676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 41 - 394
Target Start/End: Complemental strand, 35000688 - 35000329
Alignment:
| Q |
41 |
ggttttagtttggtcactttgtacataacctatatacca------agtgctaagaatattctccaaaataaaggcatcaatattgaaacattttctttat |
134 |
Q |
| |
|
|||||||||||||| ||||||||||||||| || ||||| |||||||| ||| | || |||| ||||||||||| || |||||||||||||||| |
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| T |
35000688 |
ggttttagtttggtgactttgtacataaccaatgtaccatggccaagtgctaaaaatgtacttaaaaacaaaggcatcaagatagaaacattttctttat |
35000589 |
T |
|
| Q |
135 |
ttaccatagtttcaacatttgcaagttgtggctatatacctaccaatgagaacatgatagttttcaagaagaattcaggacttcttcttcttgttcttcc |
234 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
35000588 |
ttaccatagtttcaacatttgcaacatgtggttatgtaccaaccaatgagaacatgatagttttcaagaagaattcaggacttcttcttcttattcttcc |
35000489 |
T |
|
| Q |
235 |
acatgtacttttaggtaatgccctatatgcaccatgtttgaggctaataataacttttttgaaaagtattactaaaagagaagaattctcttacttgctg |
334 |
Q |
| |
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||||||||||||||||||| |||| || | |||||||||||||| | |||| || |||||||| ||| ||||||||| ||||||||||||||| || |
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|
| T |
35000488 |
acatgtacttttaggtaataccctttaccctccatgtttgaggcttttcataaaggttctgaaaagtgttaataaaagagaggaattctcttacttgttg |
35000389 |
T |
|
| Q |
335 |
aataattcaaaggaaatgggttatgatcatttgctctctactcttcattgttggcacctt |
394 |
Q |
| |
|
|| ||||||||||||||||||||||| |||||||||||| ||||||||||||||| |||| |
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|
| T |
35000388 |
aagaattcaaaggaaatgggttatgaccatttgctctcttctcttcattgttggctcctt |
35000329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 122 - 244
Target Start/End: Complemental strand, 34973935 - 34973813
Alignment:
| Q |
122 |
acattttctttatttaccatagtttcaacatttgcaagttgtggctatatacctaccaatgagaacatgatagttttcaagaagaattcaggacttcttc |
221 |
Q |
| |
|
||||||||| | ||||| |||||||||||||||||||||||||| | | | || || ||||| |||||| | ||||| | ||||||||||| ||||||| |
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|
| T |
34973935 |
acattttctgtttttactatagtttcaacatttgcaagttgtggatttgttccaacaaatgaaaacatggttgtttttagaaagaattcaggtcttcttc |
34973836 |
T |
|
| Q |
222 |
ttcttgttcttccacatgtactt |
244 |
Q |
| |
|
|| | || ||||||| |||||| |
|
|
| T |
34973835 |
ttatgcttattccacaagtactt |
34973813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 122 - 223
Target Start/End: Complemental strand, 35034680 - 35034579
Alignment:
| Q |
122 |
acattttctttatttaccatagtttcaacatttgcaagttgtggctatatacctaccaatgagaacatgatagttttcaagaagaattcaggacttcttc |
221 |
Q |
| |
|
||||||||| | ||||| ||||||||||||||| |||||||||| | ||| || || ||||| |||||| | ||||| | ||||||||||| ||||||| |
|
|
| T |
35034680 |
acattttctctttttactatagtttcaacattttcaagttgtggatttattccaacaaatgaaaacatggttgtttttagaaagaattcaggtcttcttc |
35034581 |
T |
|
| Q |
222 |
tt |
223 |
Q |
| |
|
|| |
|
|
| T |
35034580 |
tt |
35034579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 223
Target Start/End: Complemental strand, 34955524 - 34955423
Alignment:
| Q |
122 |
acattttctttatttaccatagtttcaacatttgcaagttgtggctatatacctaccaatgagaacatgatagttttcaagaagaattcaggacttcttc |
221 |
Q |
| |
|
||||||||| | ||||| ||||||||| ||||| |||||||||| | | | || || ||||| |||||||| | ||| | ||||||||||| ||||||| |
|
|
| T |
34955524 |
acattttctgtttttactatagtttcatcattttcaagttgtggttttgttccaacaaatgaaaacatgattgattttagaaagaattcaggtcttcttc |
34955425 |
T |
|
| Q |
222 |
tt |
223 |
Q |
| |
|
|| |
|
|
| T |
34955424 |
tt |
34955423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 307 - 354
Target Start/End: Complemental strand, 15559966 - 15559919
Alignment:
| Q |
307 |
taaaagagaagaattctcttacttgctgaataattcaaaggaaatggg |
354 |
Q |
| |
|
||||||||| |||||||||||| | ||||| ||||||||||||||||| |
|
|
| T |
15559966 |
taaaagagaggaattctcttacctactgaagaattcaaaggaaatggg |
15559919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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